Wall clock time and date at job start Mon Mar 30 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 6 6 C 1.50699 * 109.47482 * 174.99860 * 5 2 1 7 7 C 1.38294 * 119.97096 * 90.00077 * 6 5 2 8 8 C 1.38240 * 120.10956 * 180.02562 * 7 6 5 9 9 C 1.38162 * 120.05933 * 359.95149 * 8 7 6 10 10 C 1.38716 * 119.94373 * 0.02758 * 9 8 7 11 11 O 1.35897 * 120.05530 * 180.02562 * 10 9 8 12 12 C 1.42899 * 117.00215 * 359.97438 * 11 10 9 13 13 C 1.53000 * 109.47081 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46708 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00416 * 0.02562 * 14 13 12 16 16 C 1.37887 * 119.99872 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99805 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00171 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46947 * 59.99855 * 18 16 14 20 20 H 1.48494 * 109.47179 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46831 * 299.99929 * 18 16 14 22 22 C 1.38123 * 119.97296 * 269.72497 * 6 5 2 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 1.00896 * 111.00210 * 300.00180 * 4 2 1 27 27 H 1.00906 * 110.99720 * 63.95766 * 4 2 1 28 28 H 1.09001 * 109.47359 * 295.00205 * 5 2 1 29 29 H 1.09002 * 109.46906 * 55.00224 * 5 2 1 30 30 H 1.07997 * 119.94257 * 359.97438 * 7 6 5 31 31 H 1.08007 * 119.97065 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.03022 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47421 * 300.00198 * 12 11 10 34 34 H 1.08998 * 109.46927 * 60.00014 * 12 11 10 35 35 H 1.08993 * 109.47338 * 299.99577 * 13 12 11 36 36 H 1.08999 * 109.47369 * 60.00446 * 13 12 11 37 37 H 0.96998 * 119.99962 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.02850 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2491 6 6 3.5419 -0.6149 -1.3126 7 6 4.3289 -1.5823 -0.7148 8 6 5.7069 -1.4872 -0.7709 9 6 6.3014 -0.4256 -1.4254 10 6 5.5142 0.5458 -2.0262 11 8 6.0965 1.5907 -2.6711 12 6 7.5249 1.6262 -2.6910 13 6 7.9937 2.8658 -3.4556 14 6 9.5001 2.9029 -3.4770 15 1 10.0665 2.1204 -2.9941 16 6 10.1553 3.9353 -4.1142 17 7 9.4656 4.8874 -4.7036 18 14 12.0225 3.9809 -4.1414 19 1 12.5377 2.7605 -4.8127 20 1 12.4775 5.1840 -4.8834 21 1 12.5367 4.0347 -2.7493 22 6 4.1313 0.4456 -1.9727 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6961 -0.2349 2.0386 27 1 1.7502 -1.6648 1.1910 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2617 -2.1369 30 1 3.8662 -2.4128 -0.2027 31 1 6.3194 -2.2438 -0.3029 32 1 7.3780 -0.3521 -1.4693 33 1 7.9017 1.6662 -1.6689 34 1 7.9038 0.7305 -3.1831 35 1 7.6170 2.8263 -4.4776 36 1 7.6149 3.7614 -2.9630 37 1 9.9265 5.6139 -5.1516 38 1 3.5163 1.1983 -2.4436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037726487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:51:02 Heat of formation + Delta-G solvation = -39.696210 kcal Electronic energy + Delta-G solvation = -17332.396705 eV Core-core repulsion = 14559.965339 eV Total energy + Delta-G solvation = -2772.431366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72487 -37.78174 -36.11581 -33.33934 -31.66147 -30.68500 -29.10979 -29.04296 -26.56868 -24.89644 -22.35633 -21.77265 -20.98391 -19.97149 -17.55620 -16.39858 -16.16055 -15.52728 -15.34858 -15.21045 -14.82456 -14.49726 -14.21039 -13.57533 -13.35540 -12.87494 -12.71539 -12.51461 -12.27757 -12.07451 -11.86266 -11.34411 -11.17514 -11.15374 -11.03798 -10.76812 -10.67771 -10.34532 -9.77873 -9.61727 -9.27823 -8.87284 -8.49636 -8.41420 -7.68257 -6.07711 -4.12221 1.63101 1.86721 3.30625 3.34732 3.36756 3.92119 4.07290 4.33869 4.44199 4.68556 4.80978 5.06304 5.11650 5.21427 5.28497 5.29091 5.46868 5.50954 5.63596 5.66823 5.72995 5.82659 5.90389 6.04506 6.09950 6.17015 6.34166 6.65343 6.70765 6.84497 6.87344 6.98945 7.14645 7.25524 7.55216 7.68110 7.86026 8.14833 8.27698 8.93265 9.51805 11.03905 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.044697 B = 0.003555 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.286429 B = 7873.571640 C = 8246.695205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.084 0.916 4 N -0.837 5.837 5 C -0.072 4.072 6 C -0.036 4.036 7 C -0.145 4.145 8 C -0.083 4.083 9 C -0.217 4.217 10 C 0.143 3.857 11 O -0.318 6.318 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.163 4.163 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.339 0.661 27 H 0.336 0.664 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.877 -12.614 9.446 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.021 4.021 3 H 0.102 0.898 4 N -0.366 5.366 5 C -0.110 4.110 6 C -0.036 4.036 7 C -0.164 4.164 8 C -0.101 4.101 9 C -0.235 4.235 10 C 0.097 3.903 11 O -0.231 6.231 12 C -0.008 4.008 13 C -0.011 4.011 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.182 4.182 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.193 -12.075 8.958 21.374 hybrid contribution 0.237 -0.157 0.270 0.392 sum -14.955 -12.231 9.227 21.411 Atomic orbital electron populations 1.22668 0.97822 1.01833 1.02384 1.21436 0.91408 0.98945 0.90302 0.89785 1.58851 1.67513 1.06326 1.03941 1.20640 0.91983 1.00886 0.97465 1.19307 0.94589 0.93819 0.95865 1.20644 0.93119 1.00011 1.02583 1.20851 0.94797 0.96939 0.97488 1.21325 1.00336 0.97151 1.04735 1.19139 0.92443 0.87419 0.91329 1.86152 1.24718 1.42230 1.70047 1.23292 0.74914 1.02057 1.00542 1.19113 0.95673 0.90659 0.95701 1.20952 0.90642 1.09098 1.35801 0.92419 1.24993 0.98756 0.95359 0.95081 1.69970 1.35686 1.11907 1.35275 0.86544 0.85018 0.77523 0.78269 1.20091 1.21124 1.20090 1.20245 0.91897 1.00543 1.05517 0.92778 0.91903 0.92692 0.84867 0.85177 0.91199 0.90543 0.86807 0.86537 0.85574 0.93230 0.93243 0.95447 0.95439 0.92672 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 9.48 37.16 0.35 -0.92 16 2 C 0.09 0.80 3.35 -67.72 -0.23 0.57 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 N -0.84 -6.96 8.63 -4.67 -0.04 -7.01 16 5 C -0.07 -0.70 4.96 -27.89 -0.14 -0.84 16 6 C -0.04 -0.47 4.95 -104.64 -0.52 -0.99 16 7 C -0.15 -1.90 9.30 -39.56 -0.37 -2.26 16 8 C -0.08 -1.17 10.04 -39.61 -0.40 -1.57 16 9 C -0.22 -3.64 9.04 -39.43 -0.36 -4.00 16 10 C 0.14 2.65 6.69 -39.21 -0.26 2.39 16 11 O -0.32 -6.87 10.14 -19.42 -0.20 -7.07 16 12 C 0.07 1.48 4.68 37.16 0.17 1.65 16 13 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 14 C -0.53 -14.96 9.11 -34.43 -0.31 -15.28 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.73 5.46 -17.81 -0.10 1.63 16 17 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.16 -2.61 9.64 -39.43 -0.38 -2.99 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.34 2.38 9.04 -39.29 -0.36 2.02 16 27 H 0.34 2.30 8.98 -39.29 -0.35 1.94 16 28 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.13 2.09 6.30 -52.49 -0.33 1.76 16 33 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 34 H 0.05 1.05 7.66 -51.93 -0.40 0.66 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -30.99 319.85 -8.40 -39.40 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.02 Total: 1.50 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.68 Total: -22.06 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.70 Total: -33.09 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.20 Total: -7.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.99 -8.40 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037726487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.298 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds