Wall clock time and date at job start Mon Mar 30 2020 22:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 H 1.08993 * 109.46973 * 54.37470 * 3 2 1 5 5 N 1.46498 * 109.47097 * 294.36830 * 3 2 1 6 6 C 1.39687 * 119.99487 * 123.56022 * 5 3 2 7 7 C 1.39336 * 119.95138 * 351.88544 * 6 5 3 8 8 C 1.38479 * 120.42229 * 180.02562 * 7 6 5 9 9 C 1.37685 * 120.32655 * 0.02562 * 8 7 6 10 10 C 1.40745 * 119.89593 * 359.96989 * 9 8 7 11 11 C 1.41407 * 120.21303 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99733 * 331.67216 * 11 10 9 13 13 C 1.39933 * 120.00030 * 151.66625 * 11 10 9 14 14 N 1.30828 * 120.00143 * 342.21971 * 13 11 10 15 15 Si 1.86800 * 119.99508 * 162.21885 * 13 11 10 16 16 H 1.48500 * 109.47001 * 265.03138 * 15 13 11 17 17 H 1.48497 * 109.47259 * 25.03558 * 15 13 11 18 18 H 1.48503 * 109.46737 * 145.03607 * 15 13 11 19 19 C 1.38277 * 119.95285 * 172.11986 * 6 5 3 20 20 C 1.53003 * 109.47036 * 174.37473 * 3 2 1 21 21 H 1.09003 * 115.55042 * 34.33195 * 20 3 2 22 22 C 1.52997 * 117.49934 * 248.62344 * 20 3 2 23 23 C 1.53000 * 60.00246 * 252.51006 * 22 20 3 24 24 H 1.08999 * 117.50080 * 107.48269 * 23 22 20 25 25 C 1.52996 * 117.49793 * 252.51564 * 23 22 20 26 26 H 1.08993 * 109.47069 * 305.27295 * 1 2 3 27 27 H 1.09007 * 109.46693 * 65.26675 * 1 2 3 28 28 H 1.08999 * 109.47302 * 185.26942 * 1 2 3 29 29 H 1.09000 * 109.47298 * 240.00290 * 2 1 3 30 30 H 1.08996 * 109.47419 * 119.99934 * 2 1 3 31 31 H 0.96994 * 120.00467 * 303.56740 * 5 3 2 32 32 H 1.07997 * 119.79092 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.83383 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.05056 * 179.97438 * 9 8 7 35 35 H 0.96992 * 120.00140 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.16001 * 0.02562 * 19 6 5 37 37 H 1.09002 * 117.49970 * 359.97438 * 22 20 3 38 38 H 1.09000 * 117.50004 * 145.01738 * 22 20 3 39 39 H 1.08995 * 109.47390 * 128.61979 * 25 23 22 40 40 H 1.09004 * 109.46556 * 248.61760 * 25 23 22 41 41 H 1.09001 * 109.47214 * 8.61174 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 0.8353 5 7 1.6655 2.0929 -1.2582 6 6 0.9181 3.2728 -1.2389 7 6 0.3856 3.7395 -0.0388 8 6 -0.3573 4.9078 -0.0086 9 6 -0.5783 5.6212 -1.1652 10 6 -0.0467 5.1623 -2.3849 11 6 -0.2700 5.8894 -3.5770 12 1 -1.1609 6.4904 -3.6839 13 6 0.6633 5.8304 -4.6179 14 7 1.8789 5.4075 -4.3833 15 14 0.1735 6.3555 -6.3423 16 1 -0.2440 5.1632 -7.1229 17 1 -0.9556 7.3169 -6.2651 18 1 1.3309 7.0037 -7.0098 19 6 0.7037 3.9735 -2.4115 20 6 3.5635 1.4448 0.1414 21 1 4.0816 0.6157 -0.3406 22 6 4.1509 1.9815 1.4482 23 6 4.2690 2.8023 0.1624 24 1 3.6478 3.6937 0.0754 25 6 5.6480 2.8919 -0.4943 26 1 -0.3633 0.5934 0.8389 27 1 -0.3633 0.4300 -0.9335 28 1 -0.3634 -1.0233 0.0944 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9364 1.7042 -2.1045 32 1 0.5526 3.1861 0.8735 33 1 -0.7660 5.2605 0.9269 34 1 -1.1587 6.5316 -1.1366 35 1 2.5258 5.3662 -5.1048 36 1 1.1124 3.6105 -3.3430 37 1 3.4520 2.3335 2.2071 38 1 5.0556 1.5055 1.8263 39 1 5.5666 2.6259 -1.5482 40 1 6.0276 3.9098 -0.4047 41 1 6.3323 2.2040 0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322199708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:04:21 Heat of formation + Delta-G solvation = 14.663144 kcal Electronic energy + Delta-G solvation = -19449.347030 eV Core-core repulsion = 16714.191295 eV Total energy + Delta-G solvation = -2735.155735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23276 -38.80409 -36.45068 -35.23562 -33.40102 -31.35441 -30.09681 -29.04570 -27.12553 -26.51863 -23.23665 -22.77487 -21.94963 -21.33353 -20.89710 -19.07570 -17.58063 -16.86369 -16.55487 -16.32799 -15.84640 -15.29456 -14.94267 -14.59605 -14.51243 -14.11828 -14.00312 -13.70392 -13.52308 -13.25783 -13.03690 -12.78530 -12.76500 -12.58380 -12.29254 -12.19127 -12.12360 -11.91744 -11.61562 -11.50630 -11.28727 -11.07602 -10.88664 -10.61510 -10.33234 -9.20897 -8.60066 -7.82595 -6.30702 1.09829 1.35901 1.37742 1.50776 1.57849 2.23658 2.62327 2.84502 3.21236 3.60351 3.86135 4.05345 4.07968 4.18962 4.35459 4.38189 4.49499 4.53097 4.54479 4.79925 4.88711 4.91905 4.93666 4.98043 4.99908 5.04687 5.12415 5.21728 5.23457 5.25061 5.31707 5.37147 5.46224 5.48821 5.50003 5.65110 5.99818 6.13215 6.21521 6.31708 6.62144 6.98690 7.07772 7.11928 7.30371 8.41536 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.006009 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.887210 B = 4658.475163 C = 5159.861618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.178 3.822 4 H 0.078 0.922 5 N -0.739 5.739 6 C 0.235 3.765 7 C -0.299 4.299 8 C -0.064 4.064 9 C -0.287 4.287 10 C 0.112 3.888 11 C -0.510 4.510 12 H 0.069 0.931 13 C 0.040 3.960 14 N -0.824 5.824 15 Si 0.976 3.024 16 H -0.264 1.264 17 H -0.260 1.260 18 H -0.268 1.268 19 C -0.254 4.254 20 C -0.160 4.160 21 H 0.113 0.887 22 C -0.153 4.153 23 C -0.161 4.161 24 H 0.066 0.934 25 C -0.113 4.113 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.388 0.612 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.283 0.717 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -10.229 7.097 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.096 0.904 5 N -0.369 5.369 6 C 0.133 3.867 7 C -0.321 4.321 8 C -0.083 4.083 9 C -0.307 4.307 10 C 0.109 3.891 11 C -0.540 4.540 12 H 0.087 0.913 13 C -0.175 4.175 14 N -0.450 5.450 15 Si 0.797 3.203 16 H -0.188 1.188 17 H -0.184 1.184 18 H -0.193 1.193 19 C -0.278 4.278 20 C -0.179 4.179 21 H 0.131 0.869 22 C -0.190 4.190 23 C -0.180 4.180 24 H 0.084 0.916 25 C -0.170 4.170 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.221 0.779 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.290 -10.307 7.199 13.640 hybrid contribution -0.168 0.625 -1.321 1.471 sum 5.122 -9.682 5.878 12.431 Atomic orbital electron populations 1.21658 0.96089 1.01399 1.01003 1.21820 0.95796 0.95260 1.03001 1.20618 0.91302 0.93533 0.87236 0.90439 1.44470 1.59959 1.25135 1.07290 1.17641 0.89635 0.86006 0.93416 1.20232 1.13165 1.02638 0.96086 1.20641 0.96554 0.94373 0.96692 1.21012 1.13371 1.02860 0.93489 1.17696 0.88676 0.90239 0.92475 1.19750 1.06634 1.27517 1.00095 0.91315 1.26638 0.93601 0.93065 1.04194 1.69926 1.03645 1.36394 1.35030 0.85294 0.79025 0.79213 0.76735 1.18842 1.18428 1.19306 1.20502 1.12878 0.98514 0.95895 1.22884 0.95253 0.97387 1.02415 0.86939 1.23191 1.03199 1.02437 0.90155 1.22130 0.98491 0.94907 1.02426 0.91554 1.21268 0.94013 1.01907 0.99809 0.93441 0.94802 0.91497 0.91620 0.89237 0.77880 0.86964 0.86681 0.89550 0.90647 0.89248 0.89015 0.86727 0.93391 0.92882 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.74 71.98 0.70 -2.94 16 2 C -0.12 -2.76 5.59 30.60 0.17 -2.59 16 3 C 0.18 5.09 2.46 44.99 0.11 5.20 16 4 H 0.08 2.40 5.08 -2.39 -0.01 2.39 16 5 N -0.74 -27.00 4.54 -319.11 -1.45 -28.45 16 6 C 0.23 10.76 6.63 38.16 0.25 11.02 16 7 C -0.30 -13.16 9.31 22.59 0.21 -12.95 16 8 C -0.06 -2.94 10.01 22.20 0.22 -2.72 16 9 C -0.29 -15.06 9.79 22.75 0.22 -14.83 16 10 C 0.11 6.39 5.52 -21.31 -0.12 6.27 16 11 C -0.51 -29.12 9.03 23.46 0.21 -28.91 16 12 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 13 C 0.04 2.09 5.10 85.25 0.44 2.53 16 14 N -0.82 -44.95 11.24 21.82 0.25 -44.70 16 15 Si 0.98 40.17 29.59 68.60 2.03 42.20 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 19 C -0.25 -13.69 8.51 22.86 0.19 -13.49 16 20 C -0.16 -4.06 5.08 -10.79 -0.05 -4.12 16 21 H 0.11 2.54 8.11 -2.39 -0.02 2.52 16 22 C -0.15 -3.44 9.82 30.59 0.30 -3.14 16 23 C -0.16 -4.72 6.00 -10.79 -0.06 -4.79 16 24 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 25 C -0.11 -2.91 10.19 71.98 0.73 -2.18 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.03 1.03 7.92 -2.38 -0.02 1.01 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.39 14.06 8.84 -92.71 -0.82 13.24 16 32 H 0.11 4.33 5.76 -2.91 -0.02 4.31 16 33 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 36 H 0.09 5.08 6.47 -2.91 -0.02 5.06 16 37 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 38 H 0.11 2.02 8.05 -2.39 -0.02 2.01 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 1.52 7.90 -2.39 -0.02 1.50 16 Total: -1.00 -61.69 334.98 4.54 -57.15 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: 0.18 Total: 41.45 kcal Atomic # 6 Polarization: -71.17 SS G_CDS: 3.53 Total: -67.64 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -1.20 Total: -73.15 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -61.69 4.54 -57.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322199708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.810 kcal (2) G-P(sol) polarization free energy of solvation -61.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds