Wall clock time and date at job start Mon Mar 30 2020 21:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46921 * 2 1 4 4 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 5 5 C 1.50706 * 109.46897 * 179.17829 * 4 2 1 6 6 H 1.07999 * 120.00119 * 355.39862 * 5 4 2 7 7 C 1.37877 * 119.99836 * 175.11960 * 5 4 2 8 8 N 1.31515 * 120.00106 * 180.27625 * 7 5 4 9 9 Si 1.86802 * 120.00096 * 0.27836 * 7 5 4 10 10 H 1.48500 * 109.47343 * 89.99729 * 9 7 5 11 11 H 1.48497 * 109.47341 * 209.99799 * 9 7 5 12 12 H 1.48506 * 109.47282 * 329.99989 * 9 7 5 13 13 N 1.46901 * 109.47042 * 240.00354 * 2 1 3 14 14 C 1.48554 * 111.00174 * 78.63888 * 13 2 1 15 15 C 1.54382 * 104.59500 * 200.96284 * 14 13 2 16 16 C 1.54259 * 105.06144 * 23.84652 * 15 14 13 17 17 C 1.48558 * 111.00084 * 323.21763 * 13 2 1 18 18 H 1.09004 * 110.40917 * 40.26078 * 17 13 2 19 19 C 1.53005 * 110.41300 * 277.94032 * 17 13 2 20 20 C 1.54260 * 110.03055 * 303.07009 * 19 17 13 21 21 C 1.54965 * 104.15813 * 217.13814 * 20 19 17 22 22 C 1.54886 * 102.78207 * 37.88576 * 21 20 19 23 23 C 1.53874 * 110.03255 * 185.85017 * 19 17 13 24 24 H 1.09003 * 109.47213 * 187.96971 * 1 2 3 25 25 H 1.09004 * 109.47507 * 307.96454 * 1 2 3 26 26 H 1.09003 * 109.47545 * 67.96447 * 1 2 3 27 27 H 1.09000 * 109.46985 * 59.18539 * 4 2 1 28 28 H 1.09001 * 109.47230 * 299.18089 * 4 2 1 29 29 H 0.97003 * 119.99841 * 180.02562 * 8 7 5 30 30 H 1.09001 * 110.41303 * 319.73904 * 14 13 2 31 31 H 1.08999 * 110.41540 * 82.18029 * 14 13 2 32 32 H 1.09006 * 110.31829 * 264.95651 * 15 14 13 33 33 H 1.08999 * 110.41155 * 142.79704 * 15 14 13 34 34 H 1.08993 * 110.32485 * 241.10889 * 16 15 14 35 35 H 1.09003 * 110.31877 * 118.90066 * 16 15 14 36 36 H 1.08997 * 110.01571 * 64.45600 * 19 17 13 37 37 H 1.09001 * 110.48901 * 335.77983 * 20 19 17 38 38 H 1.08994 * 110.49322 * 98.42597 * 20 19 17 39 39 H 1.09005 * 110.71561 * 279.56911 * 21 20 19 40 40 H 1.09005 * 110.92562 * 156.29639 * 21 20 19 41 41 H 1.08992 * 110.48705 * 203.40940 * 22 21 20 42 42 H 1.09005 * 110.59915 * 80.81414 * 22 21 20 43 43 H 1.08999 * 110.03124 * 238.56754 * 23 19 17 44 44 H 1.09001 * 110.03117 * 359.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7389 1.2390 6 1 4.0858 -0.3481 0.3886 7 6 4.2377 -1.2486 2.3179 8 7 5.5527 -1.2591 2.3113 9 14 3.3056 -1.9246 3.7889 10 1 3.0456 -3.3727 3.5874 11 1 4.1158 -1.7336 5.0186 12 1 2.0143 -1.2048 3.9301 13 7 2.0196 -0.6924 -1.1995 14 6 1.9395 0.1886 -2.3928 15 6 1.9515 -0.7812 -3.5940 16 6 1.4321 -2.1209 -3.0326 17 6 1.1498 -1.8477 -1.5397 18 1 0.1010 -1.5903 -1.3919 19 6 1.5239 -3.0652 -0.6919 20 6 3.0136 -3.4115 -0.8930 21 6 3.0494 -4.9606 -0.8680 22 6 1.7488 -5.3455 -1.6159 23 6 0.7199 -4.2943 -1.1509 24 1 -0.3634 -1.0178 0.1425 25 1 -0.3634 0.6322 0.8102 26 1 -0.3634 0.3856 -0.9526 27 1 1.6648 -1.7446 1.2565 28 1 1.6887 -0.1990 2.1391 29 1 6.0387 -1.6181 3.0702 30 1 1.0143 0.7647 -2.3787 31 1 2.8020 0.8540 -2.4328 32 1 2.9658 -0.8985 -3.9756 33 1 1.2908 -0.4190 -4.3816 34 1 2.1913 -2.8956 -3.1388 35 1 0.5153 -2.4153 -3.5436 36 1 1.3267 -2.8618 0.3606 37 1 3.3659 -3.0375 -1.8543 38 1 3.6136 -3.0022 -0.0803 39 1 3.0293 -5.3303 0.1572 40 1 3.9249 -5.3383 -1.3961 41 1 1.4267 -6.3468 -1.3305 42 1 1.8946 -5.2854 -2.6945 43 1 0.1331 -4.6878 -0.3209 44 1 0.0629 -4.0232 -1.9774 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695833607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:54:34 Heat of formation + Delta-G solvation = -4.328849 kcal Electronic energy + Delta-G solvation = -20634.978706 eV Core-core repulsion = 17972.602600 eV Total energy + Delta-G solvation = -2662.376106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77218 -36.71279 -34.19298 -32.08280 -30.12050 -28.76371 -28.18741 -27.57425 -25.79631 -23.17891 -21.63858 -20.59049 -20.14289 -19.10995 -17.80530 -16.51088 -16.05734 -15.46522 -14.85749 -14.26743 -13.92228 -13.73008 -13.37533 -13.18076 -12.74714 -12.34465 -12.20666 -12.09591 -11.73649 -11.48811 -11.04853 -10.99705 -10.86626 -10.77070 -10.69120 -10.59972 -10.49648 -10.22441 -9.96973 -9.86728 -9.75799 -9.66134 -9.46885 -9.29770 -8.89439 -8.31307 -7.52174 -5.84973 -3.76611 3.38310 3.46356 3.48383 4.54891 4.59383 5.03239 5.09297 5.19254 5.25876 5.33832 5.40186 5.48720 5.60959 5.72471 5.78290 5.85360 5.89182 5.95345 5.98335 6.05752 6.07110 6.11399 6.19633 6.24231 6.31723 6.34254 6.36865 6.37673 6.49144 6.53272 6.58783 6.67059 6.72082 6.81685 6.88979 7.14162 7.25885 7.49476 7.52858 7.73918 7.89066 8.03537 8.80738 9.30661 9.78801 11.28854 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.010100 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.087532 B = 2771.725974 C = 3487.082964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.069 0.931 4 C -0.012 4.012 5 C -0.477 4.477 6 H 0.081 0.919 7 C 0.063 3.937 8 N -0.908 5.908 9 Si 0.863 3.137 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.269 1.269 13 N -0.468 5.468 14 C 0.029 3.971 15 C -0.122 4.122 16 C -0.122 4.122 17 C 0.065 3.935 18 H 0.051 0.949 19 C -0.080 4.080 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.122 4.122 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.023 0.977 28 H 0.014 0.986 29 H 0.258 0.742 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -3.294 -9.612 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.024 4.024 3 H 0.088 0.912 4 C -0.049 4.049 5 C -0.515 4.515 6 H 0.099 0.901 7 C -0.136 4.136 8 N -0.549 5.549 9 Si 0.692 3.308 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.194 1.194 13 N -0.191 5.191 14 C -0.100 4.100 15 C -0.160 4.160 16 C -0.160 4.160 17 C -0.044 4.044 18 H 0.069 0.931 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.168 4.168 22 C -0.158 4.158 23 C -0.160 4.160 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.518 -3.485 -9.372 13.805 hybrid contribution -1.337 -0.108 0.781 1.552 sum -10.855 -3.593 -8.591 14.302 Atomic orbital electron populations 1.22535 0.99700 1.01524 1.00470 1.21782 0.89957 0.98233 0.92451 0.91245 1.19870 0.98248 0.95408 0.91373 1.20996 0.88819 1.38350 1.03349 0.90076 1.24966 0.94546 0.96289 0.97825 1.69908 1.05992 1.47950 1.31077 0.87043 0.80427 0.79822 0.83538 1.20536 1.21834 1.19379 1.65571 1.47455 1.05159 1.00920 1.23086 0.99875 0.95847 0.91150 1.22249 1.01127 0.95588 0.97066 1.22426 1.00484 0.97809 0.95294 1.22789 0.95292 0.92619 0.93668 0.93082 1.21861 0.96091 0.91930 0.99998 1.22348 0.95788 0.92344 1.03671 1.22585 0.96316 0.98307 0.99621 1.22329 0.96206 0.97741 0.99557 1.22245 0.97770 0.96037 0.99944 0.92426 0.92828 0.93837 0.95963 0.96825 0.93234 0.94982 0.90644 0.91448 0.92501 0.90412 0.92711 0.89855 0.91826 0.88582 0.92227 0.92508 0.92882 0.92319 0.92740 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 7.76 37.16 0.29 -2.69 16 2 C 0.08 1.64 2.30 -67.71 -0.16 1.49 16 3 H 0.07 1.41 7.96 -51.93 -0.41 0.99 16 4 C -0.01 -0.27 3.40 -27.88 -0.09 -0.37 16 5 C -0.48 -13.00 8.10 -34.44 -0.28 -13.28 16 6 H 0.08 2.45 7.82 -52.49 -0.41 2.04 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -27.83 13.96 55.43 0.77 -27.06 16 9 Si 0.86 21.71 27.57 -169.99 -4.69 17.02 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.27 -6.53 6.41 56.52 0.36 -6.16 16 13 N -0.47 -8.63 4.01 -214.25 -0.86 -9.49 16 14 C 0.03 0.45 6.27 -2.18 -0.01 0.44 16 15 C -0.12 -1.67 7.00 -25.35 -0.18 -1.85 16 16 C -0.12 -1.72 5.13 -25.35 -0.13 -1.85 16 17 C 0.06 1.05 1.47 -66.07 -0.10 0.95 16 18 H 0.05 0.81 5.19 -51.93 -0.27 0.54 16 19 C -0.08 -1.38 2.47 -89.50 -0.22 -1.60 16 20 C -0.10 -1.96 5.59 -25.03 -0.14 -2.10 16 21 C -0.13 -2.11 6.91 -24.70 -0.17 -2.28 16 22 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 23 C -0.12 -1.74 6.03 -25.61 -0.15 -1.90 16 24 H 0.06 0.93 6.62 -51.93 -0.34 0.58 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.64 6.71 -51.93 -0.35 0.29 16 27 H 0.02 0.52 4.38 -51.93 -0.23 0.29 16 28 H 0.01 0.33 6.87 -51.93 -0.36 -0.03 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 30 H 0.03 0.47 6.76 -51.93 -0.35 0.12 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.14 5.93 -51.93 -0.31 0.83 16 35 H 0.05 0.68 7.99 -51.93 -0.41 0.26 16 36 H 0.08 1.65 4.99 -51.93 -0.26 1.39 16 37 H 0.06 1.19 5.93 -51.93 -0.31 0.88 16 38 H 0.10 2.25 6.89 -51.93 -0.36 1.90 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.74 6.98 -51.93 -0.36 0.38 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -28.79 313.48 -9.37 -38.16 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.71 Total: 1.80 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -1.61 Total: -25.17 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.09 Total: -36.54 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.69 Total: 17.02 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.79 -9.37 -38.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.834 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds