Wall clock time and date at job start Mon Mar 30 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35672 * 116.99977 * 2 1 4 4 C 1.38609 * 120.14420 * 0.02562 * 3 2 1 5 5 C 1.37458 * 120.64594 * 180.02562 * 4 3 2 6 6 C 1.41624 * 121.02730 * 359.97438 * 5 4 3 7 7 C 1.45457 * 128.93958 * 180.27250 * 6 5 4 8 8 C 1.32799 * 114.70155 * 180.17537 * 7 6 5 9 9 N 1.39219 * 124.39886 * 179.84360 * 8 7 6 10 10 S 1.75293 * 111.20229 * 359.58443 * 8 7 6 11 11 C 1.39230 * 119.12092 * 0.02562 * 6 5 4 12 12 C 1.41047 * 120.14058 * 180.02562 * 3 2 1 13 13 C 1.40797 * 120.12468 * 359.97438 * 12 3 2 14 14 H 1.08001 * 119.99927 * 38.85321 * 13 12 3 15 15 C 1.39817 * 119.99851 * 218.85752 * 13 12 3 16 16 N 1.30975 * 120.00092 * 21.09480 * 15 13 12 17 17 Si 1.86798 * 119.99904 * 201.10067 * 15 13 12 18 18 H 1.48497 * 109.47279 * 89.99831 * 17 15 13 19 19 H 1.48508 * 109.46993 * 209.99779 * 17 15 13 20 20 H 1.48501 * 109.47207 * 329.99680 * 17 15 13 21 21 H 1.08997 * 109.46992 * 299.99722 * 1 2 3 22 22 H 1.09001 * 109.46776 * 59.99909 * 1 2 3 23 23 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 24 24 H 1.07995 * 119.67700 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.48428 * 180.02562 * 5 4 3 26 26 H 1.07995 * 122.65224 * 0.02562 * 7 6 5 27 27 H 0.96994 * 120.00015 * 179.73162 * 9 8 7 28 28 H 0.96997 * 119.99251 * 359.45146 * 9 8 7 29 29 H 0.96995 * 119.99877 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2930 2.3732 0.0005 5 6 1.9063 3.6034 0.0000 6 6 3.3181 3.7152 -0.0005 7 6 4.1401 4.9152 0.0042 8 6 5.4491 4.6913 -0.0014 9 7 6.4180 5.6910 -0.0015 10 16 5.7984 2.9735 -0.0014 11 6 4.0896 2.5562 -0.0011 12 6 3.4533 1.2861 -0.0005 13 6 4.2256 0.1089 -0.0005 14 1 3.9126 -0.7423 -0.5870 15 6 5.3978 0.0418 0.7587 16 7 5.5747 0.8623 1.7641 17 14 6.7115 -1.2181 0.3390 18 1 7.6692 -0.6301 -0.6317 19 1 7.4363 -1.6080 1.5752 20 1 6.0735 -2.4179 -0.2599 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2147 2.3133 0.0005 25 1 1.3021 4.4986 0.0009 26 1 3.7192 5.9098 0.0094 27 1 7.3587 5.4546 -0.0019 28 1 6.1523 6.6238 -0.0053 29 1 6.3876 0.8155 2.2910 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396247607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:49:49 Heat of formation + Delta-G solvation = -20.615442 kcal Electronic energy + Delta-G solvation = -15734.786905 eV Core-core repulsion = 13134.269625 eV Total energy + Delta-G solvation = -2600.517280 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40481 -38.54331 -36.79336 -35.35511 -32.85405 -31.78789 -28.45378 -27.56646 -26.92553 -23.60956 -22.64779 -21.18124 -19.65742 -18.41096 -17.91445 -17.39084 -16.69444 -16.39392 -16.17324 -15.53863 -15.29252 -14.48296 -14.29580 -14.27963 -13.84002 -13.41819 -13.11837 -12.83730 -12.65944 -12.50638 -12.15525 -12.05949 -11.65340 -11.53049 -11.16791 -10.74511 -10.26335 -9.46505 -8.72424 -8.16319 -7.79709 -6.24465 0.50125 0.88398 0.90443 1.37949 1.42722 1.49561 1.70463 1.92041 2.25400 2.77775 2.98393 3.17598 3.52784 4.30874 4.47740 4.53888 4.62481 4.72904 4.78517 4.95362 5.06061 5.16417 5.26914 5.52828 5.72528 5.81571 6.02794 6.25916 6.36724 6.46510 6.68722 6.89698 6.99995 7.24928 8.37588 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.013801 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.602288 B = 2028.320412 C = 3690.525213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.337 6.337 3 C -0.001 4.001 4 C -0.163 4.163 5 C -0.181 4.181 6 C -0.058 4.058 7 C -0.266 4.266 8 C 0.103 3.897 9 N -0.839 5.839 10 S 0.103 5.897 11 C -0.192 4.192 12 C 0.100 3.900 13 C -0.491 4.491 14 H 0.069 0.931 15 C 0.037 3.963 16 N -0.802 5.802 17 Si 0.956 3.044 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.263 1.263 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.110 0.890 24 H 0.135 0.865 25 H 0.125 0.875 26 H 0.141 0.859 27 H 0.406 0.594 28 H 0.410 0.590 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 5.021 -2.147 5.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.252 6.252 3 C -0.048 4.048 4 C -0.184 4.184 5 C -0.202 4.202 6 C -0.066 4.066 7 C -0.302 4.302 8 C -0.117 4.117 9 N -0.385 5.385 10 S 0.360 5.640 11 C -0.309 4.309 12 C 0.093 3.907 13 C -0.521 4.521 14 H 0.087 0.913 15 C -0.178 4.178 16 N -0.429 5.429 17 Si 0.777 3.223 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.187 1.187 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.129 0.871 24 H 0.153 0.847 25 H 0.143 0.857 26 H 0.158 0.842 27 H 0.236 0.764 28 H 0.242 0.758 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.395 4.122 -1.946 4.767 hybrid contribution -0.915 0.563 0.094 1.079 sum 0.480 4.686 -1.852 5.061 Atomic orbital electron populations 1.23096 0.78579 1.04184 1.01033 1.85916 1.21451 1.27525 1.90338 1.19101 0.91714 0.84098 1.09892 1.20797 0.99245 0.91795 1.06519 1.20359 0.91592 0.96718 1.11580 1.19060 0.94300 0.91236 1.02027 1.20269 0.91119 0.97934 1.20852 1.21942 0.92925 0.95707 1.01092 1.41405 1.05775 1.05440 1.85830 1.83600 1.06398 0.93382 1.80652 1.22140 0.94989 0.95973 1.17757 1.16506 0.89061 0.91816 0.93285 1.19236 1.06768 0.99711 1.26396 0.91299 1.26404 0.99756 0.98535 0.93114 1.69908 1.26592 1.34335 1.12022 0.85559 0.78325 0.79153 0.79270 1.18233 1.18919 1.18692 0.93149 0.92682 0.87142 0.84731 0.85668 0.84181 0.76434 0.75799 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.81 113.37 1.11 1.97 15 2 O -0.34 -16.06 9.92 -89.89 -0.89 -16.95 15 3 C 0.00 -0.03 6.71 23.05 0.15 0.13 15 4 C -0.16 -7.31 8.98 22.17 0.20 -7.11 15 5 C -0.18 -8.10 10.08 22.92 0.23 -7.87 15 6 C -0.06 -2.84 6.03 -20.35 -0.12 -2.96 15 7 C -0.27 -11.06 10.39 22.95 0.24 -10.82 15 8 C 0.10 4.02 7.46 82.34 0.61 4.64 15 9 N -0.84 -23.11 9.11 -54.97 -0.50 -23.61 15 10 S 0.10 4.76 19.83 -56.49 -1.12 3.64 15 11 C -0.19 -10.21 5.73 23.46 0.13 -10.08 15 12 C 0.10 5.63 5.38 -21.02 -0.11 5.52 15 13 C -0.49 -27.86 8.43 23.28 0.20 -27.67 15 14 H 0.07 3.96 7.91 -2.91 -0.02 3.94 15 15 C 0.04 1.95 4.24 85.20 0.36 2.31 15 16 N -0.80 -42.60 10.69 21.81 0.23 -42.37 15 17 Si 0.96 39.92 29.61 68.60 2.03 41.95 15 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 21 H 0.05 1.54 7.66 -2.39 -0.02 1.52 15 22 H 0.05 1.62 7.66 -2.39 -0.02 1.60 15 23 H 0.11 2.92 8.14 -2.39 -0.02 2.90 15 24 H 0.14 4.92 6.27 -2.91 -0.02 4.90 15 25 H 0.13 4.71 8.06 -2.91 -0.02 4.68 15 26 H 0.14 4.95 8.06 -2.91 -0.02 4.92 15 27 H 0.41 9.58 8.95 -92.71 -0.83 8.75 15 28 H 0.41 8.86 8.92 -92.71 -0.83 8.03 15 29 H 0.29 14.02 8.30 -92.71 -0.77 13.25 15 Total: -1.00 -66.63 263.64 2.31 -64.32 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.45 Total: 24.97 kcal Atomic # 6 Polarization: -54.95 SS G_CDS: 3.01 Total: -51.95 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.27 Total: -65.99 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.89 Total: -16.95 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.12 Total: 3.64 kcal Total: -66.63 2.31 -64.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396247607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.705 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds