Wall clock time and date at job start Mon Mar 30 2020 21:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38259 * 119.99691 * 2 1 4 4 C 1.38208 * 119.99974 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00064 * 359.76859 * 4 3 2 6 6 C 1.38211 * 119.99615 * 0.46144 * 5 4 3 7 7 C 1.50702 * 119.99910 * 179.79220 * 6 5 4 8 8 O 1.45209 * 109.46494 * 269.72641 * 7 6 5 9 9 C 1.34664 * 116.99312 * 179.97438 * 8 7 6 10 10 O 1.21508 * 120.00589 * 359.73271 * 9 8 7 11 11 N 1.34783 * 119.99520 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99982 * 359.73323 * 11 9 8 13 13 C 1.37195 * 119.99820 * 179.72692 * 11 9 8 14 14 H 1.08005 * 120.00171 * 23.25703 * 13 11 9 15 15 C 1.38883 * 120.00079 * 203.25945 * 13 11 9 16 16 N 1.31466 * 119.99888 * 11.29114 * 15 13 11 17 17 Si 1.86805 * 120.00103 * 191.29481 * 15 13 11 18 18 H 1.48505 * 109.46988 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47360 * 119.99603 * 17 15 13 20 20 H 1.48499 * 109.46743 * 239.99764 * 17 15 13 21 21 C 1.38204 * 120.00212 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47054 * 270.02136 * 1 2 3 23 23 H 1.08992 * 109.47207 * 30.02647 * 1 2 3 24 24 H 1.09006 * 109.46743 * 150.02475 * 1 2 3 25 25 H 1.08002 * 119.99703 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.99738 * 179.97438 * 4 3 2 27 27 H 1.07999 * 119.99785 * 180.25159 * 5 4 3 28 28 H 1.08992 * 109.47524 * 149.73095 * 7 6 5 29 29 H 1.08993 * 109.47326 * 29.72177 * 7 6 5 30 30 H 1.09000 * 109.47270 * 94.03724 * 12 11 9 31 31 H 1.09002 * 109.46675 * 214.03763 * 12 11 9 32 32 H 1.08999 * 109.47314 * 334.03798 * 12 11 9 33 33 H 0.97002 * 119.99732 * 180.02562 * 16 15 13 34 34 H 1.07999 * 120.00332 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0059 6 6 3.5807 -1.1968 0.0011 7 6 4.3342 -2.5019 0.0022 8 8 4.5763 -2.9220 -1.3665 9 6 5.2443 -4.0781 -1.5419 10 8 5.6191 -4.7157 -0.5779 11 7 5.5016 -4.5254 -2.7871 12 6 5.0493 -3.7570 -3.9494 13 6 6.1871 -5.7003 -2.9659 14 1 6.1965 -6.4445 -2.1833 15 6 6.8690 -5.9326 -4.1533 16 7 7.0469 -4.9529 -5.0116 17 14 7.5332 -7.6373 -4.5308 18 1 7.2034 -8.5561 -3.4116 19 1 6.9174 -8.1422 -5.7842 20 1 9.0073 -7.5686 -4.6963 21 6 2.1981 -1.1969 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8903 -0.5135 25 1 1.6582 2.1327 -0.0004 26 1 4.1203 2.1328 0.0001 27 1 5.3517 0.0003 0.0104 28 1 3.7452 -3.2612 0.5165 29 1 5.2866 -2.3711 0.5159 30 1 5.8513 -3.0992 -4.2846 31 1 4.7799 -4.4407 -4.7545 32 1 4.1804 -3.1593 -3.6742 33 1 7.5228 -5.1153 -5.8411 34 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258564666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:53:50 Heat of formation + Delta-G solvation = -51.943733 kcal Electronic energy + Delta-G solvation = -17549.287827 eV Core-core repulsion = 14640.492274 eV Total energy + Delta-G solvation = -2908.795553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.61957 -38.88969 -36.02121 -34.42880 -32.99983 -31.75924 -31.31659 -27.11778 -26.43851 -26.10743 -24.25865 -22.07182 -20.72810 -20.09631 -17.23565 -16.70927 -16.49596 -15.87236 -15.63669 -14.96989 -14.72607 -14.33724 -13.83612 -13.45872 -13.19695 -12.99178 -12.92131 -12.31132 -12.16094 -11.71380 -11.67984 -11.35091 -11.18899 -11.00741 -10.87279 -10.85573 -10.30503 -10.28943 -9.75742 -9.13565 -9.03368 -8.80165 -8.61124 -7.72542 -6.28277 -3.89580 1.27242 1.41257 3.18051 3.23693 3.29992 3.44365 3.94596 4.11668 4.32243 4.77343 4.80326 4.93194 5.14754 5.17108 5.28176 5.42471 5.49689 5.52608 5.67170 5.70617 5.78588 5.85545 6.07347 6.14258 6.46758 6.55541 6.57330 6.69181 6.96159 7.01619 7.24112 7.36712 7.58834 8.18888 8.44774 9.15990 9.39309 10.03402 10.75972 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043019 B = 0.004421 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.724084 B = 6332.395719 C = 6381.442887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.080 4.080 7 C 0.129 3.871 8 O -0.375 6.375 9 C 0.587 3.413 10 O -0.613 6.613 11 N -0.431 5.431 12 C 0.122 3.878 13 C -0.299 4.299 14 H 0.101 0.899 15 C 0.029 3.971 16 N -0.883 5.883 17 Si 0.933 3.067 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.097 4.097 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.267 0.733 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 10.996 6.248 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.119 4.119 6 C -0.080 4.080 7 C 0.054 3.946 8 O -0.291 6.291 9 C 0.341 3.659 10 O -0.507 6.507 11 N -0.157 5.157 12 C -0.021 4.021 13 C -0.426 4.426 14 H 0.119 0.881 15 C -0.174 4.174 16 N -0.523 5.523 17 Si 0.760 3.240 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.115 4.115 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.710 10.866 6.353 15.897 hybrid contribution 0.507 -0.701 -0.304 0.917 sum -9.203 10.165 6.049 14.987 Atomic orbital electron populations 1.20774 0.91198 1.02801 1.02148 1.19888 0.96057 0.93068 1.00403 1.21025 0.94289 0.97349 1.00954 1.21102 0.94267 0.97865 1.00672 1.21121 1.00212 0.91808 0.98750 1.19695 0.93634 0.94183 1.00530 1.21389 0.99200 0.92079 0.81980 1.86269 1.73089 1.40099 1.29608 1.18298 0.81627 0.80417 0.85521 1.90786 1.60185 1.59967 1.39752 1.42483 1.50870 1.21547 1.00840 1.21423 0.97006 0.95411 0.88306 1.19668 1.28427 0.91724 1.02754 0.88144 1.25380 0.96027 0.99405 0.96552 1.70064 1.40849 1.30765 1.10573 0.85758 0.78375 0.81486 0.78429 1.19178 1.20601 1.20689 1.20991 0.93431 0.97821 0.99240 0.91323 0.91651 0.91443 0.86238 0.85961 0.85755 0.91250 0.91094 0.92291 0.91698 0.94873 0.92293 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.63 16 2 C -0.09 -1.11 5.88 -104.62 -0.62 -1.73 16 3 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 4 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 5 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 6 C -0.08 -1.24 5.52 -104.62 -0.58 -1.81 16 7 C 0.13 2.36 5.60 36.01 0.20 2.56 16 8 O -0.38 -8.50 8.97 -40.39 -0.36 -8.87 16 9 C 0.59 15.68 8.35 54.06 0.45 16.13 16 10 O -0.61 -17.69 15.83 -19.28 -0.31 -18.00 16 11 N -0.43 -11.88 3.02 -127.66 -0.39 -12.26 16 12 C 0.12 2.99 8.73 59.84 0.52 3.52 16 13 C -0.30 -8.59 9.27 -14.91 -0.14 -8.73 16 14 H 0.10 2.97 7.42 -52.48 -0.39 2.58 16 15 C 0.03 0.79 5.13 -17.47 -0.09 0.70 16 16 N -0.88 -24.16 10.64 55.49 0.59 -23.57 16 17 Si 0.93 20.98 29.57 -169.99 -5.03 15.96 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.10 -1.33 9.36 -39.59 -0.37 -1.70 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.49 8.09 -51.93 -0.42 0.08 16 24 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 29 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 30 H 0.06 1.50 7.41 -51.93 -0.38 1.11 16 31 H 0.06 1.61 7.24 -51.93 -0.38 1.23 16 32 H 0.03 0.73 7.25 -51.93 -0.38 0.35 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -32.08 296.99 -6.89 -38.97 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.45 Total: 0.29 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.42 Total: 3.00 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.21 Total: -35.83 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.67 Total: -26.86 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.08 -6.89 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258564666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.972 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds