Wall clock time and date at job start Mon Mar 30 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50692 * 120.00137 * 2 1 4 4 N 1.46900 * 109.46956 * 124.19514 * 3 2 1 5 5 C 1.46905 * 111.00051 * 196.24045 * 4 3 2 6 6 C 1.50704 * 109.47032 * 66.04670 * 5 4 3 7 7 H 1.08002 * 119.99715 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00236 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00198 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99567 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47155 * 90.00230 * 10 8 6 12 12 H 1.48504 * 109.47038 * 210.00145 * 10 8 6 13 13 H 1.48501 * 109.47465 * 330.00341 * 10 8 6 14 14 C 1.46896 * 111.00075 * 72.28856 * 4 3 2 15 15 C 1.53005 * 109.47127 * 200.95725 * 14 4 3 16 16 H 1.08996 * 109.47322 * 305.76174 * 15 14 4 17 17 O 1.42909 * 109.46817 * 65.75793 * 15 14 4 18 18 C 1.52996 * 109.47136 * 185.75583 * 15 14 4 19 19 C 1.53001 * 109.47293 * 300.00446 * 18 15 14 20 20 C 1.53000 * 109.47145 * 180.02562 * 19 18 15 21 21 C 1.52994 * 109.47688 * 59.99709 * 20 19 18 22 22 C 1.53001 * 109.47065 * 300.00341 * 21 20 19 23 23 C 1.52994 * 109.47347 * 180.02562 * 18 15 14 24 24 H 1.07998 * 119.99689 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99642 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99642 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47182 * 4.19530 * 3 2 1 28 28 H 1.08998 * 109.47481 * 244.19906 * 3 2 1 29 29 H 1.08993 * 109.47119 * 186.04249 * 5 4 3 30 30 H 1.09001 * 109.47095 * 306.04635 * 5 4 3 31 31 H 0.96996 * 119.99970 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47297 * 320.95730 * 14 4 3 33 33 H 1.08997 * 109.47378 * 80.96038 * 14 4 3 34 34 H 0.96697 * 113.99713 * 62.12681 * 17 15 14 35 35 H 1.08999 * 109.47166 * 59.99804 * 18 15 14 36 36 H 1.09001 * 109.46972 * 299.99613 * 19 18 15 37 37 H 1.08994 * 109.47443 * 59.99819 * 19 18 15 38 38 H 1.09001 * 109.46602 * 299.99512 * 20 19 18 39 39 H 1.08998 * 109.46922 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47500 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47370 * 59.99684 * 21 20 19 42 42 H 1.09001 * 109.46972 * 300.00041 * 22 21 20 43 43 H 1.08994 * 109.47443 * 179.97438 * 22 21 20 44 44 H 1.09006 * 109.46875 * 300.00618 * 23 18 15 45 45 H 1.09007 * 109.47213 * 59.99469 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9825 1.3398 1.1456 5 6 3.4442 2.7094 1.4087 6 6 2.2799 3.5546 1.8572 7 1 1.2954 3.1180 1.9383 8 6 2.4713 4.8853 2.1631 9 7 1.4554 5.6227 2.5550 10 14 4.1741 5.6403 2.0222 11 1 4.3627 6.1843 0.6534 12 1 4.3130 6.7368 3.0141 13 1 5.2004 4.6002 2.2872 14 6 4.1186 0.4323 0.9369 15 6 4.7513 0.0884 2.2869 16 1 5.0071 1.0081 2.8131 17 8 3.8234 -0.6658 3.0695 18 6 6.0182 -0.7389 2.0605 19 6 5.6591 -2.0298 1.3219 20 6 6.9259 -2.8574 1.0960 21 6 7.5581 -3.2013 2.4461 22 6 7.9172 -1.9104 3.1847 23 6 6.6506 -1.0833 3.4104 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3577 2.1321 0.0752 28 1 2.6326 1.3961 -0.9252 29 1 4.2036 2.6929 2.1904 30 1 3.8695 3.1307 0.4978 31 1 1.5900 6.5590 2.7698 32 1 3.7700 -0.4815 0.4558 33 1 4.8594 0.9176 0.3016 34 1 3.5759 -1.5140 2.6767 35 1 6.7259 -0.1637 1.4635 36 1 4.9514 -2.6051 1.9188 37 1 5.2084 -1.7849 0.3602 38 1 7.6339 -2.2823 0.4992 39 1 6.6700 -3.7773 0.5702 40 1 8.4608 -3.7905 2.2851 41 1 6.8501 -3.7763 3.0429 42 1 8.6252 -1.3353 2.5879 43 1 8.3672 -2.1553 4.1467 44 1 6.9063 -0.1637 3.9369 45 1 5.9426 -1.6586 4.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:09:13 Heat of formation + Delta-G solvation = -50.533141 kcal Electronic energy + Delta-G solvation = -21489.578345 eV Core-core repulsion = 18506.516479 eV Total energy + Delta-G solvation = -2983.061867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.50834 -37.26335 -35.63664 -33.13572 -32.27618 -31.31320 -30.86593 -28.38734 -27.14470 -24.38375 -23.35916 -22.37596 -21.02479 -20.15051 -19.60197 -19.06179 -16.90590 -16.28535 -15.64583 -15.33282 -14.84297 -14.47607 -14.42251 -14.11520 -13.97853 -13.89987 -13.45541 -12.71480 -12.52500 -12.37899 -12.26389 -12.15819 -11.94700 -11.54856 -11.26522 -11.23051 -11.15428 -10.85255 -10.70591 -10.66511 -10.51042 -10.44699 -10.14472 -9.82893 -9.78130 -9.40899 -9.17380 -8.89476 -8.55260 -7.29918 -6.02533 -3.99147 2.75511 3.28395 3.36512 3.37781 4.43257 4.44800 4.61637 4.64801 4.78058 4.98246 5.11113 5.18205 5.28697 5.29228 5.35312 5.42764 5.45861 5.50337 5.52919 5.60195 5.66112 5.74610 5.84587 5.90710 5.93268 6.03198 6.06350 6.09304 6.14421 6.18472 6.25295 6.29609 6.41492 6.49949 6.56548 6.85849 6.93800 7.06391 7.30923 7.63450 7.91735 8.06530 8.12305 8.69272 9.07457 9.59291 11.10761 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.005687 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.448977 B = 4922.718785 C = 6101.681615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C 0.082 3.918 4 N -0.511 5.511 5 C 0.161 3.839 6 C -0.506 4.506 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.021 3.979 15 C 0.119 3.881 16 H 0.099 0.901 17 O -0.540 6.540 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.109 4.109 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.025 0.975 29 H 0.029 0.971 30 H -0.019 1.019 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.359 0.641 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.484 -17.007 -3.784 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.151 4.151 3 C -0.045 4.045 4 N -0.235 5.235 5 C 0.035 3.965 6 C -0.544 4.544 7 H 0.100 0.900 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.193 1.193 14 C -0.108 4.108 15 C 0.059 3.941 16 H 0.117 0.883 17 O -0.343 6.343 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.043 0.957 29 H 0.047 0.953 30 H -0.001 1.001 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.205 0.795 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.239 -16.437 -2.908 19.582 hybrid contribution 1.371 0.391 -1.181 1.851 sum 11.610 -16.046 -4.089 20.223 Atomic orbital electron populations 1.23730 0.95977 1.01339 1.02290 1.22879 0.95864 0.98053 0.98323 1.21216 0.96217 0.96030 0.91052 1.61897 1.14315 1.09600 1.37647 1.20231 0.97044 0.84671 0.94518 1.21033 0.95681 0.93436 1.44253 0.90046 1.24891 0.96386 0.97061 0.94949 1.69892 1.30361 1.07451 1.46224 0.86896 0.85702 0.79303 0.78024 1.20426 1.21134 1.19262 1.22868 0.93748 0.97569 0.96627 1.21935 0.86347 0.93989 0.91839 0.88296 1.86678 1.64337 1.34484 1.48845 1.21877 0.98229 0.96685 0.97087 1.21633 0.97636 0.96070 1.00307 1.21505 0.97331 0.99523 0.97104 1.21531 1.00181 0.97420 0.96510 1.21542 0.97851 0.96376 0.99951 1.21474 0.96556 0.99991 0.96681 0.89278 0.88406 0.88681 0.88573 0.95691 0.95291 1.00131 0.92712 0.91456 0.95188 0.79499 0.90818 0.91818 0.91718 0.92184 0.92282 0.92501 0.92038 0.92322 0.92275 0.92031 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 14.32 29.01 0.42 -2.60 16 2 C -0.13 -2.16 9.26 -36.03 -0.33 -2.49 16 3 C 0.08 1.59 5.24 -4.98 -0.03 1.56 16 4 N -0.51 -10.64 4.32 -237.52 -1.03 -11.67 16 5 C 0.16 3.94 3.61 -4.97 -0.02 3.92 16 6 C -0.51 -14.50 8.83 -34.44 -0.30 -14.80 16 7 H 0.08 2.56 7.50 -52.49 -0.39 2.16 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 10 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 14 C 0.02 0.34 3.95 -3.82 -0.02 0.33 16 15 C 0.12 1.85 2.88 -26.73 -0.08 1.77 16 16 H 0.10 1.82 6.72 -51.93 -0.35 1.47 16 17 O -0.54 -8.77 12.60 -35.23 -0.44 -9.22 16 18 C -0.12 -1.43 2.08 -90.62 -0.19 -1.62 16 19 C -0.12 -1.19 4.55 -26.73 -0.12 -1.31 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 22 C -0.12 -1.14 5.92 -26.75 -0.16 -1.30 16 23 C -0.11 -1.25 5.05 -26.76 -0.14 -1.39 16 24 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 25 H 0.10 1.59 7.84 -52.49 -0.41 1.18 16 26 H 0.10 1.36 7.09 -52.49 -0.37 0.98 16 27 H 0.10 2.13 6.23 -51.93 -0.32 1.80 16 28 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.03 0.72 5.70 -51.93 -0.30 0.43 16 30 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 0.96 5.17 -51.93 -0.27 0.69 16 33 H 0.03 0.49 7.98 -51.93 -0.41 0.08 16 34 H 0.36 4.57 7.26 45.56 0.33 4.90 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.61 6.73 -51.93 -0.35 0.26 16 37 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.84 7.68 -51.92 -0.40 0.44 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -31.00 341.68 -8.96 -39.96 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.37 Total: 4.21 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.38 Total: -18.41 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.25 Total: -38.70 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.44 Total: -9.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.00 -8.96 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.575 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds