Wall clock time and date at job start Mon Mar 30 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47121 * 2 1 4 4 C 1.38159 * 120.03155 * 265.00069 * 3 2 1 5 5 C 1.38251 * 120.06055 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.10583 * 359.97438 * 5 4 3 7 7 C 1.38121 * 120.06124 * 359.97438 * 6 5 4 8 8 C 1.38712 * 120.02487 * 84.99584 * 3 2 1 9 9 O 1.35924 * 120.05942 * 0.02562 * 8 3 2 10 10 C 1.34691 * 117.00172 * 84.48895 * 9 8 3 11 11 O 1.21513 * 120.00196 * 6.01185 * 10 9 8 12 12 N 1.34776 * 119.99855 * 186.00546 * 10 9 8 13 13 C 1.46499 * 120.00128 * 359.97438 * 12 10 9 14 14 C 1.37175 * 120.00019 * 180.02562 * 12 10 9 15 15 H 1.08003 * 120.00566 * 24.22568 * 14 12 10 16 16 C 1.38893 * 119.99898 * 204.23703 * 14 12 10 17 17 N 1.31455 * 120.00481 * 9.82722 * 16 14 12 18 18 Si 1.86810 * 119.99863 * 189.83589 * 16 14 12 19 19 H 1.48495 * 109.47026 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46881 * 119.99635 * 18 16 14 21 21 H 1.48496 * 109.46949 * 239.99719 * 18 16 14 22 22 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47049 * 299.99775 * 1 2 3 24 24 H 1.09006 * 109.46736 * 59.99751 * 1 2 3 25 25 H 1.08997 * 109.47049 * 240.00225 * 2 1 3 26 26 H 1.08999 * 109.47131 * 119.99719 * 2 1 3 27 27 H 1.08001 * 119.97300 * 0.04383 * 4 3 2 28 28 H 1.07995 * 119.94569 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.97087 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.02850 * 179.74191 * 7 6 5 31 31 H 1.09000 * 109.46786 * 94.62740 * 13 12 10 32 32 H 1.09002 * 109.47105 * 214.62397 * 13 12 10 33 33 H 1.08997 * 109.47493 * 334.62981 * 13 12 10 34 34 H 0.96999 * 120.00788 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0380 -1.1916 5 6 2.8225 3.3412 -1.1922 6 6 2.9557 4.0305 -0.0008 7 6 2.6274 3.4184 1.1930 8 6 2.1650 2.1101 1.1964 9 8 1.8426 1.5051 2.3701 10 6 2.7912 0.7408 2.9448 11 8 3.9103 0.7039 2.4728 12 7 2.4991 0.0169 4.0435 13 6 1.1500 0.0618 4.6130 14 6 3.4652 -0.7611 4.6292 15 1 4.5092 -0.5223 4.4892 16 6 3.1009 -1.8562 5.4020 17 7 1.8511 -2.2635 5.4172 18 14 4.3870 -2.7501 6.4201 19 1 5.7083 -2.0996 6.2304 20 1 4.0087 -2.6944 7.8550 21 1 4.4663 -4.1673 5.9838 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2574 1.5020 -2.1234 28 1 3.0786 3.8220 -2.1247 29 1 3.3167 5.0483 -0.0038 30 1 2.7355 3.9558 2.1236 31 1 0.5623 -0.7682 4.2208 32 1 1.2111 -0.0172 5.6985 33 1 0.6730 1.0040 4.3435 34 1 1.5966 -3.0280 5.9571 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258994607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:50:29 Heat of formation + Delta-G solvation = -42.757228 kcal Electronic energy + Delta-G solvation = -18417.083276 eV Core-core repulsion = 15508.686080 eV Total energy + Delta-G solvation = -2908.397196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42422 -38.33287 -36.16636 -34.55222 -33.80236 -31.65395 -30.00317 -28.86656 -26.34129 -24.86373 -23.63309 -22.55232 -21.02796 -20.02546 -17.38814 -17.07580 -16.56261 -16.10437 -15.62420 -14.78372 -14.30228 -14.07790 -13.56781 -13.51472 -13.33982 -12.94211 -12.54643 -12.27316 -11.81956 -11.60642 -11.46822 -11.27985 -11.21948 -10.93473 -10.91134 -10.58413 -10.35317 -10.33487 -9.91114 -9.28306 -9.09558 -8.57027 -8.22804 -7.80028 -6.34341 -3.97531 1.45934 1.60381 3.14484 3.20978 3.27164 3.45903 3.99182 4.08112 4.31385 4.99857 5.04677 5.10500 5.21804 5.33679 5.42830 5.61605 5.69184 5.76486 5.81869 6.04849 6.15859 6.23974 6.37558 6.50611 6.55669 6.62173 6.67722 6.87246 6.89145 6.98974 7.26448 7.50867 7.63289 8.10332 8.38172 9.09614 9.29652 9.95214 10.69393 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.006342 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.802730 B = 4414.256642 C = 4708.384671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.110 4.110 5 C -0.128 4.128 6 C -0.116 4.116 7 C -0.123 4.123 8 C 0.132 3.868 9 O -0.321 6.321 10 C 0.585 3.415 11 O -0.595 6.595 12 N -0.426 5.426 13 C 0.119 3.881 14 C -0.300 4.300 15 H 0.101 0.899 16 C 0.032 3.968 17 N -0.881 5.881 18 Si 0.934 3.066 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.280 1.280 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 6.973 -8.409 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.128 4.128 5 C -0.146 4.146 6 C -0.134 4.134 7 C -0.141 4.141 8 C 0.089 3.911 9 O -0.235 6.235 10 C 0.340 3.660 11 O -0.487 6.487 12 N -0.152 5.152 13 C -0.025 4.025 14 C -0.427 4.427 15 H 0.119 0.881 16 C -0.172 4.172 17 N -0.521 5.521 18 Si 0.760 3.240 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.206 1.206 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.128 6.825 -8.432 11.290 hybrid contribution 0.530 -0.502 0.569 0.925 sum -2.599 6.323 -7.863 10.419 Atomic orbital electron populations 1.21683 0.94501 1.01669 1.01856 1.20463 0.96244 0.92240 1.03268 1.20149 0.99112 0.96593 0.92534 1.20856 1.00023 0.95093 0.96852 1.21060 1.00785 0.94831 0.97918 1.20900 1.00673 0.99872 0.91952 1.21275 0.98842 0.95028 0.98987 1.18137 0.98223 0.91015 0.83721 1.84218 1.43311 1.61449 1.34545 1.18495 0.82912 0.82339 0.82241 1.90833 1.21608 1.70281 1.65985 1.42459 1.12185 1.40112 1.20460 1.21489 0.83022 0.98429 0.99535 1.19666 0.88899 1.07158 1.26981 0.88138 1.25393 0.97318 0.95846 0.98617 1.70036 1.16537 1.25778 1.39700 0.85744 0.80382 0.78980 0.78890 1.19154 1.20529 1.20604 0.92432 0.92104 0.93102 0.91288 0.90369 0.85899 0.86109 0.85879 0.85668 0.91948 0.91570 0.94847 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.90 37.16 0.37 -1.72 16 2 C -0.08 -1.48 5.78 -27.88 -0.16 -1.64 16 3 C -0.08 -1.50 5.14 -104.48 -0.54 -2.04 16 4 C -0.11 -1.64 9.68 -39.61 -0.38 -2.02 16 5 C -0.13 -1.72 10.04 -39.56 -0.40 -2.12 16 6 C -0.12 -1.65 10.04 -39.61 -0.40 -2.05 16 7 C -0.12 -2.15 9.99 -39.43 -0.39 -2.54 16 8 C 0.13 2.66 4.92 -39.21 -0.19 2.47 16 9 O -0.32 -7.31 8.21 -24.73 -0.20 -7.51 16 10 C 0.58 15.36 7.07 54.06 0.38 15.75 16 11 O -0.60 -17.20 15.84 -19.28 -0.31 -17.50 16 12 N -0.43 -11.42 3.02 -127.65 -0.39 -11.81 16 13 C 0.12 2.81 8.74 59.85 0.52 3.33 16 14 C -0.30 -8.45 9.26 -14.92 -0.14 -8.59 16 15 H 0.10 2.93 7.43 -52.48 -0.39 2.54 16 16 C 0.03 0.84 5.16 -17.47 -0.09 0.75 16 17 N -0.88 -23.48 10.62 55.49 0.59 -22.89 16 18 Si 0.93 20.67 29.56 -169.99 -5.03 15.65 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 26 H 0.08 1.68 6.66 -51.93 -0.35 1.33 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.06 1.52 7.36 -51.93 -0.38 1.14 16 32 H 0.07 1.59 7.31 -51.93 -0.38 1.21 16 33 H 0.03 0.70 7.23 -51.93 -0.38 0.32 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -31.11 293.31 -6.71 -37.83 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.39 Total: 2.25 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.42 Total: -0.44 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.20 Total: -34.70 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.51 Total: -25.01 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.11 -6.71 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258994607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.932 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds