Wall clock time and date at job start Mon Mar 30 2020 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47192 * 2 1 4 4 H 1.08999 * 109.46537 * 305.51980 * 3 2 1 5 5 C 1.50699 * 109.47151 * 185.52367 * 3 2 1 6 6 H 1.08000 * 119.99878 * 244.54143 * 5 3 2 7 7 C 1.37880 * 120.00478 * 64.53462 * 5 3 2 8 8 N 1.31510 * 120.00683 * 196.35619 * 7 5 3 9 9 Si 1.86803 * 119.99503 * 16.35518 * 7 5 3 10 10 H 1.48507 * 109.47025 * 91.30120 * 9 7 5 11 11 H 1.48494 * 109.47048 * 211.29756 * 9 7 5 12 12 H 1.48496 * 109.47261 * 331.29935 * 9 7 5 13 13 N 1.46896 * 109.46955 * 65.52204 * 3 2 1 14 14 C 1.46901 * 110.99359 * 203.24440 * 13 3 2 15 15 H 1.08995 * 108.92667 * 327.91687 * 14 13 3 16 16 C 1.45876 * 108.94384 * 86.63474 * 14 13 3 17 17 C 1.54303 * 112.19279 * 181.81295 * 16 14 13 18 18 C 1.50446 * 108.50179 * 281.46274 * 17 16 14 19 19 N 1.47997 * 112.82644 * 93.72064 * 18 17 16 20 20 C 1.46900 * 110.99805 * 191.34549 * 19 18 17 21 21 C 1.52999 * 109.47188 * 293.95484 * 20 19 18 22 22 C 1.47998 * 114.63178 * 318.09850 * 19 18 17 23 23 C 1.50441 * 112.82823 * 318.08475 * 22 19 18 24 24 H 1.08997 * 109.46813 * 174.92515 * 1 2 3 25 25 H 1.08995 * 109.47032 * 294.92968 * 1 2 3 26 26 H 1.09003 * 109.47014 * 54.92838 * 1 2 3 27 27 H 1.09003 * 109.47245 * 119.99950 * 2 1 3 28 28 H 1.09005 * 109.47396 * 239.99915 * 2 1 3 29 29 H 0.96998 * 120.00441 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99988 * 79.29178 * 13 3 2 31 31 H 1.09009 * 108.93397 * 302.51291 * 16 14 13 32 32 H 1.09005 * 108.93883 * 61.11111 * 16 14 13 33 33 H 1.09004 * 109.62987 * 41.16425 * 17 16 14 34 34 H 1.08999 * 109.63454 * 161.75736 * 17 16 14 35 35 H 1.09001 * 108.81328 * 214.59409 * 18 17 16 36 36 H 1.09008 * 108.80751 * 332.97395 * 18 17 16 37 37 H 1.08995 * 109.46749 * 53.96136 * 20 19 18 38 38 H 1.09001 * 109.46804 * 173.95685 * 20 19 18 39 39 H 1.09003 * 109.47526 * 300.00102 * 21 20 19 40 40 H 1.09001 * 109.47084 * 60.00372 * 21 20 19 41 41 H 1.09002 * 109.47018 * 179.97438 * 21 20 19 42 42 H 1.08994 * 108.81211 * 78.95557 * 22 19 18 43 43 H 1.09007 * 108.81045 * 197.33463 * 22 19 18 44 44 H 1.09002 * 109.63484 * 334.02964 * 23 22 19 45 45 H 1.09003 * 109.63202 * 213.43623 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 -0.8365 5 6 3.5408 1.4447 -0.1368 6 1 4.1558 1.8202 0.6677 7 6 4.1288 0.9672 -1.2888 8 7 5.4090 0.6660 -1.2977 9 14 3.1071 0.7481 -2.8372 10 1 3.1676 1.9895 -3.6500 11 1 3.6444 -0.3881 -3.6282 12 1 1.6971 0.4687 -2.4645 13 7 1.6622 2.0954 1.2605 14 6 1.6225 3.5557 1.1055 15 1 2.3724 3.8540 0.3729 16 6 0.3036 3.9446 0.6184 17 6 0.1936 5.4660 0.3856 18 6 -0.0084 6.1391 1.7158 19 7 1.2601 6.5944 2.3273 20 6 1.0559 6.9969 3.7253 21 6 0.1625 8.2381 3.7733 22 6 2.3808 5.6349 2.2099 23 6 1.9600 4.2124 2.4606 24 1 -0.3633 -1.0236 -0.0909 25 1 -0.3633 0.4331 0.9319 26 1 -0.3633 0.5905 -0.8411 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 5.8227 0.3304 -2.1082 30 1 2.2856 1.8278 2.0073 31 1 0.1070 3.4278 -0.3210 32 1 -0.4466 3.6434 1.3496 33 1 1.1106 5.8332 -0.0752 34 1 -0.6559 5.6766 -0.2641 35 1 -0.6615 7.0008 1.5781 36 1 -0.4921 5.4371 2.3951 37 1 0.5778 6.1837 4.2713 38 1 2.0190 7.2245 4.1822 39 1 0.6406 9.0513 3.2272 40 1 -0.8006 8.0105 3.3164 41 1 0.0106 8.5365 4.8106 42 1 2.8004 5.7057 1.2065 43 1 3.1514 5.9043 2.9323 44 1 1.0799 4.1988 3.1035 45 1 2.7747 3.6683 2.9385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083422607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:59:53 Heat of formation + Delta-G solvation = -6.798206 kcal Electronic energy + Delta-G solvation = -20376.415585 eV Core-core repulsion = 17621.195010 eV Total energy + Delta-G solvation = -2755.220575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42152 -36.62791 -34.30098 -32.29225 -31.91399 -31.05745 -29.03398 -26.62152 -25.77050 -23.87295 -22.38455 -22.28227 -19.95837 -19.58584 -19.16563 -16.96947 -16.18278 -15.67069 -14.87357 -14.73744 -14.53753 -13.85504 -13.59572 -13.37765 -13.03137 -12.82669 -12.67936 -12.50443 -12.12174 -11.93705 -11.87898 -11.67695 -11.47695 -11.21392 -10.95910 -10.91568 -10.77622 -10.66819 -10.39225 -10.33948 -10.13261 -9.81159 -9.71783 -9.52999 -9.17636 -8.45023 -8.08311 -7.29665 -6.15137 -4.10164 3.26529 3.36377 3.40346 3.92956 4.39915 4.86182 4.93211 5.01240 5.16622 5.20973 5.24466 5.36850 5.41877 5.54781 5.56478 5.68668 5.75827 5.86379 5.90885 6.01493 6.05157 6.09775 6.11340 6.14862 6.17307 6.22367 6.28484 6.37801 6.50608 6.57390 6.70680 6.77053 6.81187 6.85628 7.08145 7.22591 7.23574 7.28259 7.38440 7.62944 8.10166 8.41924 8.52894 8.92327 9.52967 10.97949 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.005642 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.913898 B = 4961.940647 C = 5238.357207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.188 3.812 4 H 0.027 0.973 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.862 3.138 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.682 5.682 14 C 0.094 3.906 15 H 0.050 0.950 16 C -0.104 4.104 17 C -0.123 4.123 18 C 0.067 3.933 19 N -0.551 5.551 20 C 0.054 3.946 21 C -0.148 4.148 22 C 0.061 3.939 23 C -0.145 4.145 24 H 0.030 0.970 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.263 0.737 30 H 0.333 0.667 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 10.182 7.047 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.079 3.921 4 H 0.045 0.955 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.311 5.311 14 C -0.016 4.016 15 H 0.068 0.932 16 C -0.143 4.143 17 C -0.161 4.161 18 C -0.060 4.060 19 N -0.276 5.276 20 C -0.074 4.074 21 C -0.205 4.205 22 C -0.066 4.066 23 C -0.184 4.184 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.085 10.401 6.575 16.562 hybrid contribution 0.469 -0.760 -0.574 1.061 sum -10.617 9.641 6.001 15.546 Atomic orbital electron populations 1.21719 0.98045 0.98866 1.01132 1.21795 0.93242 0.99167 1.00517 1.19519 0.93986 0.90666 0.87969 0.95491 1.21689 0.90686 1.43170 1.03320 0.91243 1.24939 0.94666 0.93887 0.98910 1.70005 1.11799 1.42756 1.28198 0.87207 0.82350 0.77837 0.83765 1.20726 1.21427 1.17416 1.60932 1.56456 1.05108 1.08616 1.20323 0.96589 0.89517 0.95217 0.93152 1.20573 0.98195 0.93979 1.01511 1.21430 1.02550 0.95744 0.96417 1.21773 0.90503 0.98116 0.95628 1.61936 1.06883 1.42522 1.16301 1.22052 0.99775 0.96599 0.89017 1.21793 0.99651 0.98053 1.01031 1.21879 0.92424 0.89599 1.02745 1.22080 1.01327 0.96795 0.98188 0.95121 0.92448 0.94371 0.93032 0.93190 0.92746 0.85032 0.92155 0.92316 0.90801 0.91505 0.91657 0.94879 0.95197 0.91154 0.92036 0.92840 0.92742 0.90475 0.91746 0.92107 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.75 37.16 0.36 -2.25 16 2 C -0.11 -2.37 4.90 -26.73 -0.13 -2.50 16 3 C 0.19 4.30 1.28 -68.87 -0.09 4.21 16 4 H 0.03 0.65 5.70 -51.93 -0.30 0.35 16 5 C -0.55 -14.92 8.62 -34.44 -0.30 -15.22 16 6 H 0.07 2.05 7.98 -52.49 -0.42 1.63 16 7 C 0.08 2.24 5.31 -17.82 -0.09 2.15 16 8 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.86 21.12 25.80 -169.99 -4.39 16.74 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.25 -5.81 5.55 56.52 0.31 -5.49 16 13 N -0.68 -13.39 5.57 -103.80 -0.58 -13.97 16 14 C 0.09 1.64 1.88 -70.39 -0.13 1.51 16 15 H 0.05 1.04 6.87 -51.93 -0.36 0.68 16 16 C -0.10 -1.65 4.76 -29.42 -0.14 -1.79 16 17 C -0.12 -1.66 5.63 -27.32 -0.15 -1.81 16 18 C 0.07 0.83 4.47 -4.49 -0.02 0.81 16 19 N -0.55 -7.02 4.68 -235.91 -1.10 -8.12 16 20 C 0.05 0.59 5.60 -3.82 -0.02 0.56 16 21 C -0.15 -1.37 9.84 37.16 0.37 -1.00 16 22 C 0.06 0.85 5.16 -4.50 -0.02 0.83 16 23 C -0.14 -2.16 5.05 -27.32 -0.14 -2.30 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.03 7.91 -51.93 -0.41 0.61 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.15 5.04 -51.93 -0.26 0.89 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.33 6.66 7.70 -39.29 -0.30 6.36 16 31 H 0.06 1.05 7.25 -51.92 -0.38 0.67 16 32 H 0.06 0.91 7.52 -51.93 -0.39 0.52 16 33 H 0.07 1.08 7.08 -51.93 -0.37 0.71 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.74 6.99 -51.93 -0.36 0.37 16 36 H 0.03 0.43 6.36 -51.92 -0.33 0.10 16 37 H 0.03 0.34 7.82 -51.93 -0.41 -0.07 16 38 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.49 6.79 -51.93 -0.35 0.14 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 1.19 6.58 -51.93 -0.34 0.84 16 43 H 0.06 0.83 7.56 -51.92 -0.39 0.44 16 44 H 0.06 0.89 6.83 -51.93 -0.35 0.54 16 45 H 0.07 1.06 7.66 -51.93 -0.40 0.66 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -28.28 326.47 -9.16 -37.44 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.28 Total: 5.87 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -0.51 Total: -16.81 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.91 Total: -48.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.39 Total: 16.74 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.28 -9.16 -37.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083422607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.644 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds