Wall clock time and date at job start Mon Mar 30 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47100 * 2 1 4 4 C 1.53007 * 109.47113 * 240.00653 * 2 1 3 5 5 C 1.50702 * 109.47235 * 64.75798 * 4 2 1 6 6 H 1.08005 * 119.99827 * 0.72439 * 5 4 2 7 7 C 1.37873 * 120.00067 * 181.00422 * 5 4 2 8 8 N 1.31520 * 119.99964 * 359.71909 * 7 5 4 9 9 Si 1.86796 * 120.00033 * 179.72579 * 7 5 4 10 10 H 1.48498 * 109.47414 * 89.99653 * 9 7 5 11 11 H 1.48497 * 109.46942 * 209.99788 * 9 7 5 12 12 H 1.48504 * 109.47201 * 329.99741 * 9 7 5 13 13 N 1.46892 * 109.47426 * 120.00488 * 2 1 3 14 14 C 1.46851 * 111.00131 * 183.95820 * 13 2 1 15 15 C 1.53038 * 109.52420 * 185.84179 * 14 13 2 16 16 C 1.53120 * 109.27400 * 300.81269 * 15 14 13 17 17 C 1.53126 * 109.15814 * 57.66188 * 16 15 14 18 18 H 1.08990 * 109.50607 * 62.32184 * 17 16 15 19 19 C 1.53003 * 109.50121 * 182.40261 * 17 16 15 20 20 H 1.09004 * 110.43684 * 58.90518 * 19 17 16 21 21 C 1.54813 * 110.48820 * 296.21638 * 19 17 16 22 22 C 1.54992 * 102.09289 * 220.44492 * 21 19 17 23 23 O 1.44386 * 103.48809 * 37.02431 * 22 21 19 24 24 C 1.43739 * 106.97463 * 319.93719 * 23 22 21 25 25 C 1.46851 * 110.99935 * 308.16312 * 13 2 1 26 26 H 1.08999 * 109.47089 * 299.99123 * 1 2 3 27 27 H 1.08997 * 109.47602 * 59.99724 * 1 2 3 28 28 H 1.09003 * 109.46625 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46563 * 304.75879 * 4 2 1 30 30 H 1.08997 * 109.47170 * 184.75763 * 4 2 1 31 31 H 0.96996 * 119.99927 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.45957 * 305.85379 * 14 13 2 33 33 H 1.08994 * 109.46498 * 65.82054 * 14 13 2 34 34 H 1.09000 * 109.50656 * 60.75563 * 15 14 13 35 35 H 1.09007 * 109.50382 * 180.88026 * 15 14 13 36 36 H 1.09005 * 109.51955 * 177.55664 * 16 15 14 37 37 H 1.08990 * 109.52746 * 297.68886 * 16 15 14 38 38 H 1.09005 * 110.90436 * 338.64140 * 21 19 17 39 39 H 1.08997 * 110.90514 * 102.24590 * 21 19 17 40 40 H 1.08992 * 110.61693 * 278.52501 * 22 21 19 41 41 H 1.08997 * 110.75263 * 155.58693 * 22 21 19 42 42 H 1.09003 * 109.88242 * 267.09216 * 24 23 22 43 43 H 1.09003 * 110.00187 * 146.00975 * 24 23 22 44 44 H 1.08998 * 109.46383 * 294.17535 * 25 13 2 45 45 H 1.08994 * 109.45794 * 54.14780 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6362 0.0542 -2.4770 6 1 1.0823 0.9758 -2.3756 7 6 1.9688 -0.4160 -3.7296 8 7 2.6433 -1.5383 -3.8531 9 14 1.4616 0.5411 -5.2515 10 1 2.5289 1.5113 -5.6046 11 1 1.2543 -0.3997 -6.3816 12 1 0.1985 1.2725 -4.9782 13 7 2.0197 -0.6925 1.1993 14 6 3.4846 -0.6307 1.2814 15 6 3.9673 -1.4821 2.4579 16 6 3.3422 -0.9557 3.7528 17 6 1.8168 -0.9854 3.6229 18 1 1.4830 -2.0142 3.4882 19 6 1.1848 -0.4050 4.8896 20 1 1.5229 0.6190 5.0488 21 6 1.5221 -1.2869 6.1165 22 6 0.1798 -1.2922 6.8914 23 8 -0.8135 -1.3286 5.8442 24 6 -0.3526 -0.4574 4.7980 25 6 1.3964 -0.1484 2.4126 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6087 -1.7212 -1.2930 30 1 3.1266 -0.7956 -1.2078 31 1 2.8770 -1.8693 -4.7343 32 1 3.9166 -1.0118 0.3560 33 1 3.7968 0.4031 1.4291 34 1 3.6673 -2.5187 2.3042 35 1 5.0535 -1.4235 2.5282 36 1 3.6489 -1.5858 4.5877 37 1 3.6740 0.0677 3.9277 38 1 1.7965 -2.2954 5.8069 39 1 2.3144 -0.8357 6.7138 40 1 0.0768 -0.3850 7.4867 41 1 0.1028 -2.1761 7.5245 42 1 -0.7664 0.5412 4.9380 43 1 -0.6528 -0.8500 3.8265 44 1 1.7184 0.8831 2.5549 45 1 0.3119 -0.1792 2.3087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411399607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:10:02 Heat of formation + Delta-G solvation = -64.499006 kcal Electronic energy + Delta-G solvation = -21473.610676 eV Core-core repulsion = 18489.943204 eV Total energy + Delta-G solvation = -2983.667472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06945 -38.43823 -35.26941 -33.05733 -32.33468 -30.56136 -29.72493 -28.24741 -26.77151 -24.62956 -23.23313 -22.92807 -21.75617 -20.54571 -19.60839 -18.98244 -16.76318 -16.50465 -16.12938 -15.27365 -15.10232 -14.59952 -14.43273 -14.05660 -13.69497 -13.46702 -13.17616 -12.96539 -12.85916 -12.56204 -12.14479 -11.77982 -11.57226 -11.49056 -11.27626 -11.14887 -11.02851 -10.91105 -10.74199 -10.71963 -10.53200 -10.43716 -10.16937 -9.87080 -9.78749 -9.67349 -9.13717 -9.04710 -8.30701 -7.62985 -5.97729 -3.99237 3.32529 3.39118 3.41961 3.82818 4.26710 4.36515 4.49108 4.72832 4.75801 5.01788 5.03690 5.09885 5.14036 5.25216 5.38037 5.45289 5.52574 5.56762 5.63427 5.68537 5.74215 5.75962 5.81232 5.91464 5.95108 5.99060 6.03619 6.11914 6.14572 6.32324 6.34877 6.38051 6.51886 6.59570 6.73486 6.76358 6.95803 7.13749 7.58904 7.66919 7.85726 7.92857 8.12113 8.46587 9.07219 9.63786 11.13657 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.004042 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.709258 B = 6926.044794 C = 7493.578072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.025 0.975 4 C 0.034 3.966 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.533 5.533 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.074 4.074 18 H 0.081 0.919 19 C -0.116 4.116 20 H 0.080 0.920 21 C -0.148 4.148 22 C 0.045 3.955 23 O -0.380 6.380 24 C 0.047 3.953 25 C 0.054 3.946 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.087 0.913 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.023 0.977 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 1.736 19.869 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 H 0.043 0.957 4 C -0.003 4.003 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.257 5.257 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.093 4.093 18 H 0.100 0.900 19 C -0.135 4.135 20 H 0.098 0.902 21 C -0.186 4.186 22 C -0.032 4.032 23 O -0.299 6.299 24 C -0.029 4.029 25 C -0.075 4.075 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.041 0.959 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.977 1.012 19.678 19.729 hybrid contribution 0.276 1.573 -0.878 1.822 sum -0.701 2.585 18.801 18.990 Atomic orbital electron populations 1.21832 0.95519 1.01635 1.00131 1.21820 0.94755 0.95142 0.90358 0.95720 1.19140 0.96164 0.95986 0.89040 1.21210 1.35476 1.07883 0.91011 0.92745 1.24984 0.95317 0.95022 0.98997 1.69972 1.39347 1.20607 1.23346 0.86635 0.78919 0.79758 0.82919 1.20793 1.21247 1.19914 1.61997 1.05395 1.56495 1.01849 1.22107 0.88640 0.97434 0.99258 1.21588 0.99052 1.00614 0.94118 1.21615 0.94837 1.00699 0.97787 1.21241 0.95157 1.00524 0.92389 0.90017 1.22587 0.95356 1.00027 0.95521 0.90193 1.23192 0.97879 1.01199 0.96288 1.23538 0.87101 1.01561 0.90987 1.88876 1.44829 1.66936 1.29215 1.23346 0.93206 0.94191 0.92191 1.22228 0.99938 0.95219 0.90074 0.94886 0.91516 0.92599 0.95701 0.96486 0.93059 0.89474 0.95930 0.91180 0.92061 0.92281 0.92666 0.90133 0.90449 0.92540 0.89234 0.92630 0.89053 0.95907 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.50 37.16 0.32 -2.25 16 2 C 0.09 1.81 2.10 -67.72 -0.14 1.67 16 3 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.03 0.88 4.45 -27.88 -0.12 0.75 16 5 C -0.52 -14.43 8.39 -34.44 -0.29 -14.71 16 6 H 0.05 1.48 7.07 -52.48 -0.37 1.11 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.53 -9.64 4.52 -226.69 -1.03 -10.66 16 14 C 0.05 0.91 5.28 -3.83 -0.02 0.89 16 15 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 16 C -0.11 -1.30 5.06 -26.60 -0.13 -1.43 16 17 C -0.07 -0.91 1.66 -90.53 -0.15 -1.06 16 18 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 19 C -0.12 -1.18 2.61 -89.09 -0.23 -1.41 16 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.15 -1.29 5.80 -24.72 -0.14 -1.44 16 22 C 0.04 0.41 7.72 38.21 0.29 0.70 16 23 O -0.38 -4.70 11.52 -35.23 -0.41 -5.11 16 24 C 0.05 0.53 6.91 37.73 0.26 0.79 16 25 C 0.05 0.79 4.07 -3.83 -0.02 0.77 16 26 H 0.03 0.53 6.19 -51.93 -0.32 0.21 16 27 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.46 6.16 -51.93 -0.32 0.14 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.09 1.70 6.05 -51.92 -0.31 1.38 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.60 7.40 -51.93 -0.38 0.21 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.09 6.36 -51.93 -0.33 0.76 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 1.14 4.27 -51.93 -0.22 0.91 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -29.97 334.78 -9.39 -39.36 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -8.08 Total: -2.26 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.64 Total: -16.92 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.29 Total: -36.71 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.41 Total: -5.11 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.97 -9.39 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411399607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.143 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds