Wall clock time and date at job start Mon Mar 30 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35976 * 116.99886 * 2 1 4 4 C 1.37329 * 119.77340 * 180.02562 * 3 2 1 5 5 C 1.42089 * 120.45462 * 179.97438 * 4 3 2 6 6 C 1.39807 * 128.37902 * 180.02562 * 5 4 3 7 7 C 1.36953 * 115.02011 * 180.02562 * 6 5 4 8 8 C 1.39955 * 124.85030 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00058 * 0.02562 * 8 7 6 10 10 C 1.40169 * 120.00323 * 180.02562 * 8 7 6 11 11 N 1.30771 * 119.99596 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00095 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47320 * 89.99978 * 12 10 8 14 14 H 1.48507 * 109.46818 * 209.99457 * 12 10 8 15 15 H 1.48495 * 109.46887 * 329.99527 * 12 10 8 16 16 S 1.75459 * 110.30451 * 359.97438 * 7 6 5 17 17 C 1.40129 * 118.69811 * 0.02562 * 5 4 3 18 18 C 1.40223 * 119.89758 * 359.95460 * 17 5 4 19 19 N 1.39868 * 119.80390 * 180.02562 * 18 17 5 20 20 C 1.38181 * 120.38992 * 0.04530 * 18 17 5 21 21 H 1.09001 * 109.47257 * 59.99715 * 1 2 3 22 22 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47597 * 300.00166 * 1 2 3 24 24 H 1.08002 * 119.76937 * 359.97438 * 4 3 2 25 25 H 1.08004 * 122.49328 * 0.02562 * 6 5 4 26 26 H 0.97001 * 119.99792 * 180.02562 * 11 10 8 27 27 H 0.96996 * 119.99942 * 180.02562 * 19 18 17 28 28 H 0.96997 * 120.00098 * 359.97438 * 19 18 17 29 29 H 1.07995 * 119.94973 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4179 1.2780 -0.0005 5 6 4.0780 2.5363 -0.0011 6 6 5.4518 2.7959 -0.0022 7 6 5.7905 4.1228 -0.0019 8 6 7.1012 4.6136 -0.0034 9 1 7.9349 3.9271 -0.0052 10 6 7.3319 5.9962 -0.0024 11 7 6.3224 6.8275 -0.0007 12 14 9.0813 6.6512 -0.0050 13 1 9.5423 6.8262 -1.4058 14 1 9.1209 7.9597 0.6962 15 1 9.9712 5.6886 0.6924 16 16 4.3467 5.1198 -0.0010 17 6 3.3021 3.7032 -0.0005 18 6 1.9028 3.6121 -0.0004 19 7 1.1303 4.7781 -0.0004 20 6 1.2827 2.3773 0.0001 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 3.9989 0.3676 -0.0005 25 1 6.1910 2.0085 -0.0031 26 1 6.4821 7.7843 -0.0004 27 1 0.1622 4.7184 0.0001 28 1 1.5626 5.6464 -0.0001 29 1 0.2045 2.3154 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396270607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:54:32 Heat of formation + Delta-G solvation = -23.954183 kcal Electronic energy + Delta-G solvation = -15236.527266 eV Core-core repulsion = 12635.865207 eV Total energy + Delta-G solvation = -2600.662058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.12896 -37.09082 -35.20037 -33.86499 -31.80407 -28.70994 -28.19287 -26.31307 -25.34745 -21.91180 -21.13691 -19.30586 -18.00860 -16.92309 -16.20513 -15.85354 -15.10788 -14.93017 -14.71610 -14.50853 -13.52349 -13.19342 -12.61121 -12.44766 -12.09811 -11.77096 -11.69821 -11.34101 -11.05167 -11.04224 -10.66867 -10.51153 -10.20381 -10.05371 -9.67237 -9.03635 -8.61673 -7.49676 -7.22840 -7.16953 -5.90784 -4.69857 2.17080 2.66877 2.84335 2.85566 2.91748 3.34588 3.59475 3.64265 3.89316 4.01987 4.58137 4.68432 5.17777 5.45581 5.51727 5.70451 5.95315 6.23152 6.45463 6.66610 6.70811 6.86630 7.04437 7.20810 7.38506 7.46580 7.69856 7.85371 7.96124 8.07151 8.32831 8.42416 8.46791 8.47885 9.65929 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.046411 B = 0.006063 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.166115 B = 4616.745506 C = 5204.767911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.167 3.833 4 C -0.236 4.236 5 C 0.084 3.916 6 C -0.366 4.366 7 C 0.065 3.935 8 C -0.383 4.383 9 H 0.099 0.901 10 C 0.053 3.947 11 N -0.776 5.776 12 Si 0.938 3.062 13 H -0.263 1.263 14 H -0.272 1.272 15 H -0.256 1.256 16 S 0.129 5.871 17 C -0.350 4.350 18 C 0.306 3.694 19 N -0.882 5.882 20 C -0.350 4.350 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.300 0.700 27 H 0.388 0.612 28 H 0.394 0.606 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 -0.442 -0.005 5.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.242 6.242 3 C 0.121 3.879 4 C -0.258 4.258 5 C 0.075 3.925 6 C -0.391 4.391 7 C -0.055 4.055 8 C -0.417 4.417 9 H 0.117 0.883 10 C -0.169 4.169 11 N -0.402 5.402 12 Si 0.761 3.239 13 H -0.188 1.188 14 H -0.196 1.196 15 H -0.180 1.180 16 S 0.388 5.612 17 C -0.467 4.467 18 C 0.198 3.802 19 N -0.421 5.421 20 C -0.376 4.376 21 H 0.066 0.934 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.113 0.887 27 H 0.215 0.785 28 H 0.222 0.778 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.739 1.084 -0.001 5.841 hybrid contribution 0.398 -0.802 -0.005 0.896 sum -5.341 0.281 -0.006 5.349 Atomic orbital electron populations 1.22809 0.80111 1.02251 1.00793 1.86005 1.20075 1.28407 1.89711 1.18110 0.91502 0.82457 0.95864 1.19674 0.90378 0.96413 1.19351 1.17456 0.92512 0.90602 0.91952 1.19588 0.92983 0.94739 1.31750 1.21413 0.96148 0.94297 0.93629 1.19359 0.92431 0.91921 1.38020 0.88281 1.26317 1.01171 0.96927 0.92447 1.68673 1.33031 1.05704 1.32806 0.85761 0.79638 0.78747 0.79736 1.18811 1.19632 1.17981 1.84400 0.94353 1.02992 1.79485 1.22991 0.95143 1.01788 1.26794 1.16677 0.87933 0.85736 0.89817 1.42515 1.07643 1.05976 1.85984 1.19813 0.97612 0.90830 1.29328 0.93414 0.89541 0.93422 0.87599 0.87458 0.88687 0.78496 0.77768 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 9.81 101.05 0.99 1.49 15 2 O -0.33 -6.28 10.48 -19.67 -0.21 -6.48 15 3 C 0.17 3.64 6.65 -39.50 -0.26 3.38 15 4 C -0.24 -5.62 10.01 -38.44 -0.38 -6.01 15 5 C 0.08 2.15 5.85 -107.12 -0.63 1.52 15 6 C -0.37 -9.59 10.14 -39.46 -0.40 -9.99 15 7 C 0.07 1.71 6.12 -39.40 -0.24 1.47 15 8 C -0.38 -9.53 9.27 -38.21 -0.35 -9.88 15 9 H 0.10 2.32 7.85 -52.49 -0.41 1.91 15 10 C 0.05 1.20 5.50 -17.28 -0.10 1.11 15 11 N -0.78 -17.99 10.59 55.56 0.59 -17.40 15 12 Si 0.94 16.89 29.56 -169.99 -5.03 11.87 15 13 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 14 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 15 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 16 S 0.13 3.17 19.54 -107.50 -2.10 1.07 15 17 C -0.35 -8.60 6.41 -38.13 -0.24 -8.84 15 18 C 0.31 6.60 6.77 -83.47 -0.57 6.03 15 19 N -0.88 -15.18 9.09 32.57 0.30 -14.88 15 20 C -0.35 -7.17 8.85 -39.19 -0.35 -7.52 15 21 H 0.05 0.62 7.65 -51.93 -0.40 0.22 15 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.05 0.62 7.65 -51.93 -0.40 0.22 15 24 H 0.11 2.40 8.06 -52.49 -0.42 1.98 15 25 H 0.11 2.69 8.06 -52.48 -0.42 2.27 15 26 H 0.30 6.20 8.29 -40.82 -0.34 5.86 15 27 H 0.39 5.36 8.83 -40.82 -0.36 5.00 15 28 H 0.39 6.63 8.29 -40.82 -0.34 6.29 15 29 H 0.11 1.87 6.27 -52.49 -0.33 1.54 15 LS Contribution 265.05 15.07 3.99 3.99 Total: -1.00 -28.47 265.05 -7.62 -36.09 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -2.64 Total: 12.98 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -2.53 Total: -27.24 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.88 Total: -32.28 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.21 Total: -6.48 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.10 Total: 1.07 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.47 -7.62 -36.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396270607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.137 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds