Wall clock time and date at job start Mon Mar 30 2020 21:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46902 * 2 1 4 4 C 1.53000 * 109.47088 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47088 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46980 * 180.02562 * 5 4 3 7 7 C 1.39782 * 120.00087 * 180.02562 * 6 5 4 8 8 C 1.38956 * 120.00487 * 359.72338 * 7 6 5 9 9 C 1.38013 * 119.99008 * 179.72309 * 8 7 6 10 10 C 1.38899 * 120.00511 * 0.55423 * 9 8 7 11 11 O 1.35798 * 119.98862 * 179.69977 * 10 9 8 12 12 C 1.34818 * 116.99804 * 174.48089 * 11 10 9 13 13 H 1.07997 * 119.99862 * 5.05034 * 12 11 10 14 14 C 1.38618 * 119.99980 * 185.06170 * 12 11 10 15 15 N 1.31583 * 120.00081 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99913 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47064 * 90.00834 * 16 14 12 18 18 H 1.48501 * 109.46801 * 210.00367 * 16 14 12 19 19 H 1.48492 * 109.47158 * 330.00530 * 16 14 12 20 20 C 1.38893 * 120.01764 * 359.72264 * 10 9 8 21 21 C 1.38018 * 120.00244 * 359.97438 * 20 10 9 22 22 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47250 * 299.99747 * 1 2 3 24 24 H 1.09006 * 109.47437 * 60.00177 * 1 2 3 25 25 H 1.08999 * 109.47250 * 240.00253 * 2 1 3 26 26 H 1.08997 * 109.47028 * 120.00299 * 2 1 3 27 27 H 1.08999 * 109.46961 * 60.00077 * 3 2 1 28 28 H 1.08997 * 109.47523 * 299.99996 * 3 2 1 29 29 H 1.09008 * 109.46697 * 60.00372 * 4 3 2 30 30 H 1.08997 * 109.47217 * 300.00528 * 4 3 2 31 31 H 1.08999 * 109.46961 * 60.00422 * 5 4 3 32 32 H 1.08997 * 109.47523 * 300.00341 * 5 4 3 33 33 H 0.97006 * 120.00257 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.00178 * 0.02562 * 8 7 6 35 35 H 1.07995 * 119.99091 * 180.25449 * 9 8 7 36 36 H 0.96992 * 119.99873 * 179.97438 * 15 14 12 37 37 H 1.07997 * 120.00388 * 179.97438 * 20 10 9 38 38 H 1.07998 * 119.99940 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 5.5449 2.8851 0.0000 7 6 6.2438 4.0956 0.0000 8 6 5.5491 5.2991 -0.0058 9 6 6.2395 6.4941 0.0000 10 6 7.6284 6.4939 0.0000 11 8 8.3074 7.6700 -0.0005 12 6 9.6489 7.6023 0.1150 13 1 10.1426 6.6418 0.1204 14 6 10.3945 8.7655 0.2272 15 7 11.7038 8.6995 0.3394 16 14 9.5404 10.4269 0.2175 17 1 9.1910 10.8119 1.6084 18 1 10.4489 11.4470 -0.3651 19 1 8.3027 10.3424 -0.5986 20 6 8.3231 5.2912 -0.0001 21 6 7.6333 4.0958 0.0005 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9336 0.9286 -0.8892 30 1 3.9329 0.9288 0.8908 31 1 3.7162 3.3993 0.8896 32 1 3.7169 3.3984 -0.8904 33 1 6.0299 2.0450 0.0000 34 1 4.4691 5.2992 -0.0099 35 1 5.6996 7.4294 -0.0004 36 1 12.2255 9.5134 0.4175 37 1 9.4031 5.2913 -0.0005 38 1 8.1735 3.1606 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020126607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:51:34 Heat of formation + Delta-G solvation = -21.320441 kcal Electronic energy + Delta-G solvation = -17027.875670 eV Core-core repulsion = 14256.241137 eV Total energy + Delta-G solvation = -2771.634533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.15357 -37.53849 -36.28881 -34.25228 -32.22680 -31.07874 -30.19538 -27.70221 -25.79388 -24.49095 -22.74700 -21.63856 -21.13745 -20.48223 -17.67653 -17.28614 -16.33285 -16.15605 -15.37026 -14.59493 -14.43375 -13.95449 -13.83966 -13.65643 -13.47775 -13.17201 -12.86124 -12.67706 -12.22969 -12.07566 -11.84023 -11.75789 -11.60866 -11.28331 -11.19096 -10.87330 -10.85852 -10.73725 -10.57127 -10.07575 -9.26901 -9.18406 -8.52047 -8.22115 -6.47431 -6.28488 -3.92831 2.14509 2.50174 3.29726 3.33187 3.48711 3.77617 4.34540 4.54053 4.59889 4.63768 4.77752 4.96143 5.04262 5.07230 5.22569 5.29412 5.39712 5.44608 5.56374 5.61314 5.62160 5.69652 5.76364 5.78308 5.88903 6.06046 6.06184 6.16547 6.20326 6.47617 6.81079 6.84636 7.03629 7.37330 7.51405 7.81958 7.95871 8.13016 8.24448 9.08207 9.74620 10.80143 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.064826 B = 0.003229 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.823519 B = 8670.518608 C = 9061.338750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.130 4.130 5 C 0.133 3.867 6 N -0.761 5.761 7 C 0.132 3.868 8 C -0.150 4.150 9 C -0.149 4.149 10 C 0.116 3.884 11 O -0.228 6.228 12 C -0.384 4.384 13 H 0.103 0.897 14 C 0.059 3.941 15 N -0.888 5.888 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.176 4.176 21 C -0.145 4.145 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.391 0.609 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.277 0.723 37 H 0.134 0.866 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.893 -14.410 -0.605 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.168 4.168 5 C 0.008 3.992 6 N -0.396 5.396 7 C 0.033 3.967 8 C -0.172 4.172 9 C -0.169 4.169 10 C 0.065 3.935 11 O -0.135 6.135 12 C -0.460 4.460 13 H 0.120 0.880 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.195 4.195 21 C -0.167 4.167 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.224 0.776 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.955 -13.968 -0.607 22.756 hybrid contribution 0.126 0.309 0.040 0.336 sum -17.829 -13.658 -0.567 22.467 Atomic orbital electron populations 1.21784 0.95912 1.01522 1.01878 1.21527 0.95832 0.96865 1.02008 1.21534 0.94647 0.96919 1.02438 1.21767 0.95869 0.96662 1.02489 1.21134 0.81428 0.96189 1.00485 1.44266 1.04095 1.05035 1.86252 1.17474 0.90829 0.85784 1.02576 1.20166 0.98217 0.90610 1.08223 1.20013 0.91345 0.97561 1.07986 1.18961 0.91122 0.85901 0.97507 1.83575 1.21307 1.26270 1.82340 1.20706 0.77630 0.96639 1.50993 0.87962 1.24429 0.94811 0.98950 0.96097 1.69663 1.04410 1.29734 1.48980 0.86179 0.79794 0.81884 0.78990 1.20091 1.21030 1.18464 1.21110 1.00853 0.91349 1.06209 1.20296 0.91680 0.97544 1.07181 0.92876 0.92717 0.92726 0.92062 0.92058 0.91729 0.91726 0.91573 0.91560 0.93118 0.93129 0.77585 0.87018 0.86565 0.91339 0.84883 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 4 C -0.13 -1.07 5.33 -26.73 -0.14 -1.22 16 5 C 0.13 1.45 4.91 -4.04 -0.02 1.43 16 6 N -0.76 -10.16 5.74 -58.58 -0.34 -10.50 16 7 C 0.13 2.27 6.66 -83.70 -0.56 1.71 16 8 C -0.15 -2.66 9.31 -39.40 -0.37 -3.03 16 9 C -0.15 -3.05 9.98 -39.42 -0.39 -3.45 16 10 C 0.12 2.76 6.65 -39.09 -0.26 2.50 16 11 O -0.23 -6.22 8.58 -0.06 0.00 -6.22 16 12 C -0.38 -11.12 9.94 30.87 0.31 -10.81 16 13 H 0.10 3.02 5.43 -52.49 -0.28 2.73 16 14 C 0.06 1.70 5.49 -17.52 -0.10 1.60 16 15 N -0.89 -26.36 13.96 55.48 0.77 -25.58 16 16 Si 0.91 22.34 28.62 -169.99 -4.86 17.47 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.18 -3.89 9.16 -39.42 -0.36 -4.25 16 21 C -0.14 -2.70 9.89 -39.40 -0.39 -3.09 16 22 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.57 7.96 -51.93 -0.41 0.16 16 32 H 0.05 0.57 7.94 -51.93 -0.41 0.16 16 33 H 0.39 4.56 8.49 -40.82 -0.35 4.22 16 34 H 0.11 1.69 6.73 -52.49 -0.35 1.33 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.13 3.09 5.63 -52.49 -0.30 2.79 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -30.39 316.47 -7.76 -38.15 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.89 Total: 3.02 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.21 Total: -21.11 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.44 Total: -36.08 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.00 Total: -6.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.39 -7.76 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.829 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds