Wall clock time and date at job start Mon Mar 30 2020 21:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47457 * 2 1 4 4 C 1.38260 * 119.94598 * 90.00121 * 3 2 1 5 5 C 1.38144 * 120.05870 * 180.02562 * 4 3 2 6 6 C 1.38733 * 119.94058 * 359.97438 * 5 4 3 7 7 O 1.35907 * 120.05587 * 180.02562 * 6 5 4 8 8 C 1.42898 * 116.99968 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46767 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46867 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47398 * 54.99853 * 10 9 8 12 12 O 1.42903 * 109.46726 * 294.99609 * 10 9 8 13 13 C 1.50699 * 109.47083 * 174.99799 * 10 9 8 14 14 H 1.08000 * 119.99792 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48491 * 109.47045 * 120.00577 * 17 15 13 20 20 H 1.48501 * 109.46950 * 240.00369 * 17 15 13 21 21 C 1.38727 * 119.89001 * 0.28316 * 6 5 4 22 22 C 1.38147 * 119.94568 * 359.46789 * 21 6 5 23 23 H 1.09006 * 109.47097 * 300.00117 * 1 2 3 24 24 H 1.08999 * 109.47542 * 59.99865 * 1 2 3 25 25 H 1.08994 * 109.47644 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47097 * 239.99883 * 2 1 3 27 27 H 1.08999 * 109.47542 * 120.00135 * 2 1 3 28 28 H 1.08002 * 119.97312 * 0.02562 * 4 3 2 29 29 H 1.07999 * 120.02951 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47012 * 60.00133 * 8 7 6 31 31 H 1.09001 * 109.47209 * 300.00049 * 8 7 6 32 32 H 1.08990 * 109.47398 * 60.00182 * 9 8 7 33 33 H 1.09001 * 109.47099 * 299.99875 * 9 8 7 34 34 H 0.96700 * 114.00234 * 300.00043 * 12 10 9 35 35 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.03103 * 179.72134 * 21 6 5 37 37 H 1.07994 * 119.97700 * 180.23670 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0715 1.1980 5 6 2.7225 3.3741 1.2007 6 6 2.9542 4.0291 -0.0001 7 8 3.4073 5.3104 -0.0001 8 6 3.6230 5.9222 -1.2734 9 6 4.1294 7.3520 -1.0729 10 6 4.3597 8.0073 -2.4362 11 1 3.4453 7.9488 -3.0266 12 8 5.4130 7.3256 -3.1203 13 6 4.7401 9.4523 -2.2411 14 1 4.8101 9.8625 -1.2444 15 6 4.9987 10.2508 -3.3350 16 7 4.9130 9.7515 -4.5486 17 14 5.4709 12.0419 -3.0930 18 1 5.4977 12.3552 -1.6417 19 1 6.8154 12.2824 -3.6758 20 1 4.4755 12.9119 -3.7694 21 6 2.7174 3.3758 -1.2008 22 6 2.2623 2.0715 -1.1982 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0824 1.5610 2.1326 29 1 2.9017 3.8820 2.1368 30 1 2.6860 5.9428 -1.8300 31 1 4.3641 5.3494 -1.8308 32 1 5.0663 7.3310 -0.5166 33 1 3.3885 7.9250 -0.5153 34 1 6.2587 7.3373 -2.6516 35 1 5.0946 10.3134 -5.3182 36 1 2.8926 3.8851 -2.1370 37 1 2.0814 1.5612 -2.1326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:55:50 Heat of formation + Delta-G solvation = -89.201874 kcal Electronic energy + Delta-G solvation = -17457.973446 eV Core-core repulsion = 14585.676691 eV Total energy + Delta-G solvation = -2872.296755 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99104 -37.80532 -35.99943 -33.63282 -32.17531 -31.25123 -30.77475 -28.54714 -26.62949 -23.97414 -23.46735 -22.20775 -20.73349 -20.26460 -17.93909 -16.98877 -15.80850 -15.74451 -15.53382 -14.64952 -14.53653 -14.20492 -13.99472 -13.83549 -13.49588 -13.33511 -13.01582 -12.52784 -12.51247 -12.06245 -11.54506 -11.27647 -11.17604 -11.05886 -11.02261 -10.90919 -10.75197 -10.42334 -10.11397 -10.01065 -9.10918 -8.94678 -8.62378 -8.25334 -7.91727 -6.05560 -4.23699 1.39908 1.49929 3.24953 3.33190 3.36661 3.55085 3.80899 4.36737 4.71869 4.76606 4.96842 5.06822 5.21887 5.22063 5.38341 5.39285 5.48695 5.55004 5.64435 5.68327 5.73746 5.85067 5.97655 6.02361 6.08784 6.18957 6.34691 6.45656 6.48184 6.56817 6.64612 6.89306 6.95023 7.63955 7.71001 7.80151 8.12271 8.79130 9.31086 9.53047 10.98988 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.057796 B = 0.003450 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.343638 B = 8113.279688 C = 8366.724700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.081 4.081 5 C -0.158 4.158 6 C 0.136 3.864 7 O -0.319 6.319 8 C 0.062 3.938 9 C -0.139 4.139 10 C 0.231 3.769 11 H 0.058 0.942 12 O -0.568 6.568 13 C -0.571 4.571 14 H 0.058 0.942 15 C 0.078 3.922 16 N -0.860 5.860 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.207 4.207 22 C -0.077 4.077 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.347 0.653 35 H 0.260 0.740 36 H 0.131 0.869 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -16.511 8.692 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.134 4.134 4 C -0.099 4.099 5 C -0.176 4.176 6 C 0.090 3.910 7 O -0.233 6.233 8 C -0.012 4.012 9 C -0.177 4.177 10 C 0.174 3.826 11 H 0.076 0.924 12 O -0.371 6.371 13 C -0.609 4.609 14 H 0.077 0.923 15 C -0.128 4.128 16 N -0.496 5.496 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.225 4.225 22 C -0.095 4.095 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.191 0.809 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.331 -16.439 8.204 19.433 hybrid contribution 0.636 1.197 0.223 1.374 sum -5.695 -15.242 8.427 18.324 Atomic orbital electron populations 1.21766 0.95118 1.01328 1.02242 1.20428 0.95868 0.92761 1.02422 1.19724 1.03781 0.96751 0.93121 1.20755 0.98001 0.93617 0.97508 1.20429 1.05618 0.95204 0.96395 1.19139 0.93362 0.84570 0.93916 1.86104 1.79654 1.23480 1.34029 1.23086 1.00308 0.95468 0.82363 1.22463 1.01114 0.91405 1.02726 1.19340 0.88333 0.89516 0.85411 0.92433 1.86545 1.20782 1.78108 1.51656 1.21659 1.50502 0.95633 0.93105 0.92336 1.25062 0.94252 0.98384 0.95141 1.70084 1.46216 1.35587 0.97702 0.86573 0.78229 0.84938 0.78404 1.19639 1.20842 1.20840 1.21386 1.06732 0.96690 0.97719 1.20806 0.97356 0.93820 0.97522 0.92638 0.92590 0.92713 0.91374 0.91402 0.85872 0.85443 0.92540 0.91625 0.91999 0.91426 0.80889 0.92971 0.85094 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.13 -1.52 5.14 -104.60 -0.54 -2.05 16 4 C -0.08 -0.93 9.69 -39.61 -0.38 -1.32 16 5 C -0.16 -2.15 9.99 -39.43 -0.39 -2.54 16 6 C 0.14 2.15 6.69 -39.22 -0.26 1.89 16 7 O -0.32 -5.67 10.14 -19.45 -0.20 -5.87 16 8 C 0.06 1.13 4.64 37.16 0.17 1.30 16 9 C -0.14 -2.86 5.20 -26.73 -0.14 -3.00 16 10 C 0.23 5.76 2.82 -27.88 -0.08 5.68 16 11 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 12 O -0.57 -14.24 12.27 -35.23 -0.43 -14.67 16 13 C -0.57 -15.56 8.76 -34.44 -0.30 -15.86 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 16 N -0.86 -25.23 12.84 55.43 0.71 -24.52 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.21 -3.01 9.04 -39.43 -0.36 -3.37 16 22 C -0.08 -0.96 9.69 -39.60 -0.38 -1.34 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.06 1.00 7.65 -51.93 -0.40 0.61 16 31 H 0.07 1.19 7.35 -51.93 -0.38 0.81 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.35 7.71 9.04 45.56 0.41 8.12 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.13 1.90 6.30 -52.48 -0.33 1.57 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -30.24 314.70 -7.64 -37.88 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.88 Total: 6.57 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -2.56 Total: -20.17 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.63 Total: -20.54 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.24 -7.64 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.317 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds