Wall clock time and date at job start Mon Mar 30 2020 22:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48499 * 109.47260 * 239.99888 * 3 2 1 5 5 H 1.48500 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47181 * 120.00078 * 3 2 1 7 7 C 1.37884 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00149 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.88714 * 62.42999 * 9 7 2 11 11 C 1.55404 * 111.07003 * 186.20681 * 9 7 2 12 12 C 1.54330 * 102.82837 * 153.48873 * 11 9 7 13 13 N 1.47029 * 107.39834 * 337.98203 * 12 11 9 14 14 C 1.34781 * 125.64404 * 178.82663 * 13 12 11 15 15 O 1.21778 * 119.99698 * 180.02562 * 14 13 12 16 16 C 1.41550 * 119.99975 * 0.02562 * 14 13 12 17 17 C 1.35624 * 119.99739 * 186.37915 * 16 14 13 18 18 C 1.41608 * 120.00132 * 9.02852 * 17 16 14 19 19 C 1.37946 * 126.10447 * 220.50981 * 18 17 16 20 20 C 1.40314 * 106.52908 * 179.97438 * 19 18 17 21 21 C 1.35156 * 107.20645 * 0.02562 * 20 19 18 22 22 O 1.34014 * 109.03306 * 359.75515 * 21 20 19 23 23 C 1.47424 * 108.70360 * 358.86032 * 13 12 11 24 24 H 0.96996 * 119.99608 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.69327 * 35.20475 * 11 9 7 26 26 H 1.08998 * 110.85376 * 271.84854 * 11 9 7 27 27 H 1.08996 * 109.88551 * 218.48499 * 12 11 9 28 28 H 1.09004 * 109.88263 * 97.47005 * 12 11 9 29 29 H 1.07999 * 120.00226 * 6.38417 * 16 14 13 30 30 H 1.08001 * 120.00051 * 189.02483 * 17 16 14 31 31 H 1.08006 * 126.73727 * 359.97438 * 19 18 17 32 32 H 1.08006 * 126.39846 * 180.02562 * 20 19 18 33 33 H 1.07996 * 125.48105 * 179.97438 * 21 20 19 34 34 H 1.09001 * 110.36152 * 142.96922 * 23 13 12 35 35 H 1.08995 * 110.36344 * 265.29007 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6481 -2.6006 -0.9007 11 6 2.2201 -3.7037 0.1589 12 6 1.3261 -4.7801 0.8100 13 7 0.2062 -4.0858 1.4623 14 6 -0.8074 -4.6788 2.1237 15 8 -1.6852 -4.0010 2.6268 16 6 -0.8515 -6.0893 2.2337 17 6 -1.9338 -6.6930 2.7846 18 6 -3.0956 -5.9368 3.0740 19 6 -3.8845 -6.0572 4.1992 20 6 -4.9172 -5.1169 4.0651 21 6 -4.7236 -4.4749 2.8916 22 8 -3.6256 -4.9661 2.3007 23 6 0.3753 -2.6336 1.2724 24 1 -0.4849 0.8400 -0.0004 25 1 3.0521 -3.4457 0.8140 26 1 2.5825 -4.0395 -0.8127 27 1 1.8981 -5.3387 1.5508 28 1 0.9469 -5.4588 0.0459 29 1 -0.0233 -6.6848 1.8789 30 1 -1.9098 -7.7505 3.0025 31 1 -3.7364 -6.7411 5.0219 32 1 -5.7175 -4.9392 4.7684 33 1 -5.3507 -3.6898 2.4957 34 1 -0.5924 -2.1561 1.1186 35 1 0.8834 -2.1954 2.1313 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706008708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:03:03 Heat of formation + Delta-G solvation = 6.998378 kcal Electronic energy + Delta-G solvation = -19305.745996 eV Core-core repulsion = 16271.280225 eV Total energy + Delta-G solvation = -3034.465772 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11501 -39.38093 -36.81345 -33.77442 -32.97652 -32.54973 -30.67832 -28.61104 -27.93464 -25.35146 -23.53956 -22.07293 -21.38422 -20.28696 -19.62554 -18.35500 -17.33223 -16.53359 -16.23161 -15.57800 -15.20579 -14.71663 -14.47813 -13.79692 -13.78261 -13.26300 -12.62176 -12.55856 -12.41154 -12.32095 -12.12024 -11.80231 -11.64372 -11.36626 -10.93328 -10.59856 -10.54771 -9.91345 -9.83446 -9.59474 -9.35651 -9.23738 -9.01271 -8.51253 -7.86676 -7.62132 -6.08425 -4.14234 0.81441 2.39385 2.91452 3.29674 3.35466 3.36757 3.48025 3.85509 3.90965 4.39379 4.92028 5.05959 5.22671 5.25059 5.27392 5.49645 5.51944 5.67875 5.80487 5.89768 5.94098 6.12114 6.17537 6.32335 6.47689 6.50088 6.74476 6.76107 6.90105 7.02261 7.14569 7.48280 7.51937 7.69395 7.91254 8.29621 8.34650 8.83821 8.89764 9.51564 11.00784 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.005148 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.679588 B = 5438.166203 C = 6260.238963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.046 3.954 10 H 0.037 0.963 11 C -0.130 4.130 12 C 0.101 3.899 13 N -0.610 5.610 14 C 0.539 3.461 15 O -0.535 6.535 16 C -0.184 4.184 17 C -0.018 4.018 18 C 0.018 3.982 19 C -0.192 4.192 20 C -0.230 4.230 21 C -0.017 4.017 22 O -0.129 6.129 23 C 0.121 3.879 24 H 0.264 0.736 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.133 0.867 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.196 0.804 34 H 0.083 0.917 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 -13.615 4.685 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.055 0.945 11 C -0.168 4.168 12 C -0.023 4.023 13 N -0.343 5.343 14 C 0.330 3.670 15 O -0.416 6.416 16 C -0.205 4.205 17 C -0.038 4.038 18 C -0.032 4.032 19 C -0.211 4.211 20 C -0.249 4.249 21 C -0.088 4.088 22 O -0.021 6.021 23 C 0.000 4.000 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.213 0.787 34 H 0.102 0.898 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.747 -13.050 4.692 14.658 hybrid contribution 0.470 0.918 0.252 1.062 sum -4.277 -12.132 4.944 13.781 Atomic orbital electron populations 1.69938 1.05958 1.27109 1.49214 1.25044 0.94885 0.99364 0.94575 0.86604 0.79559 0.82895 0.78652 1.20166 1.21242 1.20168 1.20937 0.92867 0.89795 1.52251 0.92111 1.19872 0.92034 0.92058 0.93312 0.94478 1.22778 0.98350 0.96282 0.99348 1.22032 0.88384 0.96033 0.95833 1.48880 1.23009 1.10456 1.51916 1.16759 0.81790 0.88384 0.80085 1.90841 1.37085 1.65924 1.47715 1.22479 0.99959 0.95523 1.02533 1.20542 0.89393 0.98341 0.95551 1.19578 0.97344 0.92581 0.93731 1.22044 0.96514 1.03481 0.99093 1.21553 1.02606 1.01390 0.99350 1.24128 0.89525 1.00341 0.94768 1.84321 1.33449 1.40326 1.44016 1.22657 1.02259 0.75999 0.99096 0.92611 0.91494 0.91717 0.92815 0.92606 0.84903 0.83117 0.83759 0.83913 0.78736 0.89822 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 12.06 55.43 0.67 -24.87 16 2 C 0.06 1.77 5.34 -17.82 -0.10 1.67 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.89 8.56 -34.44 -0.29 -14.19 16 8 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 9 C 0.05 1.14 2.96 -89.50 -0.26 0.87 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.13 -2.48 6.42 -24.76 -0.16 -2.64 16 12 C 0.10 1.71 5.98 -3.06 -0.02 1.69 16 13 N -0.61 -12.76 3.33 -173.94 -0.58 -13.34 16 14 C 0.54 11.02 7.41 -15.00 -0.11 10.91 16 15 O -0.54 -12.76 12.69 -19.68 -0.25 -13.01 16 16 C -0.18 -2.78 9.41 -39.25 -0.37 -3.15 16 17 C -0.02 -0.24 9.95 -39.23 -0.39 -0.64 16 18 C 0.02 0.30 5.31 -38.40 -0.20 0.09 16 19 C -0.19 -2.73 10.90 -38.91 -0.42 -3.16 16 20 C -0.23 -3.21 10.87 -39.90 -0.43 -3.64 16 21 C -0.02 -0.26 12.06 29.64 0.36 0.10 16 22 O -0.13 -2.39 7.84 -20.12 -0.16 -2.55 16 23 C 0.12 3.00 5.66 -2.53 -0.01 2.99 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.13 1.55 7.28 -52.49 -0.38 1.17 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 33 H 0.20 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.08 2.38 7.33 -51.93 -0.38 2.00 16 35 H 0.05 1.34 8.03 -51.93 -0.42 0.92 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -32.64 299.16 -7.77 -40.42 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.52 Total: 1.92 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.42 Total: -9.09 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.09 Total: -38.21 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.41 Total: -15.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.64 -7.77 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706008708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.414 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds