Wall clock time and date at job start Mon Mar 30 2020 22:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47100 * 2 1 4 4 C 1.53007 * 109.47113 * 240.00653 * 2 1 3 5 5 C 1.50702 * 109.47235 * 64.75798 * 4 2 1 6 6 H 1.08005 * 119.99827 * 0.72439 * 5 4 2 7 7 C 1.37873 * 120.00067 * 181.00422 * 5 4 2 8 8 N 1.31520 * 119.99964 * 359.71909 * 7 5 4 9 9 Si 1.86796 * 120.00033 * 179.72579 * 7 5 4 10 10 H 1.48498 * 109.47414 * 89.99653 * 9 7 5 11 11 H 1.48497 * 109.46942 * 209.99788 * 9 7 5 12 12 H 1.48504 * 109.47201 * 329.99741 * 9 7 5 13 13 N 1.46892 * 109.47426 * 120.00488 * 2 1 3 14 14 C 1.46851 * 111.00131 * 183.95820 * 13 2 1 15 15 C 1.53038 * 109.52420 * 185.84179 * 14 13 2 16 16 C 1.53120 * 109.27400 * 300.81269 * 15 14 13 17 17 C 1.53126 * 109.15814 * 57.66188 * 16 15 14 18 18 H 1.08990 * 109.50607 * 62.32184 * 17 16 15 19 19 C 1.53003 * 109.50121 * 182.40261 * 17 16 15 20 20 H 1.09004 * 110.43684 * 58.90518 * 19 17 16 21 21 C 1.54813 * 110.48820 * 296.21638 * 19 17 16 22 22 C 1.54992 * 102.09289 * 220.44492 * 21 19 17 23 23 O 1.44386 * 103.48809 * 37.02431 * 22 21 19 24 24 C 1.43739 * 106.97463 * 319.93719 * 23 22 21 25 25 C 1.46851 * 110.99935 * 308.16312 * 13 2 1 26 26 H 1.08999 * 109.47089 * 299.99123 * 1 2 3 27 27 H 1.08997 * 109.47602 * 59.99724 * 1 2 3 28 28 H 1.09003 * 109.46625 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46563 * 304.75879 * 4 2 1 30 30 H 1.08997 * 109.47170 * 184.75763 * 4 2 1 31 31 H 0.96996 * 119.99927 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.45957 * 305.85379 * 14 13 2 33 33 H 1.08994 * 109.46498 * 65.82054 * 14 13 2 34 34 H 1.09000 * 109.50656 * 60.75563 * 15 14 13 35 35 H 1.09007 * 109.50382 * 180.88026 * 15 14 13 36 36 H 1.09005 * 109.51955 * 177.55664 * 16 15 14 37 37 H 1.08990 * 109.52746 * 297.68886 * 16 15 14 38 38 H 1.09005 * 110.90436 * 338.64140 * 21 19 17 39 39 H 1.08997 * 110.90514 * 102.24590 * 21 19 17 40 40 H 1.08992 * 110.61693 * 278.52501 * 22 21 19 41 41 H 1.08997 * 110.75263 * 155.58693 * 22 21 19 42 42 H 1.09003 * 109.88242 * 267.09216 * 24 23 22 43 43 H 1.09003 * 110.00187 * 146.00975 * 24 23 22 44 44 H 1.08998 * 109.46383 * 294.17535 * 25 13 2 45 45 H 1.08994 * 109.45794 * 54.14780 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6362 0.0542 -2.4770 6 1 1.0823 0.9758 -2.3756 7 6 1.9688 -0.4160 -3.7296 8 7 2.6433 -1.5383 -3.8531 9 14 1.4616 0.5411 -5.2515 10 1 2.5289 1.5113 -5.6046 11 1 1.2543 -0.3997 -6.3816 12 1 0.1985 1.2725 -4.9782 13 7 2.0197 -0.6925 1.1993 14 6 3.4846 -0.6307 1.2814 15 6 3.9673 -1.4821 2.4579 16 6 3.3422 -0.9557 3.7528 17 6 1.8168 -0.9854 3.6229 18 1 1.4830 -2.0142 3.4882 19 6 1.1848 -0.4050 4.8896 20 1 1.5229 0.6190 5.0488 21 6 1.5221 -1.2869 6.1165 22 6 0.1798 -1.2922 6.8914 23 8 -0.8135 -1.3286 5.8442 24 6 -0.3526 -0.4574 4.7980 25 6 1.3964 -0.1484 2.4126 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6087 -1.7212 -1.2930 30 1 3.1266 -0.7956 -1.2078 31 1 2.8770 -1.8693 -4.7343 32 1 3.9166 -1.0118 0.3560 33 1 3.7968 0.4031 1.4291 34 1 3.6673 -2.5187 2.3042 35 1 5.0535 -1.4235 2.5282 36 1 3.6489 -1.5858 4.5877 37 1 3.6740 0.0677 3.9277 38 1 1.7965 -2.2954 5.8069 39 1 2.3144 -0.8357 6.7138 40 1 0.0768 -0.3850 7.4867 41 1 0.1028 -2.1761 7.5245 42 1 -0.7664 0.5412 4.9380 43 1 -0.6528 -0.8500 3.8265 44 1 1.7184 0.8831 2.5549 45 1 0.3119 -0.1792 2.3087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411399607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:10:01 Heat of formation + Delta-G solvation = -83.092141 kcal Electronic energy + Delta-G solvation = -21474.416934 eV Core-core repulsion = 18489.943204 eV Total energy + Delta-G solvation = -2984.473731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.04690 -39.61125 -36.69913 -34.76826 -33.73821 -31.75091 -31.00077 -29.36320 -28.47092 -26.15021 -24.58196 -24.21149 -22.75961 -21.62538 -20.66432 -20.59057 -18.69521 -17.45854 -17.13051 -16.60345 -16.47827 -15.95591 -15.82336 -15.49251 -14.82068 -14.56956 -14.50421 -14.32034 -14.09915 -13.88900 -13.48617 -13.35482 -12.98578 -12.79907 -12.68171 -12.47186 -12.43207 -12.19385 -12.13502 -11.99936 -11.90049 -11.62593 -11.47704 -11.34591 -11.26194 -10.89093 -10.83386 -10.54879 -10.48684 -9.10278 -8.18090 -6.27900 1.39625 1.40868 1.51819 2.40583 3.02264 3.09090 3.15309 3.53119 3.77160 3.90074 4.05714 4.08602 4.18553 4.27777 4.31807 4.34117 4.42325 4.47787 4.56015 4.59533 4.65604 4.68926 4.79841 4.87340 4.88719 4.89746 4.95873 5.03682 5.04771 5.09578 5.13900 5.19485 5.25135 5.32064 5.32997 5.42230 5.49764 5.54984 5.72896 5.80558 6.00105 6.15572 6.41161 6.42882 6.88358 7.40256 8.94160 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.004042 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.709258 B = 6926.044794 C = 7493.578072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.096 3.904 3 H 0.017 0.983 4 C 0.044 3.956 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.262 1.262 13 N -0.544 5.544 14 C 0.053 3.947 15 C -0.110 4.110 16 C -0.105 4.105 17 C -0.067 4.067 18 H 0.065 0.935 19 C -0.108 4.108 20 H 0.094 0.906 21 C -0.142 4.142 22 C 0.039 3.961 23 O -0.407 6.407 24 C 0.044 3.956 25 C 0.054 3.946 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.046 0.954 29 H -0.011 1.011 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.029 0.971 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 3.110 21.779 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 H 0.035 0.965 4 C 0.007 3.993 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.186 1.186 13 N -0.269 5.269 14 C -0.075 4.075 15 C -0.148 4.148 16 C -0.142 4.142 17 C -0.085 4.085 18 H 0.084 0.916 19 C -0.127 4.127 20 H 0.112 0.888 21 C -0.180 4.180 22 C -0.037 4.037 23 O -0.327 6.327 24 C -0.032 4.032 25 C -0.074 4.074 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.047 0.953 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.190 2.392 21.613 21.778 hybrid contribution 0.359 1.102 -1.441 1.850 sum -0.831 3.494 20.172 20.490 Atomic orbital electron populations 1.21732 0.94011 1.01374 1.01162 1.21519 0.95867 0.93980 0.89854 0.96480 1.18949 0.94363 0.94548 0.91473 1.21600 1.35343 1.08199 0.92012 0.92131 1.25930 0.95191 0.95986 1.02585 1.70117 1.40564 1.22382 1.24256 0.85491 0.79030 0.78332 0.78463 1.19910 1.20883 1.18646 1.61931 1.06175 1.56593 1.02241 1.22092 0.88038 0.98082 0.99268 1.21557 1.00274 0.99214 0.93773 1.21589 0.93885 1.01682 0.97072 1.21151 0.95922 0.99205 0.92266 0.91610 1.22522 0.94437 1.00933 0.94857 0.88806 1.23184 0.98397 1.00771 0.95636 1.23755 0.86451 1.02925 0.90543 1.88848 1.46273 1.67359 1.30222 1.23369 0.93988 0.94396 0.91494 1.22326 0.99763 0.95890 0.89373 0.91457 0.92804 0.93476 0.99260 0.99054 0.92909 0.93137 0.95697 0.92293 0.90273 0.89824 0.91626 0.90618 0.88141 0.91100 0.88080 0.91623 0.90547 0.95322 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.50 71.98 0.61 -4.21 16 2 C 0.10 4.11 2.10 44.92 0.09 4.20 16 3 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 4 C 0.04 2.39 4.45 29.85 0.13 2.52 16 5 C -0.53 -30.54 8.39 25.60 0.21 -30.32 16 6 H 0.06 3.32 7.07 -2.91 -0.02 3.30 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.54 -20.00 4.52 -871.10 -3.94 -23.94 16 14 C 0.05 1.85 5.28 86.33 0.46 2.31 16 15 C -0.11 -2.91 6.09 30.65 0.19 -2.72 16 16 C -0.10 -2.15 5.06 30.68 0.16 -2.00 16 17 C -0.07 -1.50 1.66 -10.74 -0.02 -1.52 16 18 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 19 C -0.11 -1.90 2.61 -9.80 -0.03 -1.93 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.14 -2.01 5.80 31.89 0.18 -1.82 16 22 C 0.04 0.60 7.72 72.66 0.56 1.16 16 23 O -0.41 -9.42 11.52 -148.98 -1.72 -11.13 16 24 C 0.04 0.90 6.91 72.35 0.50 1.40 16 25 C 0.05 1.52 4.07 86.33 0.35 1.87 16 26 H 0.07 2.10 6.19 -2.39 -0.01 2.09 16 27 H 0.05 2.18 6.95 -2.39 -0.02 2.17 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H -0.01 -0.51 6.16 -2.39 -0.01 -0.53 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.05 2.10 6.05 -2.38 -0.01 2.09 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.08 1.37 7.40 -2.38 -0.02 1.35 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.16 7.75 -2.38 -0.02 1.15 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.76 6.36 -2.39 -0.02 1.75 16 44 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 2.21 4.27 -2.39 -0.01 2.20 16 Total: -1.00 -66.83 334.78 1.46 -65.37 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.94 Total: 10.89 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 3.87 Total: -30.54 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -3.66 Total: -81.34 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.72 Total: -11.13 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -66.83 1.46 -65.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411399607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.724 kcal (2) G-P(sol) polarization free energy of solvation -66.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds