Wall clock time and date at job start Mon Mar 30 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35976 * 116.99886 * 2 1 4 4 C 1.37329 * 119.77340 * 180.02562 * 3 2 1 5 5 C 1.42089 * 120.45462 * 179.97438 * 4 3 2 6 6 C 1.39807 * 128.37902 * 180.02562 * 5 4 3 7 7 C 1.36953 * 115.02011 * 180.02562 * 6 5 4 8 8 C 1.39955 * 124.85030 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00058 * 0.02562 * 8 7 6 10 10 C 1.40169 * 120.00323 * 180.02562 * 8 7 6 11 11 N 1.30771 * 119.99596 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00095 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47320 * 89.99978 * 12 10 8 14 14 H 1.48507 * 109.46818 * 209.99457 * 12 10 8 15 15 H 1.48495 * 109.46887 * 329.99527 * 12 10 8 16 16 S 1.75459 * 110.30451 * 359.97438 * 7 6 5 17 17 C 1.40129 * 118.69811 * 0.02562 * 5 4 3 18 18 C 1.40223 * 119.89758 * 359.95460 * 17 5 4 19 19 N 1.39868 * 119.80390 * 180.02562 * 18 17 5 20 20 C 1.38181 * 120.38992 * 0.04530 * 18 17 5 21 21 H 1.09001 * 109.47257 * 59.99715 * 1 2 3 22 22 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47597 * 300.00166 * 1 2 3 24 24 H 1.08002 * 119.76937 * 359.97438 * 4 3 2 25 25 H 1.08004 * 122.49328 * 0.02562 * 6 5 4 26 26 H 0.97001 * 119.99792 * 180.02562 * 11 10 8 27 27 H 0.96996 * 119.99942 * 180.02562 * 19 18 17 28 28 H 0.96997 * 120.00098 * 359.97438 * 19 18 17 29 29 H 1.07995 * 119.94973 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4179 1.2780 -0.0005 5 6 4.0780 2.5363 -0.0011 6 6 5.4518 2.7959 -0.0022 7 6 5.7905 4.1228 -0.0019 8 6 7.1012 4.6136 -0.0034 9 1 7.9349 3.9271 -0.0052 10 6 7.3319 5.9962 -0.0024 11 7 6.3224 6.8275 -0.0007 12 14 9.0813 6.6512 -0.0050 13 1 9.5423 6.8262 -1.4058 14 1 9.1209 7.9597 0.6962 15 1 9.9712 5.6886 0.6924 16 16 4.3467 5.1198 -0.0010 17 6 3.3021 3.7032 -0.0005 18 6 1.9028 3.6121 -0.0004 19 7 1.1303 4.7781 -0.0004 20 6 1.2827 2.3773 0.0001 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 3.9989 0.3676 -0.0005 25 1 6.1910 2.0085 -0.0031 26 1 6.4821 7.7843 -0.0004 27 1 0.1622 4.7184 0.0001 28 1 1.5626 5.6464 -0.0001 29 1 0.2045 2.3154 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396270607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:54:31 Heat of formation + Delta-G solvation = -41.966726 kcal Electronic energy + Delta-G solvation = -15237.308348 eV Core-core repulsion = 12635.865207 eV Total energy + Delta-G solvation = -2601.443141 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73593 -38.71495 -36.95838 -35.57876 -33.48837 -30.49568 -29.68696 -27.72927 -27.11888 -23.64045 -22.85333 -21.06047 -19.80915 -18.50244 -17.83151 -17.56861 -16.57228 -16.45544 -16.19480 -16.06862 -15.26488 -14.79329 -14.32263 -14.10897 -13.63031 -13.47781 -13.26672 -13.07428 -12.54587 -12.42110 -12.25349 -12.02010 -11.93102 -11.77579 -11.32977 -10.94951 -10.28102 -9.30783 -8.96495 -8.91362 -7.68699 -6.59505 0.38675 0.90991 1.36538 1.36934 1.49517 1.54870 1.90598 1.95675 2.16147 2.58535 2.88146 3.11501 3.32818 4.30650 4.41658 4.48451 4.56944 4.70569 4.79972 4.90875 4.96705 5.20571 5.31597 5.35681 5.58383 5.62798 5.90611 6.00878 6.17816 6.43860 6.52033 6.59689 6.82206 7.09962 7.95372 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.046411 B = 0.006063 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.166115 B = 4616.745506 C = 5204.767911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.340 6.340 3 C 0.178 3.822 4 C -0.272 4.272 5 C 0.063 3.937 6 C -0.402 4.402 7 C 0.034 3.966 8 C -0.410 4.410 9 H 0.101 0.899 10 C 0.018 3.982 11 N -0.794 5.794 12 Si 1.014 2.986 13 H -0.256 1.256 14 H -0.257 1.257 15 H -0.255 1.255 16 S 0.133 5.867 17 C -0.377 4.377 18 C 0.305 3.695 19 N -0.863 5.863 20 C -0.344 4.344 21 H 0.059 0.941 22 H 0.120 0.880 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.313 0.687 27 H 0.408 0.592 28 H 0.398 0.602 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 0.457 0.000 6.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.255 6.255 3 C 0.131 3.869 4 C -0.294 4.294 5 C 0.054 3.946 6 C -0.427 4.427 7 C -0.085 4.085 8 C -0.444 4.444 9 H 0.119 0.881 10 C -0.202 4.202 11 N -0.420 5.420 12 Si 0.831 3.169 13 H -0.181 1.181 14 H -0.181 1.181 15 H -0.179 1.179 16 S 0.390 5.610 17 C -0.495 4.495 18 C 0.195 3.805 19 N -0.403 5.403 20 C -0.370 4.370 21 H 0.078 0.922 22 H 0.138 0.862 23 H 0.078 0.922 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.239 0.761 28 H 0.226 0.774 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.157 1.980 0.004 7.426 hybrid contribution 0.628 -1.134 -0.008 1.296 sum -6.528 0.847 -0.004 6.583 Atomic orbital electron populations 1.23247 0.76913 1.05048 1.01900 1.86000 1.23298 1.27062 1.89107 1.18184 0.91037 0.83972 0.93757 1.19757 0.91887 0.95737 1.22055 1.17664 0.92521 0.91939 0.92452 1.19699 0.93662 0.94887 1.34466 1.21784 0.97595 0.94809 0.94355 1.19710 0.92125 0.93559 1.39005 0.88130 1.27286 1.05683 0.96099 0.91094 1.68674 1.35075 1.06691 1.31517 0.84683 0.73754 0.78359 0.80060 1.18060 1.18059 1.17898 1.83988 0.93801 1.03053 1.80115 1.23220 0.96616 1.01226 1.28398 1.16832 0.87252 0.87528 0.88895 1.42399 1.08541 1.04852 1.84557 1.20169 0.99424 0.89739 1.27686 0.92204 0.86170 0.92210 0.88040 0.88377 0.87290 0.76121 0.77389 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 15 2 O -0.34 -12.39 10.48 -93.28 -0.98 -13.37 15 3 C 0.18 7.59 6.65 22.32 0.15 7.73 15 4 C -0.27 -13.38 10.01 23.01 0.23 -13.15 15 5 C 0.06 3.36 5.85 -21.49 -0.13 3.23 15 6 C -0.40 -22.47 10.14 22.35 0.23 -22.25 15 7 C 0.03 1.89 6.12 22.38 0.14 2.03 15 8 C -0.41 -21.08 9.27 23.16 0.21 -20.86 15 9 H 0.10 4.93 7.85 -2.91 -0.02 4.90 15 10 C 0.02 0.82 5.50 85.32 0.47 1.28 15 11 N -0.79 -36.59 10.59 21.87 0.23 -36.35 15 12 Si 1.01 33.71 29.56 68.60 2.03 35.74 15 13 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 14 H -0.26 -7.90 7.11 99.48 0.71 -7.19 15 15 H -0.26 -8.41 7.11 99.48 0.71 -7.70 15 16 S 0.13 6.65 19.54 -56.49 -1.10 5.55 15 17 C -0.38 -18.84 6.41 23.21 0.15 -18.69 15 18 C 0.30 12.75 6.77 38.33 0.26 13.01 15 19 N -0.86 -27.66 9.09 -50.88 -0.46 -28.12 15 20 C -0.34 -13.30 8.85 22.52 0.20 -13.10 15 21 H 0.06 1.30 7.65 -2.39 -0.02 1.28 15 22 H 0.12 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.06 1.30 7.65 -2.39 -0.02 1.28 15 24 H 0.10 4.87 8.06 -2.91 -0.02 4.84 15 25 H 0.10 5.37 8.06 -2.91 -0.02 5.35 15 26 H 0.31 12.60 8.29 -92.71 -0.77 11.83 15 27 H 0.41 9.82 8.83 -92.71 -0.82 9.00 15 28 H 0.40 12.65 8.29 -92.71 -0.77 11.88 15 29 H 0.15 4.42 6.27 -2.91 -0.02 4.40 15 Total: -1.00 -63.62 265.05 2.35 -61.26 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -0.38 Total: 34.39 kcal Atomic # 6 Polarization: -62.12 SS G_CDS: 3.02 Total: -59.10 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.23 Total: -64.48 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.98 Total: -13.37 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 2.03 Total: 35.74 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.10 Total: 5.55 kcal Total: -63.62 2.35 -61.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396270607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.295 kcal (2) G-P(sol) polarization free energy of solvation -63.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds