Wall clock time and date at job start Mon Mar 30 2020 22:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48504 * 109.47076 * 264.80190 * 3 2 1 5 5 H 1.48491 * 109.47241 * 24.80444 * 3 2 1 6 6 H 1.48501 * 109.47204 * 144.80686 * 3 2 1 7 7 C 1.37884 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99674 * 359.90432 * 7 2 1 9 9 C 1.50700 * 119.99844 * 179.90804 * 7 2 1 10 10 H 1.09000 * 110.76764 * 328.60544 * 9 7 2 11 11 C 1.55398 * 110.84531 * 91.87051 * 9 7 2 12 12 C 1.54908 * 101.74040 * 153.85886 * 11 9 7 13 13 N 1.47846 * 104.79654 * 323.01678 * 12 11 9 14 14 C 1.46905 * 110.99865 * 146.36022 * 13 12 11 15 15 C 1.52999 * 109.46805 * 69.15814 * 14 13 12 16 16 H 1.08996 * 110.01858 * 305.70206 * 15 14 13 17 17 C 1.54269 * 110.03053 * 67.09319 * 15 14 13 18 18 C 1.54965 * 104.16065 * 142.86595 * 17 15 14 19 19 C 1.54894 * 102.77557 * 322.10721 * 18 17 15 20 20 C 1.53877 * 110.03292 * 184.30685 * 15 14 13 21 21 F 1.39897 * 110.03082 * 0.02562 * 20 15 14 22 22 F 1.39897 * 110.03033 * 121.38224 * 20 15 14 23 23 C 1.47442 * 108.56359 * 24.09842 * 13 12 11 24 24 H 0.96997 * 119.99719 * 0.02562 * 1 2 3 25 25 H 1.08994 * 110.87326 * 35.77138 * 11 9 7 26 26 H 1.09000 * 111.05894 * 272.02781 * 11 9 7 27 27 H 1.09002 * 110.37388 * 204.18993 * 12 11 9 28 28 H 1.09004 * 110.37270 * 81.84700 * 12 11 9 29 29 H 1.09000 * 109.47064 * 189.15682 * 14 13 12 30 30 H 1.08999 * 109.47458 * 309.16339 * 14 13 12 31 31 H 1.09005 * 110.48110 * 261.56986 * 17 15 14 32 32 H 1.08998 * 110.48878 * 24.20975 * 17 15 14 33 33 H 1.09004 * 110.76360 * 203.77947 * 18 17 15 34 34 H 1.08996 * 110.72371 * 80.42279 * 18 17 15 35 35 H 1.08993 * 110.48869 * 279.24373 * 19 18 17 36 36 H 1.09001 * 110.59945 * 156.65424 * 19 18 17 37 37 H 1.09007 * 109.88866 * 118.41684 * 23 13 12 38 38 H 1.08999 * 109.88769 * 239.43648 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6065 1.9830 -1.3944 5 1 1.3961 2.6818 0.5873 6 1 3.4875 1.4744 0.8069 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0006 9 6 3.5116 -1.1941 -0.0026 10 1 3.8973 -0.3243 -0.5344 11 6 4.0666 -1.2409 1.4481 12 6 5.4509 -1.9027 1.2348 13 7 5.2299 -2.9061 0.1717 14 6 6.4196 -3.0420 -0.6794 15 6 7.5459 -3.7002 0.1200 16 1 7.7253 -3.1435 1.0398 17 6 7.1758 -5.1610 0.4500 18 6 8.5170 -5.9281 0.3312 19 6 9.1980 -5.2418 -0.8790 20 6 8.8313 -3.7514 -0.7243 21 9 8.6022 -3.1809 -1.9810 22 9 9.8621 -3.0687 -0.0697 23 6 4.0563 -2.4982 -0.6221 24 1 -0.4849 0.8400 -0.0004 25 1 3.4334 -1.8572 2.0864 26 1 4.1728 -0.2371 1.8594 27 1 5.7846 -2.3885 2.1517 28 1 6.1803 -1.1604 0.9104 29 1 6.1789 -3.6599 -1.5444 30 1 6.7407 -2.0560 -1.0152 31 1 6.7817 -5.2349 1.4637 32 1 6.4526 -5.5434 -0.2703 33 1 8.3413 -6.9844 0.1277 34 1 9.1149 -5.8016 1.2337 35 1 8.8018 -5.6370 -1.8143 36 1 10.2790 -5.3751 -0.8371 37 1 4.3513 -2.3223 -1.6567 38 1 3.2929 -3.2752 -0.5814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397622708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:01:45 Heat of formation + Delta-G solvation = -113.373669 kcal Electronic energy + Delta-G solvation = -20229.518236 eV Core-core repulsion = 16934.580879 eV Total energy + Delta-G solvation = -3294.937358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.98365 -47.03737 -38.76723 -37.08315 -33.23678 -31.66719 -29.02711 -28.50013 -27.90492 -24.82250 -23.38066 -21.43663 -20.77797 -19.66737 -19.44363 -17.66862 -17.17270 -16.74532 -16.11312 -15.19110 -14.95737 -14.53639 -14.35644 -13.95922 -13.77941 -13.58193 -13.35591 -13.04194 -12.63722 -12.42282 -12.21287 -12.03846 -11.90422 -11.43427 -11.26690 -11.10042 -10.97835 -10.73001 -10.69693 -10.57839 -10.38639 -10.12350 -9.81989 -9.59547 -9.10335 -8.55112 -7.79268 -6.09731 -4.08174 3.26414 3.35202 3.36810 3.61354 3.80807 4.06118 4.22651 4.40014 4.59899 4.89609 4.97942 5.04346 5.15461 5.18285 5.26565 5.35027 5.46983 5.58408 5.66763 5.73397 5.82221 5.88685 5.94357 6.03457 6.10615 6.11962 6.20361 6.25946 6.60462 6.80426 6.84660 7.13913 7.22782 7.56653 7.61970 7.74913 8.51304 8.95310 9.53292 11.03411 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.037579 B = 0.004849 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.919819 B = 5772.820870 C = 6010.786708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.001 3.999 10 H 0.030 0.970 11 C -0.130 4.130 12 C 0.038 3.962 13 N -0.528 5.528 14 C 0.061 3.939 15 C -0.126 4.126 16 H 0.098 0.902 17 C -0.101 4.101 18 C -0.126 4.126 19 C -0.160 4.160 20 C 0.281 3.719 21 F -0.198 7.198 22 F -0.202 7.202 23 C 0.055 3.945 24 H 0.264 0.736 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.231 -9.867 0.148 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.542 4.542 8 H 0.094 0.906 9 C -0.019 4.019 10 H 0.048 0.952 11 C -0.168 4.168 12 C -0.090 4.090 13 N -0.252 5.252 14 C -0.068 4.068 15 C -0.146 4.146 16 H 0.116 0.884 17 C -0.139 4.139 18 C -0.164 4.164 19 C -0.198 4.198 20 C 0.244 3.756 21 F -0.179 7.179 22 F -0.183 7.183 23 C -0.072 4.072 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.981 -10.197 0.340 20.674 hybrid contribution 0.738 2.036 -0.490 2.221 sum 18.720 -8.160 -0.150 20.421 Atomic orbital electron populations 1.69896 1.06279 1.26978 1.50653 1.25047 0.94680 0.98975 0.94376 0.86897 0.80272 0.83761 0.78659 1.20366 1.21530 1.18956 1.20939 0.88160 0.94518 1.50611 0.90595 1.20296 0.97195 0.92979 0.91394 0.95159 1.23103 0.93647 0.99082 1.01001 1.23093 0.98493 0.92657 0.94754 1.63599 1.03166 1.46248 1.12220 1.22230 0.90266 0.99187 0.95142 1.22771 0.92238 1.00085 0.99457 0.88371 1.22275 0.96457 0.91528 1.03589 1.22555 0.96845 0.99972 0.97023 1.23336 1.02983 0.91552 1.01898 1.21955 0.86647 0.89398 0.77553 1.92990 1.94834 1.87049 1.43048 1.92998 1.61585 1.82424 1.81245 1.22900 0.90921 0.98918 0.94466 0.92635 0.90933 0.92612 0.91620 0.94871 0.90436 0.94476 0.89985 0.90132 0.90111 0.90794 0.88456 0.89325 0.94324 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.52 26.78 -169.99 -4.55 16.97 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.22 6.04 56.52 0.34 -5.88 16 7 C -0.50 -13.92 8.91 -34.44 -0.31 -14.22 16 8 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 9 C 0.00 0.03 2.32 -89.81 -0.21 -0.18 16 10 H 0.03 0.72 6.01 -51.93 -0.31 0.41 16 11 C -0.13 -2.70 6.36 -24.45 -0.16 -2.86 16 12 C 0.04 0.66 5.73 -2.30 -0.01 0.64 16 13 N -0.53 -9.13 4.97 -231.24 -1.15 -10.28 16 14 C 0.06 0.90 2.96 -3.82 -0.01 0.89 16 15 C -0.13 -1.55 2.78 -89.50 -0.25 -1.80 16 16 H 0.10 1.26 7.23 -51.93 -0.38 0.88 16 17 C -0.10 -1.04 6.18 -25.03 -0.15 -1.19 16 18 C -0.13 -1.01 6.91 -24.69 -0.17 -1.18 16 19 C -0.16 -1.41 6.40 -25.07 -0.16 -1.57 16 20 C 0.28 3.37 2.53 -25.61 -0.06 3.31 16 21 F -0.20 -2.73 15.46 2.25 0.03 -2.70 16 22 F -0.20 -2.67 17.04 2.25 0.04 -2.64 16 23 C 0.05 1.11 6.44 -2.84 -0.02 1.09 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 26 H 0.06 1.16 7.08 -51.93 -0.37 0.80 16 27 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 28 H 0.03 0.57 7.62 -51.93 -0.40 0.17 16 29 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 30 H 0.04 0.60 7.49 -51.93 -0.39 0.21 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 37 H 0.04 0.74 7.55 -51.93 -0.39 0.35 16 38 H 0.08 1.65 7.66 -51.93 -0.40 1.25 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -29.45 300.69 -7.93 -37.38 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.00 Total: -1.58 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.61 Total: -15.15 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.37 Total: -36.82 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.07 Total: -5.33 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.55 Total: 16.97 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.45 -7.93 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397622708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.990 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds