Wall clock time and date at job start Mon Mar 30 2020 21:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00064 * 2 1 4 4 C 1.52999 * 109.46760 * 293.95048 * 3 2 1 5 5 C 1.53001 * 109.46889 * 180.02562 * 4 3 2 6 6 C 1.50709 * 109.47077 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99913 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00065 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00017 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47444 * 89.99726 * 10 8 6 12 12 H 1.48501 * 109.46873 * 210.00095 * 10 8 6 13 13 H 1.48500 * 109.46923 * 329.99934 * 10 8 6 14 14 C 1.46908 * 110.99773 * 123.95182 * 2 1 3 15 15 H 1.08998 * 109.46935 * 292.42855 * 14 2 1 16 16 C 1.52999 * 109.46938 * 52.42823 * 14 2 1 17 17 C 1.53003 * 109.46891 * 179.97438 * 16 14 2 18 18 C 1.53001 * 109.46953 * 300.00144 * 17 16 14 19 19 C 1.52994 * 109.47112 * 60.00184 * 18 17 16 20 20 C 1.53001 * 109.47289 * 299.99452 * 19 18 17 21 21 H 1.08995 * 109.47458 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47311 * 300.00520 * 20 19 18 23 23 N 1.46906 * 109.46873 * 295.05658 * 22 20 19 24 24 H 1.09005 * 109.46784 * 53.15446 * 1 2 3 25 25 H 1.09003 * 109.46830 * 173.15083 * 1 2 3 26 26 H 1.08998 * 109.46958 * 293.15366 * 1 2 3 27 27 H 1.09000 * 109.47118 * 173.95383 * 3 2 1 28 28 H 1.08997 * 109.47129 * 53.95267 * 3 2 1 29 29 H 1.09001 * 109.47381 * 59.99870 * 4 3 2 30 30 H 1.08997 * 109.47478 * 300.00005 * 4 3 2 31 31 H 1.09000 * 109.47293 * 60.00149 * 5 4 3 32 32 H 1.09000 * 109.47247 * 299.99812 * 5 4 3 33 33 H 0.96998 * 120.00256 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47527 * 299.99984 * 16 14 2 35 35 H 1.08998 * 109.47281 * 60.00244 * 16 14 2 36 36 H 1.08995 * 109.47230 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46958 * 60.00047 * 17 16 14 38 38 H 1.08998 * 109.47209 * 299.99749 * 18 17 16 39 39 H 1.09002 * 109.47067 * 179.97438 * 18 17 16 40 40 H 1.09007 * 109.47286 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47439 * 59.99705 * 19 18 17 42 42 H 1.08998 * 109.47513 * 55.05523 * 22 20 19 43 43 H 1.08998 * 109.47369 * 175.05887 * 22 20 19 44 44 H 1.00905 * 110.99612 * 56.04885 * 23 22 20 45 45 H 1.00899 * 110.99500 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 6 2.1804 3.4855 -1.3186 6 6 1.8225 4.1610 -2.6174 7 1 1.2601 3.6250 -3.3678 8 6 2.2129 5.4631 -2.8477 9 7 2.8980 6.1155 -1.9342 10 14 1.7686 6.3005 -4.4573 11 1 0.4564 6.9811 -4.3156 12 1 2.8111 7.3015 -4.7986 13 1 1.6852 5.2847 -5.5373 14 6 1.9955 -0.7660 1.1377 15 1 1.7596 -0.2459 2.0661 16 6 1.3570 -2.1563 1.1555 17 6 1.9058 -2.9543 2.3400 18 6 3.4234 -3.0916 2.2032 19 6 4.0618 -1.7013 2.1853 20 6 3.5131 -0.9033 1.0008 21 1 3.9682 0.0870 0.9878 22 6 3.8436 -1.6331 -0.3027 23 7 5.3001 -1.6609 -0.4925 24 1 -0.3633 0.6163 -0.8224 25 1 -0.3633 -1.0204 -0.1226 26 1 -0.3633 0.4041 0.9449 27 1 3.0798 1.3444 0.1082 28 1 1.5612 1.9273 0.8309 29 1 0.5473 2.0843 -1.4267 30 1 2.0659 1.5014 -2.1492 31 1 3.2647 3.4581 -1.2106 32 1 1.7464 4.0417 -0.4877 33 1 3.1730 7.0314 -2.0964 34 1 0.2758 -2.0585 1.2526 35 1 1.5929 -2.6764 0.2271 36 1 1.4513 -3.9449 2.3525 37 1 1.6703 -2.4344 3.2686 38 1 3.6589 -3.6115 1.2745 39 1 3.8144 -3.6597 3.0473 40 1 5.1431 -1.7992 2.0883 41 1 3.8263 -1.1814 3.1139 42 1 3.4640 -2.6537 -0.2541 43 1 3.3781 -1.1117 -1.1391 44 1 5.7601 -2.0820 0.3007 45 1 5.5442 -2.1383 -1.3472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249965708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:57:45 Heat of formation + Delta-G solvation = -44.080551 kcal Electronic energy + Delta-G solvation = -19943.504590 eV Core-core repulsion = 17186.667331 eV Total energy + Delta-G solvation = -2756.837259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94200 -37.72786 -35.60881 -34.90042 -33.29928 -31.27143 -30.51515 -28.66233 -26.64951 -25.56672 -24.25796 -22.79849 -22.07449 -21.36901 -19.35270 -18.46030 -17.45741 -17.05852 -16.52066 -16.23533 -15.78691 -15.67983 -15.37397 -14.67379 -14.51003 -14.29351 -14.24425 -13.96204 -13.70126 -13.44338 -13.12604 -12.94962 -12.75418 -12.68800 -12.41150 -12.26274 -12.17928 -12.08555 -11.84803 -11.44360 -11.42954 -11.28979 -11.13918 -10.96099 -10.73338 -10.54826 -9.41451 -9.20389 -8.19621 -6.31059 1.39498 1.41605 1.52968 2.41209 2.95499 3.13231 3.60661 3.78703 3.92257 4.02241 4.16847 4.24151 4.27477 4.35184 4.44099 4.45941 4.53254 4.57260 4.61413 4.72744 4.75104 4.76259 4.92277 4.94907 5.00360 5.06274 5.09136 5.15755 5.20419 5.23723 5.27211 5.35572 5.43009 5.45291 5.51746 5.59671 5.74481 5.85788 6.12764 6.26047 6.29083 6.37529 6.71143 6.85498 7.38139 8.92576 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.004267 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.973344 B = 6560.739699 C = 6952.139607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.068 3.932 4 C -0.086 4.086 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.090 3.910 15 H 0.028 0.972 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.078 4.078 21 H 0.049 0.951 22 C 0.080 3.920 23 N -0.863 5.863 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.016 0.984 29 H 0.051 0.949 30 H 0.049 0.951 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.343 0.657 45 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 -21.642 8.559 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.060 4.060 4 C -0.124 4.124 5 C -0.011 4.011 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.187 1.187 14 C -0.018 4.018 15 H 0.046 0.954 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.098 4.098 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.395 5.395 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.157 0.843 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.761 -20.926 8.141 22.467 hybrid contribution -0.380 0.591 0.114 0.712 sum -1.141 -20.334 8.256 21.976 Atomic orbital electron populations 1.22502 0.87196 1.02911 1.00181 1.62067 1.08186 1.12767 1.43128 1.22010 0.99519 0.87966 0.96502 1.21365 0.99640 0.95147 0.96204 1.18958 0.94457 0.92277 0.95374 1.21675 1.35005 0.98362 1.02959 0.92281 1.26008 0.94866 0.98262 1.00744 1.70107 1.39307 1.11745 1.36332 0.85423 0.78070 0.78214 0.79200 1.19621 1.20617 1.18731 1.21680 0.94698 0.94813 0.90636 0.95374 1.21670 0.99835 0.93615 0.99726 1.21510 0.95767 1.00343 0.97562 1.21570 0.95353 0.96129 1.02332 1.21557 1.00249 0.96249 0.97027 1.21120 0.93962 0.98998 0.95673 0.93260 1.21664 0.87739 0.98298 0.97299 1.58687 1.08687 1.63909 1.08239 0.92045 0.89292 0.95991 0.91760 0.96549 0.93043 0.93245 0.99369 0.99402 0.92765 0.91347 0.91114 0.90342 0.92151 0.91736 0.90655 0.91075 0.92225 0.94008 0.92389 0.84286 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.75 127.69 1.12 1.65 16 2 N -0.54 -16.16 3.78 -897.01 -3.39 -19.55 16 3 C 0.07 2.56 4.81 86.30 0.42 2.97 16 4 C -0.09 -3.81 5.09 30.59 0.16 -3.65 16 5 C 0.03 1.51 4.97 29.85 0.15 1.66 16 6 C -0.54 -32.28 9.11 25.60 0.23 -32.05 16 7 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 10 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 14 C 0.09 2.25 1.64 44.91 0.07 2.32 16 15 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 16 C -0.11 -2.09 4.44 30.60 0.14 -1.95 16 17 C -0.11 -1.68 5.92 30.60 0.18 -1.50 16 18 C -0.12 -1.68 5.65 30.59 0.17 -1.51 16 19 C -0.11 -2.09 5.22 30.59 0.16 -1.93 16 20 C -0.08 -1.93 2.15 -10.79 -0.02 -1.95 16 21 H 0.05 1.54 6.29 -2.39 -0.02 1.52 16 22 C 0.08 1.93 5.45 86.30 0.47 2.41 16 23 N -0.86 -19.25 9.62 -186.72 -1.80 -21.05 16 24 H 0.06 1.81 6.19 -2.38 -0.01 1.79 16 25 H 0.09 1.92 6.38 -2.39 -0.02 1.91 16 26 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 2.55 5.97 -2.39 -0.01 2.54 16 28 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.05 2.21 6.42 -2.39 -0.02 2.20 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.07 1.22 6.38 -2.39 -0.02 1.21 16 35 H 0.07 1.38 6.54 -2.39 -0.02 1.36 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.92 6.32 -2.39 -0.02 0.91 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 1.23 6.68 -2.38 -0.02 1.21 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.04 0.86 4.83 -2.39 -0.01 0.85 16 43 H 0.06 1.77 7.45 -2.39 -0.02 1.75 16 44 H 0.34 6.24 7.24 -89.69 -0.65 5.59 16 45 H 0.35 6.65 9.08 -89.69 -0.81 5.83 16 Total: -1.00 -66.76 329.43 0.33 -66.43 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.50 Total: 18.25 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 3.70 Total: -33.16 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -4.90 Total: -99.12 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -66.76 0.33 -66.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249965708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.350 kcal (2) G-P(sol) polarization free energy of solvation -66.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds