Wall clock time and date at job start Mon Mar 30 2020 22:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47092 * 274.65576 * 3 2 1 5 5 H 1.48501 * 109.47092 * 34.65371 * 3 2 1 6 6 H 1.48497 * 109.47284 * 154.65639 * 3 2 1 7 7 C 1.39886 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99726 * 162.15528 * 7 2 1 9 9 C 1.41223 * 120.00282 * 342.15824 * 7 2 1 10 10 C 1.40829 * 120.18048 * 155.13982 * 9 7 2 11 11 C 1.36438 * 119.81200 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18360 * 0.27972 * 11 10 9 13 13 O 1.35678 * 119.81904 * 179.71525 * 12 11 10 14 14 C 1.42895 * 116.99997 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46981 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47288 * 179.97438 * 15 14 13 17 17 O 1.42897 * 112.85011 * 53.80348 * 16 15 14 18 18 C 1.53780 * 113.61493 * 282.49910 * 16 15 14 19 19 C 1.53784 * 87.08249 * 220.01952 * 18 16 15 20 20 C 1.53776 * 113.61650 * 184.99871 * 16 15 14 21 21 C 1.39321 * 120.36585 * 359.44330 * 12 11 10 22 22 C 1.36442 * 120.18148 * 0.55238 * 21 12 11 23 23 H 0.96996 * 120.00147 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.09080 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.90878 * 179.97438 * 11 10 9 26 26 H 1.08999 * 109.47273 * 300.00291 * 14 13 12 27 27 H 1.08996 * 109.47624 * 60.00710 * 14 13 12 28 28 H 1.08999 * 109.46877 * 299.99948 * 15 14 13 29 29 H 1.09001 * 109.47096 * 60.00330 * 15 14 13 30 30 H 0.96707 * 113.99741 * 309.66794 * 17 16 15 31 31 H 1.09008 * 113.61414 * 334.56461 * 18 16 15 32 32 H 1.09000 * 113.61956 * 105.46729 * 18 16 15 33 33 H 1.09006 * 113.61138 * 270.88509 * 19 18 16 34 34 H 1.08991 * 113.61753 * 139.97951 * 19 18 16 35 35 H 1.09000 * 113.61869 * 254.53206 * 20 16 15 36 36 H 1.09001 * 113.61489 * 25.43325 * 20 16 15 37 37 H 1.07998 * 119.90672 * 180.27488 * 21 12 11 38 38 H 1.07994 * 120.08996 * 179.70434 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4138 0.5993 7 6 2.0082 -1.2115 0.0005 8 1 3.0493 -1.2341 -0.2861 9 6 1.3531 -2.4049 0.3758 10 6 1.8224 -3.6475 -0.0922 11 6 1.1834 -4.7958 0.2746 12 6 0.0662 -4.7410 1.1049 13 8 -0.5671 -5.8871 1.4604 14 6 -1.7065 -5.7609 2.3134 15 6 -2.2823 -7.1484 2.6038 16 6 -3.5020 -7.0134 3.5176 17 8 -4.4825 -6.1094 3.0046 18 6 -3.1426 -6.7635 4.9918 19 6 -4.2909 -7.7207 5.3524 20 6 -4.0850 -8.3625 3.9702 21 6 -0.4012 -3.5164 1.5769 22 6 0.2265 -2.3588 1.2196 23 1 -0.4850 0.8400 -0.0004 24 1 2.6857 -3.6913 -0.7397 25 1 1.5417 -5.7495 -0.0837 26 1 -1.4091 -5.2882 3.2494 27 1 -2.4627 -5.1491 1.8216 28 1 -2.5797 -7.6215 1.6679 29 1 -1.5261 -7.7599 3.0959 30 1 -4.1253 -5.2505 2.7400 31 1 -2.1577 -7.1384 5.2708 32 1 -3.3126 -5.7364 5.3147 33 1 -5.2547 -7.2239 5.4640 34 1 -4.0589 -8.3878 6.1825 35 1 -5.0159 -8.6263 3.4682 36 1 -3.3579 -9.1746 3.9698 37 1 -1.2653 -3.4829 2.2238 38 1 -0.1399 -1.4099 1.5825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396799708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:03:40 Heat of formation + Delta-G solvation = -58.092709 kcal Electronic energy + Delta-G solvation = -19064.001823 eV Core-core repulsion = 16064.827923 eV Total energy + Delta-G solvation = -2999.173901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96371 -38.65755 -36.41582 -34.75597 -33.42381 -31.44247 -29.65712 -28.97440 -26.05247 -25.35389 -24.43481 -22.13824 -20.95289 -20.21134 -19.78094 -17.46965 -17.25856 -16.26621 -15.71400 -15.46652 -15.14644 -15.01663 -14.44747 -13.96330 -13.63728 -13.14810 -12.90541 -12.68005 -12.44232 -12.23481 -11.90402 -11.79776 -11.39833 -11.25431 -11.12376 -11.07981 -11.00124 -10.91863 -10.56470 -10.23147 -9.91729 -9.80674 -9.75554 -9.38542 -9.02027 -7.67382 -7.03002 -6.74371 -4.26664 2.75478 2.94706 3.07375 3.11436 3.20363 3.89170 3.91995 3.94524 4.37764 4.54850 4.60208 4.67593 4.85325 5.15895 5.36909 5.39661 5.51418 5.54391 5.58736 5.64896 5.73572 5.80090 5.91631 6.05180 6.09075 6.17685 6.20253 6.26887 6.70970 6.87489 7.05291 7.26341 7.39351 7.52351 7.54315 7.88795 7.98558 8.13670 8.42841 8.63445 8.88752 8.97611 10.20579 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.003738 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.023178 B = 7487.897942 C = 7987.080456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.113 4.113 12 C -0.011 4.011 13 O -0.328 6.328 14 C 0.067 3.933 15 C -0.136 4.136 16 C 0.112 3.888 17 O -0.545 6.545 18 C -0.168 4.168 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.173 4.173 22 C -0.134 4.134 23 H 0.279 0.721 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.381 0.619 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -9.414 7.752 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.216 4.216 11 C -0.132 4.132 12 C -0.054 4.054 13 O -0.244 6.244 14 C -0.009 4.009 15 C -0.173 4.173 16 C 0.070 3.930 17 O -0.352 6.352 18 C -0.206 4.206 19 C -0.173 4.173 20 C -0.163 4.163 21 C -0.192 4.192 22 C -0.154 4.154 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.231 0.769 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.770 -9.934 7.803 14.332 hybrid contribution 0.553 1.548 -0.102 1.647 sum -6.217 -8.386 7.701 12.973 Atomic orbital electron populations 1.69840 1.07533 1.29062 1.36169 1.25876 0.94708 1.01231 0.92356 0.86333 0.80747 0.80826 0.79008 1.19638 1.20115 1.18479 1.19472 0.98093 0.91234 1.40540 0.90487 1.17596 0.91818 0.92178 0.89857 1.20601 1.03276 0.92245 1.05480 1.19613 0.95570 0.97675 1.00312 1.18575 0.97646 0.83867 1.05312 1.85794 1.42081 1.31043 1.65488 1.22347 0.88136 0.96673 0.93782 1.22063 0.96804 0.97486 1.00993 1.22141 0.87752 0.91710 0.91348 1.86438 1.35847 1.28305 1.84598 1.23662 0.99352 1.00820 0.96731 1.22752 0.99146 0.98558 0.96799 1.23018 1.01823 0.95032 0.96421 1.20595 1.01464 0.92929 1.04212 1.20935 0.98540 0.96442 0.99433 0.90996 0.88197 0.88544 0.93049 0.93308 0.90330 0.89961 0.76919 0.89204 0.90880 0.89905 0.91430 0.90595 0.88800 0.88875 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.64 10.97 55.54 0.61 -20.03 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.28 9.04 -37.83 -0.34 -12.62 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 9 C 0.09 2.34 5.57 -106.80 -0.60 1.75 16 10 C -0.20 -4.85 9.74 -39.25 -0.38 -5.23 16 11 C -0.11 -2.64 9.92 -39.83 -0.40 -3.04 16 12 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 13 O -0.33 -6.68 10.12 -18.74 -0.19 -6.87 16 14 C 0.07 1.05 4.30 37.16 0.16 1.21 16 15 C -0.14 -1.73 5.22 -26.73 -0.14 -1.86 16 16 C 0.11 1.27 1.38 -89.81 -0.12 1.15 16 17 O -0.54 -6.83 13.39 -35.23 -0.47 -7.30 16 18 C -0.17 -1.72 7.32 -25.92 -0.19 -1.91 16 19 C -0.14 -1.25 8.02 -25.92 -0.21 -1.46 16 20 C -0.13 -1.23 7.47 -25.92 -0.19 -1.42 16 21 C -0.17 -4.05 8.97 -39.83 -0.36 -4.40 16 22 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 23 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 24 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 25 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 26 H 0.05 0.79 7.54 -51.93 -0.39 0.40 16 27 H 0.05 0.75 6.27 -51.93 -0.33 0.43 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.98 8.05 -51.93 -0.42 0.57 16 30 H 0.38 4.08 7.18 45.56 0.33 4.41 16 31 H 0.09 0.86 8.03 -51.92 -0.42 0.44 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.09 1.91 6.27 -52.49 -0.33 1.58 16 38 H 0.12 3.19 6.18 -52.49 -0.32 2.87 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -28.75 313.48 -8.62 -37.37 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.81 Total: 8.90 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -3.46 Total: -30.37 kcal Atomic # 7 Polarization: -20.64 SS G_CDS: 0.61 Total: -20.03 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.66 Total: -14.17 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.75 -8.62 -37.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396799708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.725 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds