Wall clock time and date at job start Mon Mar 30 2020 22:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48506 * 109.46810 * 269.99953 * 3 2 1 5 5 H 1.48497 * 109.46902 * 29.99902 * 3 2 1 6 6 H 1.48497 * 109.46839 * 150.00082 * 3 2 1 7 7 C 1.38752 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00437 * 0.02562 * 7 2 1 9 9 O 1.34921 * 119.99990 * 180.02562 * 7 2 1 10 10 C 1.34317 * 117.00366 * 180.02562 * 9 7 2 11 11 O 1.21212 * 119.99351 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00490 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47152 * 179.97438 * 12 10 9 14 14 H 1.09002 * 115.54951 * 29.41887 * 13 12 10 15 15 C 1.53000 * 117.50107 * 243.74675 * 13 12 10 16 16 C 1.53002 * 117.49888 * 175.08913 * 13 12 10 17 17 H 1.08999 * 117.49664 * 0.02562 * 16 13 12 18 18 C 1.52999 * 117.49968 * 215.00840 * 16 13 12 19 19 C 1.50701 * 109.47250 * 174.99987 * 18 16 13 20 20 C 1.38240 * 119.99623 * 269.72244 * 19 18 16 21 21 C 1.38240 * 119.99643 * 179.76517 * 20 19 18 22 22 C 1.38232 * 119.99898 * 0.48614 * 21 20 19 23 23 C 1.38232 * 120.00091 * 359.78714 * 22 21 20 24 24 C 1.38231 * 120.00388 * 89.99309 * 19 18 16 25 25 H 0.96996 * 119.99999 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46895 * 59.99861 * 12 10 9 27 27 H 1.09000 * 109.47130 * 299.99896 * 12 10 9 28 28 H 1.09008 * 117.49673 * 359.97438 * 15 13 12 29 29 H 1.08999 * 117.49942 * 144.97366 * 15 13 12 30 30 H 1.09002 * 109.46825 * 294.99320 * 18 16 13 31 31 H 1.08997 * 109.47412 * 54.99052 * 18 16 13 32 32 H 1.08000 * 120.00068 * 359.97438 * 20 19 18 33 33 H 1.07994 * 119.99773 * 180.25478 * 21 20 19 34 34 H 1.08004 * 119.99836 * 179.77163 * 22 21 20 35 35 H 1.08004 * 120.00098 * 179.97438 * 23 22 21 36 36 H 1.08005 * 120.00015 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0464 -1.4002 5 1 1.4458 2.6526 0.7000 6 1 3.5459 1.4401 0.7000 7 6 2.0081 -1.2016 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3984 0.0010 11 8 3.3070 -3.4149 0.0010 12 6 5.4721 -2.4773 0.0010 13 6 5.9059 -3.9445 0.0016 14 1 5.2177 -4.6384 -0.4811 15 6 6.6819 -4.4513 1.2189 16 6 7.4028 -4.2386 -0.1145 17 1 8.0786 -3.3869 -0.1909 18 6 7.8193 -5.4842 -0.8994 19 6 9.3218 -5.5329 -1.0041 20 6 9.9598 -4.9347 -2.0747 21 6 11.3384 -4.9752 -2.1682 22 6 12.0784 -5.6226 -1.1965 23 6 11.4400 -6.2256 -0.1290 24 6 10.0618 -6.1806 -0.0327 25 1 -0.4850 0.8400 -0.0004 26 1 5.8618 -1.9832 0.8910 27 1 5.8618 -1.9832 -0.8890 28 1 6.8838 -3.7392 2.0192 29 1 6.5039 -5.4784 1.5373 30 1 7.4620 -6.3752 -0.3831 31 1 7.3864 -5.4454 -1.8990 32 1 9.3814 -4.4328 -2.8362 33 1 11.8371 -4.5043 -3.0024 34 1 13.1552 -5.6574 -1.2715 35 1 12.0181 -6.7318 0.6300 36 1 9.5631 -6.6521 0.8013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924260708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:02:16 Heat of formation + Delta-G solvation = -44.434726 kcal Electronic energy + Delta-G solvation = -17925.968153 eV Core-core repulsion = 14954.697986 eV Total energy + Delta-G solvation = -2971.270167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64827 -39.16952 -37.61124 -35.23882 -32.74984 -32.26376 -31.06252 -29.55151 -26.91452 -25.19132 -22.75822 -22.06229 -21.32121 -20.32376 -19.41137 -17.93206 -16.97971 -16.60773 -15.60521 -15.30712 -15.18621 -14.92603 -14.44023 -14.11818 -13.61382 -13.55943 -13.19941 -12.92395 -12.57922 -12.45380 -12.27881 -11.94728 -11.44612 -11.33038 -11.22149 -11.12322 -11.08954 -10.45095 -10.33850 -9.90734 -9.71613 -9.66254 -9.10755 -9.09881 -8.82342 -8.64873 -6.33519 -4.09107 1.17825 1.22010 3.17187 3.25650 3.37993 3.45431 3.58384 3.79271 4.18274 4.27961 4.59950 4.69497 4.80458 4.88377 4.94133 4.95395 5.14391 5.18646 5.29088 5.35796 5.41047 5.53963 5.64617 5.69155 5.84176 5.89787 5.90248 5.92785 5.97868 6.23950 6.30665 6.32568 6.48841 6.51771 6.54793 6.83416 7.78958 8.07634 8.67250 9.05488 9.73865 10.75322 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.003239 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.063603 B = 8641.455566 C = 8983.890366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.381 4.381 8 H 0.108 0.892 9 O -0.255 6.255 10 C 0.412 3.588 11 O -0.539 6.539 12 C -0.076 4.076 13 C -0.129 4.129 14 H 0.120 0.880 15 C -0.172 4.172 16 C -0.146 4.146 17 H 0.105 0.895 18 C -0.052 4.052 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.115 4.115 25 H 0.279 0.721 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.206 -8.884 -1.525 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.126 0.874 9 O -0.164 6.164 10 C 0.258 3.742 11 O -0.434 6.434 12 C -0.114 4.114 13 C -0.147 4.147 14 H 0.138 0.862 15 C -0.209 4.209 16 C -0.164 4.164 17 H 0.123 0.877 18 C -0.090 4.090 19 C -0.072 4.072 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.829 -9.006 -1.519 24.588 hybrid contribution 0.209 0.802 0.049 0.830 sum 23.038 -8.204 -1.470 24.499 Atomic orbital electron populations 1.69609 1.05705 1.28304 1.48102 1.24549 0.95009 0.98649 0.95690 0.86214 0.80269 0.81552 0.78871 1.19902 1.20820 1.18452 1.20647 0.76308 0.96904 1.51824 0.87394 1.83524 1.23893 1.31564 1.77462 1.22918 0.90632 0.82511 0.78177 1.90579 1.67093 1.36320 1.49399 1.20680 0.90503 0.95853 1.04364 1.22215 0.93244 0.96630 1.02581 0.86186 1.23222 1.03799 1.02431 0.91433 1.22382 0.94849 0.99281 0.99932 0.87738 1.20219 0.90686 0.97036 1.01011 1.19913 0.95745 0.97057 0.94500 1.21127 0.94566 0.99703 0.98172 1.21148 0.94139 0.99503 0.99019 1.21125 0.99720 0.98863 0.95056 1.21142 0.94674 0.99837 0.98226 1.21084 0.93897 0.99652 0.98682 0.91115 0.88979 0.88609 0.88841 0.88803 0.90707 0.90357 0.85941 0.86225 0.86392 0.86276 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.96 55.48 0.77 -25.61 16 2 C 0.06 1.87 5.49 -17.53 -0.10 1.77 16 3 Si 0.91 21.67 28.62 -169.99 -4.86 16.80 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.38 -11.53 10.10 30.92 0.31 -11.22 16 8 H 0.11 3.60 7.09 -52.48 -0.37 3.22 16 9 O -0.26 -6.85 8.58 -20.72 -0.18 -7.02 16 10 C 0.41 9.72 7.91 36.00 0.28 10.01 16 11 O -0.54 -14.35 14.80 -19.05 -0.28 -14.63 16 12 C -0.08 -1.27 6.09 -27.89 -0.17 -1.44 16 13 C -0.13 -1.89 5.13 -90.62 -0.46 -2.35 16 14 H 0.12 1.99 7.31 -51.93 -0.38 1.61 16 15 C -0.17 -2.12 9.83 -26.70 -0.26 -2.38 16 16 C -0.15 -1.68 5.44 -90.58 -0.49 -2.17 16 17 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 18 C -0.05 -0.54 5.63 -27.88 -0.16 -0.69 16 19 C -0.07 -0.73 5.09 -104.62 -0.53 -1.26 16 20 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 22 C -0.13 -1.10 10.05 -39.59 -0.40 -1.49 16 23 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 24 C -0.12 -1.09 9.70 -39.59 -0.38 -1.48 16 25 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.09 1.37 7.87 -51.93 -0.41 0.96 16 27 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.09 1.10 8.03 -51.92 -0.42 0.68 16 29 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 30 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 31 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -33.19 316.58 -8.23 -41.42 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.91 Total: 1.40 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -3.54 Total: -17.13 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.77 Total: -25.61 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.46 Total: -21.65 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.19 -8.23 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924260708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.011 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds