Wall clock time and date at job start Mon Mar 30 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47559 * 2 1 4 4 N 1.46899 * 109.47146 * 240.00284 * 2 1 3 5 5 C 1.53001 * 109.47334 * 120.00449 * 2 1 3 6 6 C 1.50704 * 109.47189 * 184.99829 * 5 2 1 7 7 C 1.38282 * 119.97111 * 90.00198 * 6 5 2 8 8 C 1.38240 * 120.11355 * 179.97438 * 7 6 5 9 9 C 1.38169 * 120.05585 * 0.02562 * 8 7 6 10 10 C 1.38719 * 119.93968 * 359.97299 * 9 8 7 11 11 O 1.35905 * 120.05115 * 179.97438 * 10 9 8 12 12 C 1.42891 * 117.00240 * 0.02562 * 11 10 9 13 13 C 1.53001 * 109.47338 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47421 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99985 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99926 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47284 * 89.99696 * 18 16 14 20 20 H 1.48498 * 109.46891 * 210.00079 * 18 16 14 21 21 H 1.48503 * 109.47100 * 329.99669 * 18 16 14 22 22 C 1.38124 * 119.97206 * 270.22895 * 6 5 2 23 23 H 1.09004 * 109.46896 * 299.99681 * 1 2 3 24 24 H 1.08995 * 109.47236 * 59.99558 * 1 2 3 25 25 H 1.08997 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.00899 * 110.99978 * 299.99950 * 4 2 1 27 27 H 1.00903 * 110.99989 * 63.95207 * 4 2 1 28 28 H 1.08995 * 109.47120 * 64.99676 * 5 2 1 29 29 H 1.08998 * 109.47125 * 304.99822 * 5 2 1 30 30 H 1.08001 * 119.94768 * 359.97438 * 7 6 5 31 31 H 1.08003 * 119.97763 * 179.97438 * 8 7 6 32 32 H 1.07996 * 120.03568 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47220 * 299.99819 * 12 11 10 34 34 H 1.08996 * 109.47672 * 59.99762 * 12 11 10 35 35 H 1.09002 * 109.46746 * 300.00021 * 13 12 11 36 36 H 1.08996 * 109.47004 * 59.99266 * 13 12 11 37 37 H 0.97002 * 119.99939 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.02871 * 0.04642 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 3.5420 -0.6150 1.3126 7 6 4.1321 0.4497 1.9686 8 6 5.5095 0.5499 2.0290 9 6 6.3002 -0.4139 1.4333 10 6 5.7107 -1.4830 0.7747 11 8 6.4863 -2.4320 0.1875 12 6 7.9020 -2.2662 0.2878 13 6 8.6030 -3.4225 -0.4281 14 6 10.0960 -3.2479 -0.3218 15 1 10.5042 -2.3970 0.2035 16 6 10.9410 -4.1739 -0.8959 17 7 10.4440 -5.2097 -1.5359 18 14 12.7918 -3.9571 -0.7648 19 1 13.2841 -4.6361 0.4606 20 1 13.4456 -4.5528 -1.9575 21 1 13.1168 -2.5098 -0.6932 22 6 4.3280 -1.5787 0.7114 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6961 -1.6479 -1.2228 27 1 1.7502 -0.1989 -2.0373 28 1 1.7517 -1.7715 1.2055 29 1 1.6055 -0.2619 2.1369 30 1 3.5158 1.2044 2.4346 31 1 5.9680 1.3826 2.5416 32 1 7.3763 -0.3351 1.4804 33 1 8.1911 -1.3233 -0.1764 34 1 8.1935 -2.2584 1.3380 35 1 8.3139 -4.3656 0.0358 36 1 8.3114 -3.4298 -1.4783 37 1 11.0385 -5.8614 -1.9396 38 1 3.8666 -2.4077 0.1954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037726486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:51:00 Heat of formation + Delta-G solvation = -39.339254 kcal Electronic energy + Delta-G solvation = -17386.443452 eV Core-core repulsion = 14614.027565 eV Total energy + Delta-G solvation = -2772.415887 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70889 -37.74853 -36.11060 -33.33203 -31.57851 -30.71372 -29.29257 -28.82906 -26.56494 -24.88658 -22.26418 -21.87831 -20.92643 -19.96748 -17.48986 -16.42803 -16.14375 -15.54219 -15.38781 -15.19498 -14.68003 -14.41249 -14.23948 -13.60896 -13.36538 -12.84705 -12.67473 -12.45999 -12.28748 -12.10734 -11.83541 -11.33340 -11.22783 -11.10670 -11.03326 -10.79050 -10.64825 -10.32938 -9.77477 -9.60368 -9.25420 -8.78580 -8.46620 -8.40601 -7.68608 -6.06944 -4.11252 1.66406 1.84385 3.29723 3.35504 3.38653 3.94513 4.08750 4.37145 4.44383 4.71373 4.82608 5.03018 5.13768 5.22150 5.29390 5.30674 5.42066 5.52396 5.64206 5.66887 5.70096 5.85064 5.95090 6.02156 6.11540 6.17915 6.37421 6.66880 6.72038 6.85995 6.86897 7.04663 7.16043 7.33437 7.56859 7.69711 7.87330 8.17070 8.29048 8.94445 9.52760 11.04700 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.041224 B = 0.003697 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.059112 B = 7571.290306 C = 8052.667737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.092 3.908 3 H 0.081 0.919 4 N -0.838 5.838 5 C -0.072 4.072 6 C -0.036 4.036 7 C -0.174 4.174 8 C -0.083 4.083 9 C -0.218 4.218 10 C 0.143 3.857 11 O -0.317 6.317 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.134 4.134 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.339 0.661 27 H 0.339 0.661 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.190 10.956 4.997 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.020 4.020 3 H 0.099 0.901 4 N -0.367 5.367 5 C -0.110 4.110 6 C -0.036 4.036 7 C -0.192 4.192 8 C -0.101 4.101 9 C -0.237 4.237 10 C 0.096 3.904 11 O -0.230 6.230 12 C -0.008 4.008 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.152 4.152 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.437 10.751 5.073 21.104 hybrid contribution 0.219 0.152 -0.140 0.301 sum -17.218 10.903 4.933 20.968 Atomic orbital electron populations 1.22678 0.97911 1.01999 1.02156 1.21408 0.91310 0.98596 0.90641 0.90099 1.58806 1.67546 1.06297 1.04023 1.20635 0.91909 1.01200 0.97207 1.19305 0.94441 0.93920 0.95963 1.20732 0.94610 0.99371 1.04486 1.20801 0.93538 0.97747 0.97987 1.21327 1.00655 0.96963 1.04709 1.19208 0.91305 0.88312 0.91550 1.86160 1.20453 1.45229 1.71138 1.23282 0.75134 1.01976 1.00414 1.19115 0.93855 0.91970 0.96226 1.20988 0.90376 1.09308 1.35707 0.92394 1.24991 0.99189 0.95058 0.94972 1.69980 1.35201 1.12201 1.35429 0.86491 0.84869 0.78401 0.77647 1.20517 1.21064 1.19764 1.20158 0.90131 1.01350 1.03601 0.92105 0.92738 0.92611 0.84812 0.84818 0.91082 0.90729 0.86944 0.86554 0.85581 0.93264 0.93301 0.95460 0.95400 0.92743 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 9.48 37.16 0.35 -0.91 16 2 C 0.09 0.81 3.34 -67.71 -0.23 0.58 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 N -0.84 -8.02 8.60 -4.67 -0.04 -8.06 16 5 C -0.07 -0.70 4.99 -27.88 -0.14 -0.84 16 6 C -0.04 -0.48 4.95 -104.65 -0.52 -1.00 16 7 C -0.17 -2.26 9.70 -39.56 -0.38 -2.64 16 8 C -0.08 -1.17 10.04 -39.61 -0.40 -1.57 16 9 C -0.22 -3.67 9.04 -39.43 -0.36 -4.02 16 10 C 0.14 2.66 6.69 -39.22 -0.26 2.40 16 11 O -0.32 -6.87 10.14 -19.44 -0.20 -7.07 16 12 C 0.07 1.48 4.68 37.16 0.17 1.65 16 13 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 14 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.13 -2.15 9.23 -39.44 -0.36 -2.52 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.34 2.94 9.00 -39.29 -0.35 2.58 16 27 H 0.34 2.76 9.07 -39.29 -0.36 2.40 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 2.10 6.30 -52.49 -0.33 1.77 16 33 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 34 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -31.11 319.88 -8.41 -39.51 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.02 Total: 2.33 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.68 Total: -21.96 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.70 Total: -34.16 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.20 Total: -7.07 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.11 -8.41 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037726486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.175 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds