Wall clock time and date at job start Mon Mar 30 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46965 * 2 1 4 4 C 1.50695 * 109.47343 * 239.99782 * 2 1 3 5 5 H 1.08005 * 119.99959 * 275.21613 * 4 2 1 6 6 C 1.37870 * 120.00090 * 95.20803 * 4 2 1 7 7 N 1.31515 * 120.00012 * 174.91341 * 6 4 2 8 8 Si 1.86807 * 120.00210 * 354.91868 * 6 4 2 9 9 H 1.48500 * 109.47066 * 94.84949 * 8 6 4 10 10 H 1.48504 * 109.47151 * 214.85301 * 8 6 4 11 11 H 1.48497 * 109.46555 * 334.84970 * 8 6 4 12 12 C 1.50698 * 109.46995 * 119.99648 * 2 1 3 13 13 O 1.21283 * 119.99942 * 120.27707 * 12 2 1 14 14 N 1.34775 * 120.00160 * 300.00073 * 12 2 1 15 15 C 1.46503 * 120.00162 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47095 * 180.02562 * 15 14 12 17 17 C 1.53000 * 108.85392 * 60.00244 * 16 15 14 18 18 C 1.54064 * 108.87432 * 301.43939 * 16 15 14 19 19 C 1.54005 * 112.85325 * 197.40964 * 18 16 15 20 20 C 1.50479 * 112.54452 * 318.44389 * 19 18 16 21 21 C 1.54238 * 108.52517 * 94.07150 * 20 19 18 22 22 C 1.45542 * 112.40229 * 280.01343 * 21 20 19 23 23 C 1.50474 * 108.87448 * 178.56069 * 16 15 14 24 24 H 1.08993 * 109.46930 * 65.01784 * 1 2 3 25 25 H 1.09003 * 109.46878 * 185.01690 * 1 2 3 26 26 H 1.08995 * 109.46922 * 305.01833 * 1 2 3 27 27 H 0.97011 * 119.99638 * 180.02562 * 7 6 4 28 28 H 0.97002 * 120.00322 * 0.02562 * 14 12 2 29 29 H 1.09000 * 109.47092 * 300.00388 * 15 14 12 30 30 H 1.08999 * 109.46864 * 60.00423 * 15 14 12 31 31 H 1.09000 * 109.47159 * 46.02179 * 17 16 15 32 32 H 1.08994 * 109.46958 * 166.02638 * 17 16 15 33 33 H 1.08997 * 109.46848 * 286.02603 * 17 16 15 34 34 H 1.08999 * 108.81541 * 318.36727 * 18 16 15 35 35 H 1.08999 * 108.81532 * 76.64926 * 18 16 15 36 36 H 1.08999 * 108.91316 * 197.61187 * 19 18 16 37 37 H 1.08999 * 108.71356 * 79.13642 * 19 18 16 38 38 H 1.08998 * 109.63103 * 334.35415 * 20 19 18 39 39 H 1.08999 * 109.62479 * 213.77613 * 20 19 18 40 40 H 1.09003 * 108.89700 * 159.26722 * 21 20 19 41 41 H 1.08994 * 108.90333 * 40.77362 * 21 20 19 42 42 H 1.08992 * 108.90042 * 301.19282 * 22 21 20 43 43 H 1.08998 * 108.89748 * 182.69243 * 22 21 20 44 44 H 1.09004 * 109.62988 * 334.64440 * 23 16 15 45 45 H 1.08998 * 109.62754 * 95.22537 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1323 -1.7858 -1.2301 6 6 2.3644 0.0124 -2.3565 7 7 2.8966 -0.5950 -3.3945 8 14 2.0586 1.8545 -2.4079 9 1 3.2959 2.5730 -2.0105 10 1 1.6748 2.2543 -3.7856 11 1 0.9618 2.2004 -1.4684 12 6 2.0324 -0.7103 1.2305 13 8 2.7338 -1.6935 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.1946 -0.9407 3.6508 16 6 1.6841 -0.2197 4.9000 17 6 0.1542 -0.2279 4.8852 18 6 2.1752 1.2403 4.8684 19 6 2.0923 1.9291 6.2434 20 6 0.8224 1.5973 6.9793 21 6 1.0956 0.4005 7.9132 22 6 1.0722 -0.8714 7.2061 23 6 2.1632 -0.9600 6.1193 24 1 -0.3633 0.4340 -0.9315 25 1 -0.3633 -1.0238 0.0899 26 1 -0.3633 0.5897 0.8416 27 1 3.1305 -0.0863 -4.1868 28 1 1.1488 0.5386 2.5436 29 1 1.8309 -1.9682 3.6507 30 1 3.2846 -0.9411 3.6510 31 1 -0.2013 -1.2270 4.6333 32 1 -0.2201 0.0537 5.8693 33 1 -0.2057 0.4838 4.1422 34 1 3.2106 1.2556 4.5283 35 1 1.5661 1.8008 4.1592 36 1 2.1460 3.0085 6.1016 37 1 2.9427 1.6102 6.8461 38 1 0.0431 1.3334 6.2643 39 1 0.5059 2.4573 7.5694 40 1 0.3371 0.3832 8.6958 41 1 2.0742 0.5295 8.3754 42 1 0.0963 -0.9970 6.7375 43 1 1.2233 -1.6773 7.9242 44 1 2.3437 -2.0047 5.8659 45 1 3.0832 -0.5049 6.4860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597480708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:09:38 Heat of formation + Delta-G solvation = -43.234318 kcal Electronic energy + Delta-G solvation = -21661.546620 eV Core-core repulsion = 18678.801254 eV Total energy + Delta-G solvation = -2982.745366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59533 -38.56503 -35.06458 -33.59557 -32.60563 -32.17746 -31.02594 -28.15008 -26.39323 -25.19336 -25.08434 -22.96250 -21.74657 -20.25251 -19.28650 -18.18403 -16.97978 -16.59445 -15.89850 -15.45483 -14.91331 -14.84959 -14.40514 -14.06989 -13.92851 -13.31537 -13.18564 -12.81119 -12.70048 -12.58998 -12.41355 -12.21170 -12.09900 -11.80084 -11.37514 -11.31832 -11.10662 -10.88500 -10.69354 -10.63407 -10.47766 -10.39534 -10.30116 -10.20791 -9.79221 -9.72483 -9.12542 -8.59274 -8.50782 -8.37690 -6.03021 -4.01560 3.26018 3.34052 3.35873 3.74176 3.95208 4.41445 4.43309 4.47803 4.58168 4.89092 4.89356 4.95668 5.09026 5.15284 5.19764 5.28675 5.46690 5.51689 5.59880 5.69598 5.76276 5.81139 5.84917 5.91995 5.94059 6.00370 6.06122 6.08050 6.09344 6.14996 6.16869 6.18253 6.25320 6.37679 6.42541 6.46833 6.56823 6.87754 7.12803 7.21553 7.61038 8.25632 8.59857 9.13133 9.26549 9.57168 11.10408 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033160 B = 0.004430 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.196830 B = 6318.771520 C = 6641.568600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 H 0.053 0.947 4 C -0.494 4.494 5 H 0.084 0.916 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.870 3.130 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.261 1.261 12 C 0.517 3.483 13 O -0.532 6.532 14 N -0.746 5.746 15 C 0.129 3.871 16 C -0.066 4.066 17 C -0.172 4.172 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.140 4.140 21 C -0.115 4.115 22 C -0.138 4.138 23 C -0.104 4.104 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.025 0.975 27 H 0.263 0.737 28 H 0.392 0.608 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 5.798 22.849 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 H 0.071 0.929 4 C -0.532 4.532 5 H 0.102 0.898 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.697 3.303 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.186 1.186 12 C 0.306 3.694 13 O -0.406 6.406 14 N -0.402 5.402 15 C 0.005 3.995 16 C -0.066 4.066 17 C -0.228 4.228 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.177 4.177 21 C -0.152 4.152 22 C -0.175 4.175 23 C -0.142 4.142 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.226 0.774 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.335 5.078 22.543 23.716 hybrid contribution -0.218 1.394 -0.146 1.419 sum -5.553 6.472 22.397 23.966 Atomic orbital electron populations 1.21962 0.97038 1.00405 0.99718 1.19314 0.93801 0.96945 0.92591 0.92919 1.20746 1.42586 0.96163 0.93698 0.89755 1.25023 0.94422 0.97932 0.95751 1.69911 1.41949 1.36167 1.05313 0.86976 0.79121 0.86553 0.77680 1.20404 1.21184 1.18564 1.21675 0.79134 0.84549 0.84085 1.90580 1.36830 1.26586 1.86621 1.46357 1.55499 1.32626 1.05671 1.21441 0.98745 0.95702 0.83620 1.20465 0.96172 0.95179 0.94808 1.22803 0.94928 1.02167 1.02899 1.22011 1.01623 0.94125 0.96845 1.21281 0.97973 0.99690 0.96280 1.21799 0.99208 0.97627 0.99096 1.20463 1.01547 0.95125 0.98110 1.20783 1.01038 0.97532 0.98115 1.21310 0.98485 1.00246 0.94162 0.92538 0.93299 0.95617 0.92653 0.77360 0.92212 0.92312 0.92489 0.89005 0.92846 0.91855 0.92088 0.92529 0.92321 0.89336 0.92473 0.92728 0.92516 0.89909 0.92647 0.91496 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.74 37.16 0.32 -2.36 16 2 C 0.00 -0.11 2.18 -92.92 -0.20 -0.31 16 3 H 0.05 1.21 5.59 -51.93 -0.29 0.92 16 4 C -0.49 -14.42 8.35 -34.45 -0.29 -14.71 16 5 H 0.08 2.80 7.62 -52.48 -0.40 2.40 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 8 Si 0.87 21.03 26.57 -169.99 -4.52 16.52 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.26 -5.78 6.20 56.52 0.35 -5.43 16 12 C 0.52 11.67 7.15 -10.99 -0.08 11.59 16 13 O -0.53 -14.32 15.77 5.55 0.09 -14.23 16 14 N -0.75 -12.46 4.92 -60.29 -0.30 -12.75 16 15 C 0.13 1.87 4.13 -4.04 -0.02 1.85 16 16 C -0.07 -0.69 0.51 -155.21 -0.08 -0.76 16 17 C -0.17 -1.64 5.94 37.16 0.22 -1.42 16 18 C -0.11 -1.09 4.37 -25.65 -0.11 -1.21 16 19 C -0.11 -0.97 5.31 -27.47 -0.15 -1.12 16 20 C -0.14 -1.07 5.56 -27.34 -0.15 -1.22 16 21 C -0.11 -0.84 5.21 -29.60 -0.15 -1.00 16 22 C -0.14 -1.08 5.14 -29.60 -0.15 -1.23 16 23 C -0.10 -0.97 5.02 -27.34 -0.14 -1.10 16 24 H 0.06 1.16 7.32 -51.93 -0.38 0.78 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.02 0.41 7.71 -51.93 -0.40 0.01 16 27 H 0.26 7.65 8.31 -40.81 -0.34 7.31 16 28 H 0.39 5.57 5.93 -40.82 -0.24 5.33 16 29 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 30 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 32 H 0.09 0.74 2.67 -51.93 -0.14 0.60 16 33 H 0.05 0.52 6.88 -51.93 -0.36 0.16 16 34 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 35 H 0.06 0.62 6.87 -51.93 -0.36 0.26 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.50 6.63 -51.93 -0.34 0.15 16 38 H 0.09 0.68 4.25 -51.93 -0.22 0.46 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.42 7.47 -51.93 -0.39 0.04 16 42 H 0.08 0.64 4.83 -51.93 -0.25 0.39 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 45 H 0.07 0.61 6.97 -51.93 -0.36 0.25 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -33.09 324.30 -7.63 -40.73 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.50 Total: 3.12 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.07 Total: -11.04 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.48 Total: -39.97 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.52 Total: 16.52 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.09 -7.63 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597480708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.508 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds