Wall clock time and date at job start Mon Mar 30 2020 21:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00064 * 2 1 4 4 C 1.52999 * 109.46760 * 293.95048 * 3 2 1 5 5 C 1.53001 * 109.46889 * 180.02562 * 4 3 2 6 6 C 1.50709 * 109.47077 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99913 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00065 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00017 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47444 * 89.99726 * 10 8 6 12 12 H 1.48501 * 109.46873 * 210.00095 * 10 8 6 13 13 H 1.48500 * 109.46923 * 329.99934 * 10 8 6 14 14 C 1.46908 * 110.99773 * 123.95182 * 2 1 3 15 15 H 1.08998 * 109.46935 * 292.42855 * 14 2 1 16 16 C 1.52999 * 109.46938 * 52.42823 * 14 2 1 17 17 C 1.53003 * 109.46891 * 179.97438 * 16 14 2 18 18 C 1.53001 * 109.46953 * 300.00144 * 17 16 14 19 19 C 1.52994 * 109.47112 * 60.00184 * 18 17 16 20 20 C 1.53001 * 109.47289 * 299.99452 * 19 18 17 21 21 H 1.08995 * 109.47458 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47311 * 300.00520 * 20 19 18 23 23 N 1.46906 * 109.46873 * 295.05658 * 22 20 19 24 24 H 1.09005 * 109.46784 * 53.15446 * 1 2 3 25 25 H 1.09003 * 109.46830 * 173.15083 * 1 2 3 26 26 H 1.08998 * 109.46958 * 293.15366 * 1 2 3 27 27 H 1.09000 * 109.47118 * 173.95383 * 3 2 1 28 28 H 1.08997 * 109.47129 * 53.95267 * 3 2 1 29 29 H 1.09001 * 109.47381 * 59.99870 * 4 3 2 30 30 H 1.08997 * 109.47478 * 300.00005 * 4 3 2 31 31 H 1.09000 * 109.47293 * 60.00149 * 5 4 3 32 32 H 1.09000 * 109.47247 * 299.99812 * 5 4 3 33 33 H 0.96998 * 120.00256 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47527 * 299.99984 * 16 14 2 35 35 H 1.08998 * 109.47281 * 60.00244 * 16 14 2 36 36 H 1.08995 * 109.47230 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46958 * 60.00047 * 17 16 14 38 38 H 1.08998 * 109.47209 * 299.99749 * 18 17 16 39 39 H 1.09002 * 109.47067 * 179.97438 * 18 17 16 40 40 H 1.09007 * 109.47286 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47439 * 59.99705 * 19 18 17 42 42 H 1.08998 * 109.47513 * 55.05523 * 22 20 19 43 43 H 1.08998 * 109.47369 * 175.05887 * 22 20 19 44 44 H 1.00905 * 110.99612 * 56.04885 * 23 22 20 45 45 H 1.00899 * 110.99500 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 6 2.1804 3.4855 -1.3186 6 6 1.8225 4.1610 -2.6174 7 1 1.2601 3.6250 -3.3678 8 6 2.2129 5.4631 -2.8477 9 7 2.8980 6.1155 -1.9342 10 14 1.7686 6.3005 -4.4573 11 1 0.4564 6.9811 -4.3156 12 1 2.8111 7.3015 -4.7986 13 1 1.6852 5.2847 -5.5373 14 6 1.9955 -0.7660 1.1377 15 1 1.7596 -0.2459 2.0661 16 6 1.3570 -2.1563 1.1555 17 6 1.9058 -2.9543 2.3400 18 6 3.4234 -3.0916 2.2032 19 6 4.0618 -1.7013 2.1853 20 6 3.5131 -0.9033 1.0008 21 1 3.9682 0.0870 0.9878 22 6 3.8436 -1.6331 -0.3027 23 7 5.3001 -1.6609 -0.4925 24 1 -0.3633 0.6163 -0.8224 25 1 -0.3633 -1.0204 -0.1226 26 1 -0.3633 0.4041 0.9449 27 1 3.0798 1.3444 0.1082 28 1 1.5612 1.9273 0.8309 29 1 0.5473 2.0843 -1.4267 30 1 2.0659 1.5014 -2.1492 31 1 3.2647 3.4581 -1.2106 32 1 1.7464 4.0417 -0.4877 33 1 3.1730 7.0314 -2.0964 34 1 0.2758 -2.0585 1.2526 35 1 1.5929 -2.6764 0.2271 36 1 1.4513 -3.9449 2.3525 37 1 1.6703 -2.4344 3.2686 38 1 3.6589 -3.6115 1.2745 39 1 3.8144 -3.6597 3.0473 40 1 5.1431 -1.7992 2.0883 41 1 3.8263 -1.1814 3.1139 42 1 3.4640 -2.6537 -0.2541 43 1 3.3781 -1.1117 -1.1391 44 1 5.7601 -2.0820 0.3007 45 1 5.5442 -2.1383 -1.3472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249965708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:57:46 Heat of formation + Delta-G solvation = -24.076965 kcal Electronic energy + Delta-G solvation = -19942.637169 eV Core-core repulsion = 17186.667331 eV Total energy + Delta-G solvation = -2755.969838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.94155 -36.45712 -34.10494 -33.48296 -31.45649 -30.35930 -29.37687 -27.01255 -25.16245 -24.51963 -22.71617 -21.82608 -20.79418 -19.75206 -18.41316 -16.43214 -16.19393 -16.02279 -15.16151 -14.81889 -14.52529 -14.21055 -14.06427 -13.76496 -13.49773 -13.17441 -12.89007 -12.52818 -12.26605 -12.06177 -11.87761 -11.55046 -11.35882 -11.22557 -11.10223 -10.99093 -10.76659 -10.52781 -10.43223 -10.38981 -10.20588 -9.86647 -9.48003 -9.23110 -8.97329 -8.50024 -8.27427 -7.95208 -5.92854 -3.94550 3.36515 3.42451 3.46483 4.12638 4.52471 4.53030 4.63255 4.77639 4.88190 5.09960 5.18446 5.32725 5.37602 5.38946 5.42872 5.48716 5.52834 5.56597 5.71113 5.76854 5.85400 5.89419 5.94109 5.99305 6.00480 6.07889 6.17588 6.24831 6.26484 6.37435 6.46042 6.51517 6.80301 6.90287 7.21899 7.24825 7.46519 7.50536 7.52251 7.76809 7.93021 8.08380 8.51816 9.12731 9.69001 11.18683 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.004267 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.973344 B = 6560.739699 C = 6952.139607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.053 3.947 4 C -0.103 4.103 5 C 0.022 3.978 6 C -0.516 4.516 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.091 3.909 15 H 0.037 0.963 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.079 4.079 21 H 0.082 0.918 22 C 0.071 3.929 23 N -0.852 5.852 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.089 0.911 44 H 0.332 0.668 45 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 -19.769 8.778 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.074 4.074 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.018 4.018 15 H 0.055 0.945 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.098 4.098 21 H 0.101 0.899 22 C -0.059 4.059 23 N -0.381 5.381 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.107 0.893 44 H 0.144 0.856 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.074 -19.026 8.354 20.779 hybrid contribution -0.623 0.005 0.008 0.623 sum -0.697 -19.021 8.362 20.789 Atomic orbital electron populations 1.22453 0.88202 1.01528 1.00599 1.62107 1.07268 1.14988 1.41606 1.22358 1.00046 0.86148 0.98878 1.21633 0.99800 0.98137 0.94486 1.19070 0.96292 0.89389 0.96825 1.21258 1.34595 0.97552 1.02067 0.92753 1.25021 0.95275 0.97530 0.96671 1.69969 1.38423 1.11225 1.34019 0.86615 0.78016 0.79345 0.84153 1.20773 1.21262 1.19869 1.21583 0.94286 0.93822 0.92144 0.94536 1.21704 0.99633 0.95308 0.98822 1.21510 0.95638 0.99775 0.98557 1.21591 0.95604 0.97252 1.01428 1.21587 0.99804 0.95611 0.98499 1.21166 0.94255 1.00193 0.94223 0.89938 1.21845 0.87311 0.97971 0.98737 1.58749 1.09037 1.63151 1.07181 0.90687 0.91884 0.96271 0.90724 0.95689 0.93616 0.92710 0.96561 0.96975 0.93104 0.91931 0.91010 0.92176 0.92211 0.92001 0.92398 0.91715 0.92052 0.95730 0.89291 0.85575 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.75 60.07 0.53 0.81 16 2 N -0.54 -8.06 3.78 -234.88 -0.89 -8.94 16 3 C 0.05 0.96 4.81 -3.82 -0.02 0.94 16 4 C -0.10 -2.21 5.09 -26.73 -0.14 -2.34 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 6 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 7 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 10 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.09 1.16 1.64 -67.71 -0.11 1.05 16 15 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 16 C -0.12 -1.24 4.44 -26.73 -0.12 -1.35 16 17 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 18 C -0.12 -1.05 5.65 -26.73 -0.15 -1.20 16 19 C -0.12 -1.17 5.22 -26.73 -0.14 -1.31 16 20 C -0.08 -0.98 2.15 -90.62 -0.19 -1.18 16 21 H 0.08 1.23 6.29 -51.93 -0.33 0.91 16 22 C 0.07 0.88 5.45 -3.82 -0.02 0.86 16 23 N -0.85 -9.76 9.62 -10.37 -0.10 -9.85 16 24 H 0.07 1.12 6.19 -51.93 -0.32 0.80 16 25 H 0.06 0.75 6.38 -51.93 -0.33 0.42 16 26 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 1.40 5.97 -51.93 -0.31 1.09 16 28 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.05 0.96 6.42 -51.93 -0.33 0.63 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 34 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 35 H 0.07 0.79 6.54 -51.93 -0.34 0.45 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.61 6.68 -51.92 -0.35 0.26 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.28 4.83 -51.93 -0.25 0.03 16 43 H 0.09 1.34 7.45 -51.93 -0.39 0.95 16 44 H 0.33 3.23 7.24 -39.29 -0.28 2.94 16 45 H 0.34 3.38 9.08 -39.29 -0.36 3.02 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -30.50 329.43 -9.40 -39.90 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.02 Total: 2.02 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.07 Total: -18.33 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.25 Total: -45.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.50 -9.40 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249965708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.820 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds