Wall clock time and date at job start Mon Mar 30 2020 22:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86811 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47137 * 240.00172 * 3 2 1 5 5 H 1.48502 * 109.46605 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47092 * 119.99871 * 3 2 1 7 7 C 1.39892 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99973 * 194.18046 * 7 2 1 9 9 C 1.41178 * 119.99373 * 14.17399 * 7 2 1 10 10 C 1.40860 * 120.17322 * 207.41792 * 9 7 2 11 11 C 1.36403 * 119.81553 * 179.72728 * 10 9 7 12 12 C 1.39367 * 120.18019 * 0.29821 * 11 10 9 13 13 O 1.35628 * 119.82010 * 179.97438 * 12 11 10 14 14 C 1.35221 * 117.99749 * 76.56533 * 13 12 11 15 15 C 1.36431 * 125.54744 * 175.64051 * 14 13 12 16 16 C 1.39521 * 107.23294 * 179.97438 * 15 14 13 17 17 C 1.38467 * 106.66926 * 0.02562 * 16 15 14 18 18 C 1.40657 * 126.07237 * 180.02562 * 17 16 15 19 19 O 1.21535 * 119.99355 * 0.02562 * 18 17 16 20 20 O 1.34012 * 125.55313 * 355.33569 * 14 13 12 21 21 C 1.39354 * 120.35746 * 0.02562 * 12 11 10 22 22 C 1.36409 * 120.18305 * 359.97438 * 21 12 11 23 23 H 0.97001 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.08981 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.91402 * 180.28233 * 11 10 9 26 26 H 1.07999 * 126.38083 * 359.94723 * 15 14 13 27 27 H 1.08004 * 126.66640 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.00161 * 180.02562 * 18 17 16 29 29 H 1.08007 * 119.90833 * 179.97438 * 21 12 11 30 30 H 1.08002 * 120.09405 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6965 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0636 -1.2258 0.2286 9 6 1.3346 -2.4153 -0.3005 10 6 1.7997 -3.6367 0.2248 11 6 1.1398 -4.7948 -0.0652 12 6 0.0121 -4.7726 -0.8838 13 8 -0.6380 -5.9285 -1.1678 14 6 -1.4343 -6.4600 -0.2129 15 6 -2.2212 -7.5647 -0.3608 16 6 -2.8745 -7.7725 0.8544 17 6 -2.4526 -6.7681 1.7091 18 6 -2.8592 -6.5913 3.0439 19 8 -3.6530 -7.3636 3.5445 20 8 -1.5748 -5.9909 1.0346 21 6 -0.4504 -3.5692 -1.4129 22 6 0.1981 -2.4024 -1.1325 23 1 -0.4850 0.8401 0.0004 24 1 2.6734 -3.6556 0.8593 25 1 1.4924 -5.7316 0.3405 26 1 -2.3202 -8.1659 -1.2524 27 1 -3.5735 -8.5632 1.0839 28 1 -2.4661 -5.7695 3.6239 29 1 -1.3248 -3.5604 -2.0468 30 1 -0.1618 -1.4706 -1.5430 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087565310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:02:14 Heat of formation + Delta-G solvation = -31.366600 kcal Electronic energy + Delta-G solvation = -17853.695224 eV Core-core repulsion = 14774.470117 eV Total energy + Delta-G solvation = -3079.225107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 258.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44610 -39.27144 -38.52447 -36.91847 -33.78436 -32.94041 -30.18182 -29.75834 -29.12952 -25.68435 -24.00182 -21.81199 -21.48311 -21.26802 -20.11949 -18.46497 -17.65266 -16.95105 -16.50927 -15.66643 -15.49755 -14.77245 -14.53648 -14.23950 -13.62798 -13.44436 -13.00284 -12.98000 -12.74569 -12.43602 -12.17696 -12.05471 -11.42361 -11.30946 -11.12732 -10.66048 -10.15755 -9.91282 -9.89292 -9.63915 -9.46455 -7.92932 -7.88999 -7.57793 -7.07628 -4.70871 0.89534 2.07897 2.52176 2.75531 2.82745 2.91278 2.93410 3.05032 3.13280 3.69278 3.82298 4.37663 4.58591 4.96497 5.34105 5.53455 5.63417 5.72166 5.90623 5.99388 6.00612 6.40690 6.59918 6.71493 6.79417 6.84106 6.95130 7.19071 7.24938 7.55983 7.60500 7.68944 7.86996 8.07381 8.30346 8.51874 8.62790 9.85088 Molecular weight = 258.07amu Principal moments of inertia in cm(-1) A = 0.029727 B = 0.004814 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.677671 B = 5814.687727 C = 6285.061387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.121 3.879 10 C -0.217 4.217 11 C -0.073 4.073 12 C -0.114 4.114 13 O -0.182 6.182 14 C 0.256 3.744 15 C -0.282 4.282 16 C -0.063 4.063 17 C -0.185 4.185 18 C 0.424 3.576 19 O -0.474 6.474 20 O -0.167 6.167 21 C -0.078 4.078 22 C -0.159 4.159 23 H 0.288 0.712 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -4.935 0.090 5.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.118 3.882 10 C -0.236 4.236 11 C -0.092 4.092 12 C -0.156 4.156 13 O -0.093 6.093 14 C 0.158 3.842 15 C -0.302 4.302 16 C -0.083 4.083 17 C -0.233 4.233 18 C 0.288 3.712 19 O -0.353 6.353 20 O -0.066 6.066 21 C -0.097 4.097 22 C -0.178 4.178 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.177 0.823 27 H 0.178 0.822 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.126 -4.972 0.322 5.417 hybrid contribution 0.408 0.814 -0.088 0.915 sum -1.718 -4.158 0.234 4.505 Atomic orbital electron populations 1.69802 1.07745 1.30212 1.32494 1.26057 0.94913 1.01893 0.92014 0.86199 0.80080 0.79341 0.80303 1.18482 1.20004 1.18665 1.19727 0.97211 0.90718 1.39327 0.89657 1.17783 0.90797 0.92262 0.87389 1.20687 1.04035 0.92343 1.06568 1.20478 0.94782 0.97552 0.96342 1.18249 0.98369 0.83217 1.15781 1.84955 1.54651 1.38842 1.30863 1.22455 0.90622 0.91096 0.80073 1.20757 1.06102 1.01736 1.01568 1.22244 0.97391 0.97110 0.91573 1.21772 1.04397 0.98987 0.98115 1.21055 0.78761 0.86851 0.84490 1.90616 1.29144 1.44569 1.70931 1.84201 1.51672 1.48614 1.22080 1.20477 0.98646 0.91263 0.99308 1.20950 0.99539 0.96165 1.01171 0.90113 0.87874 0.88537 0.82286 0.82166 0.87883 0.88277 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.45 10.95 55.54 0.61 -17.85 16 2 C 0.07 1.63 5.19 -17.34 -0.09 1.54 16 3 Si 0.92 16.92 29.58 -169.99 -5.03 11.90 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 7 C -0.44 -10.64 9.04 -37.85 -0.34 -10.98 16 8 H 0.09 1.94 7.88 -52.49 -0.41 1.53 16 9 C 0.12 2.97 5.55 -106.80 -0.59 2.38 16 10 C -0.22 -4.95 9.74 -39.25 -0.38 -5.33 16 11 C -0.07 -1.59 9.76 -39.82 -0.39 -1.97 16 12 C -0.11 -2.52 5.44 -38.75 -0.21 -2.73 16 13 O -0.18 -3.68 10.01 -23.96 -0.24 -3.92 16 14 C 0.26 4.75 7.75 30.08 0.23 4.98 16 15 C -0.28 -4.36 10.88 -39.75 -0.43 -4.79 16 16 C -0.06 -0.94 10.58 -39.02 -0.41 -1.35 16 17 C -0.18 -3.01 7.04 -38.58 -0.27 -3.28 16 18 C 0.42 6.18 11.49 31.64 0.36 6.55 16 19 O -0.47 -7.84 17.61 5.34 0.09 -7.75 16 20 O -0.17 -3.16 10.14 -19.47 -0.20 -3.36 16 21 C -0.08 -1.76 9.92 -39.83 -0.40 -2.16 16 22 C -0.16 -3.84 8.61 -39.25 -0.34 -4.18 16 23 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 24 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 25 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 26 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 28 H 0.10 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 30 H 0.13 3.10 6.26 -52.49 -0.33 2.77 16 LS Contribution 281.41 15.07 4.24 4.24 Total: -1.00 -26.26 281.41 -6.20 -32.46 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -2.41 Total: 5.61 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -3.26 Total: -21.33 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.61 Total: -17.85 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.34 Total: -15.03 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.26 -6.20 -32.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087565310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.094 kcal (2) G-P(sol) polarization free energy of solvation -26.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds