Wall clock time and date at job start Mon Mar 30 2020 22:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 H 1.08993 * 109.46973 * 54.37470 * 3 2 1 5 5 N 1.46498 * 109.47097 * 294.36830 * 3 2 1 6 6 C 1.39687 * 119.99487 * 123.56022 * 5 3 2 7 7 C 1.39336 * 119.95138 * 351.88544 * 6 5 3 8 8 C 1.38479 * 120.42229 * 180.02562 * 7 6 5 9 9 C 1.37685 * 120.32655 * 0.02562 * 8 7 6 10 10 C 1.40745 * 119.89593 * 359.96989 * 9 8 7 11 11 C 1.41407 * 120.21303 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99733 * 331.67216 * 11 10 9 13 13 C 1.39933 * 120.00030 * 151.66625 * 11 10 9 14 14 N 1.30828 * 120.00143 * 342.21971 * 13 11 10 15 15 Si 1.86800 * 119.99508 * 162.21885 * 13 11 10 16 16 H 1.48500 * 109.47001 * 265.03138 * 15 13 11 17 17 H 1.48497 * 109.47259 * 25.03558 * 15 13 11 18 18 H 1.48503 * 109.46737 * 145.03607 * 15 13 11 19 19 C 1.38277 * 119.95285 * 172.11986 * 6 5 3 20 20 C 1.53003 * 109.47036 * 174.37473 * 3 2 1 21 21 H 1.09003 * 115.55042 * 34.33195 * 20 3 2 22 22 C 1.52997 * 117.49934 * 248.62344 * 20 3 2 23 23 C 1.53000 * 60.00246 * 252.51006 * 22 20 3 24 24 H 1.08999 * 117.50080 * 107.48269 * 23 22 20 25 25 C 1.52996 * 117.49793 * 252.51564 * 23 22 20 26 26 H 1.08993 * 109.47069 * 305.27295 * 1 2 3 27 27 H 1.09007 * 109.46693 * 65.26675 * 1 2 3 28 28 H 1.08999 * 109.47302 * 185.26942 * 1 2 3 29 29 H 1.09000 * 109.47298 * 240.00290 * 2 1 3 30 30 H 1.08996 * 109.47419 * 119.99934 * 2 1 3 31 31 H 0.96994 * 120.00467 * 303.56740 * 5 3 2 32 32 H 1.07997 * 119.79092 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.83383 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.05056 * 179.97438 * 9 8 7 35 35 H 0.96992 * 120.00140 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.16001 * 0.02562 * 19 6 5 37 37 H 1.09002 * 117.49970 * 359.97438 * 22 20 3 38 38 H 1.09000 * 117.50004 * 145.01738 * 22 20 3 39 39 H 1.08995 * 109.47390 * 128.61979 * 25 23 22 40 40 H 1.09004 * 109.46556 * 248.61760 * 25 23 22 41 41 H 1.09001 * 109.47214 * 8.61174 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 0.8353 5 7 1.6655 2.0929 -1.2582 6 6 0.9181 3.2728 -1.2389 7 6 0.3856 3.7395 -0.0388 8 6 -0.3573 4.9078 -0.0086 9 6 -0.5783 5.6212 -1.1652 10 6 -0.0467 5.1623 -2.3849 11 6 -0.2700 5.8894 -3.5770 12 1 -1.1609 6.4904 -3.6839 13 6 0.6633 5.8304 -4.6179 14 7 1.8789 5.4075 -4.3833 15 14 0.1735 6.3555 -6.3423 16 1 -0.2440 5.1632 -7.1229 17 1 -0.9556 7.3169 -6.2651 18 1 1.3309 7.0037 -7.0098 19 6 0.7037 3.9735 -2.4115 20 6 3.5635 1.4448 0.1414 21 1 4.0816 0.6157 -0.3406 22 6 4.1509 1.9815 1.4482 23 6 4.2690 2.8023 0.1624 24 1 3.6478 3.6937 0.0754 25 6 5.6480 2.8919 -0.4943 26 1 -0.3633 0.5934 0.8389 27 1 -0.3633 0.4300 -0.9335 28 1 -0.3634 -1.0233 0.0944 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9364 1.7042 -2.1045 32 1 0.5526 3.1861 0.8735 33 1 -0.7660 5.2605 0.9269 34 1 -1.1587 6.5316 -1.1366 35 1 2.5258 5.3662 -5.1048 36 1 1.1124 3.6105 -3.3430 37 1 3.4520 2.3335 2.2071 38 1 5.0556 1.5055 1.8263 39 1 5.5666 2.6259 -1.5482 40 1 6.0276 3.9098 -0.4047 41 1 6.3323 2.2040 0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322199708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:04:22 Heat of formation + Delta-G solvation = 26.824478 kcal Electronic energy + Delta-G solvation = -19448.819675 eV Core-core repulsion = 16714.191295 eV Total energy + Delta-G solvation = -2734.628380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.80907 -37.19197 -35.01500 -33.42129 -31.91862 -29.41894 -28.84977 -27.56024 -25.26167 -25.09990 -21.80406 -21.36715 -20.33695 -20.04268 -19.43002 -17.20711 -15.80553 -15.47383 -14.92968 -14.66986 -14.34688 -14.04352 -13.64179 -13.12063 -12.86919 -12.77807 -12.40496 -12.22455 -12.02315 -11.81818 -11.62219 -11.41818 -11.11478 -11.05408 -10.98823 -10.76431 -10.71070 -10.45240 -10.18781 -9.92690 -9.61271 -9.41207 -9.30396 -9.16702 -8.68300 -7.24642 -6.67541 -6.08852 -4.26669 2.90508 3.13164 3.17153 3.26473 3.36745 3.90344 4.02429 4.53960 4.74166 4.77697 5.17345 5.20693 5.32767 5.44739 5.48894 5.62330 5.71354 5.85449 5.91808 5.98812 6.00856 6.08618 6.10686 6.17344 6.30318 6.33729 6.35194 6.43178 6.57606 6.65552 6.73138 6.93656 7.16867 7.19872 7.40307 7.49986 7.87478 8.00164 8.15519 8.22473 8.55566 8.78682 8.90051 9.05719 9.16973 10.32510 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.006009 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.887210 B = 4658.475163 C = 5159.861618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.182 3.818 4 H 0.089 0.911 5 N -0.747 5.747 6 C 0.223 3.777 7 C -0.300 4.300 8 C -0.067 4.067 9 C -0.257 4.257 10 C 0.143 3.857 11 C -0.470 4.470 12 H 0.075 0.925 13 C 0.080 3.920 14 N -0.793 5.793 15 Si 0.901 3.099 16 H -0.270 1.270 17 H -0.263 1.263 18 H -0.280 1.280 19 C -0.227 4.227 20 C -0.163 4.163 21 H 0.096 0.904 22 C -0.178 4.178 23 C -0.136 4.136 24 H 0.110 0.890 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.387 0.613 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.276 0.724 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -8.344 6.024 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.075 3.925 4 H 0.107 0.893 5 N -0.378 5.378 6 C 0.124 3.876 7 C -0.322 4.322 8 C -0.085 4.085 9 C -0.278 4.278 10 C 0.139 3.861 11 C -0.501 4.501 12 H 0.093 0.907 13 C -0.137 4.137 14 N -0.419 5.419 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.187 1.187 18 H -0.205 1.205 19 C -0.251 4.251 20 C -0.182 4.182 21 H 0.114 0.886 22 C -0.216 4.216 23 C -0.154 4.154 24 H 0.128 0.872 25 C -0.175 4.175 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.220 0.780 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.337 -8.389 6.098 11.242 hybrid contribution 0.091 0.112 -1.132 1.142 sum 4.428 -8.277 4.966 10.619 Atomic orbital electron populations 1.21675 0.95466 1.00335 1.02795 1.21873 0.96492 0.97024 1.01341 1.20397 0.90141 0.92464 0.89503 0.89320 1.44370 1.61219 1.26527 1.05687 1.17601 0.90415 0.85326 0.94260 1.19914 1.14138 1.02815 0.95336 1.20286 0.97362 0.94650 0.96243 1.20875 1.12010 1.01943 0.92934 1.17315 0.87718 0.89443 0.91576 1.19523 1.05966 1.26059 0.98508 0.90671 1.25825 0.94075 0.93379 1.00457 1.69865 1.02767 1.35690 1.33572 0.86420 0.79199 0.79485 0.82264 1.19555 1.18694 1.20496 1.20606 1.11319 0.97747 0.95422 1.22907 0.96431 0.97791 1.01108 0.88635 1.23112 1.02534 1.04663 0.91255 1.22240 0.98007 0.95842 0.99358 0.87237 1.21311 0.94408 1.01442 1.00338 0.92920 0.92003 0.93709 0.92368 0.91954 0.78005 0.89575 0.89802 0.89506 0.91312 0.87286 0.89154 0.89434 0.92281 0.92394 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.74 37.16 0.36 -1.63 16 2 C -0.13 -1.68 5.59 -26.73 -0.15 -1.82 16 3 C 0.18 2.77 2.46 -67.93 -0.17 2.61 16 4 H 0.09 1.47 5.08 -51.93 -0.26 1.21 16 5 N -0.75 -13.72 4.54 -52.22 -0.24 -13.95 16 6 C 0.22 5.02 6.63 -83.86 -0.56 4.47 16 7 C -0.30 -6.65 9.31 -39.08 -0.36 -7.02 16 8 C -0.07 -1.53 10.01 -39.69 -0.40 -1.93 16 9 C -0.26 -6.52 9.79 -38.84 -0.38 -6.90 16 10 C 0.14 3.87 5.52 -106.85 -0.59 3.28 16 11 C -0.47 -12.79 9.03 -37.74 -0.34 -13.13 16 12 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 13 C 0.08 2.05 5.10 -17.34 -0.09 1.96 16 14 N -0.79 -20.88 11.24 55.55 0.62 -20.25 16 15 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 C -0.23 -5.86 8.51 -38.67 -0.33 -6.19 16 20 C -0.16 -2.28 5.08 -90.62 -0.46 -2.74 16 21 H 0.10 1.25 8.11 -51.93 -0.42 0.83 16 22 C -0.18 -2.30 9.82 -26.73 -0.26 -2.56 16 23 C -0.14 -2.07 6.00 -90.62 -0.54 -2.61 16 24 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 25 C -0.12 -1.59 10.19 37.16 0.38 -1.22 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 6.98 8.84 -40.82 -0.36 6.62 16 32 H 0.09 1.74 5.76 -52.49 -0.30 1.43 16 33 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 36 H 0.11 2.93 6.47 -52.48 -0.34 2.59 16 37 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 38 H 0.09 0.98 8.05 -51.93 -0.42 0.57 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -27.16 334.98 -10.18 -37.34 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.70 Total: 13.15 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: -3.89 Total: -35.44 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.39 Total: -34.21 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.16 -10.18 -37.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322199708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.166 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds