Wall clock time and date at job start Mon Mar 30 2020 22:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46965 * 2 1 4 4 C 1.50695 * 109.47343 * 239.99782 * 2 1 3 5 5 H 1.08005 * 119.99959 * 275.21613 * 4 2 1 6 6 C 1.37870 * 120.00090 * 95.20803 * 4 2 1 7 7 N 1.31515 * 120.00012 * 174.91341 * 6 4 2 8 8 Si 1.86807 * 120.00210 * 354.91868 * 6 4 2 9 9 H 1.48500 * 109.47066 * 94.84949 * 8 6 4 10 10 H 1.48504 * 109.47151 * 214.85301 * 8 6 4 11 11 H 1.48497 * 109.46555 * 334.84970 * 8 6 4 12 12 C 1.50698 * 109.46995 * 119.99648 * 2 1 3 13 13 O 1.21283 * 119.99942 * 120.27707 * 12 2 1 14 14 N 1.34775 * 120.00160 * 300.00073 * 12 2 1 15 15 C 1.46503 * 120.00162 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47095 * 180.02562 * 15 14 12 17 17 C 1.53000 * 108.85392 * 60.00244 * 16 15 14 18 18 C 1.54064 * 108.87432 * 301.43939 * 16 15 14 19 19 C 1.54005 * 112.85325 * 197.40964 * 18 16 15 20 20 C 1.50479 * 112.54452 * 318.44389 * 19 18 16 21 21 C 1.54238 * 108.52517 * 94.07150 * 20 19 18 22 22 C 1.45542 * 112.40229 * 280.01343 * 21 20 19 23 23 C 1.50474 * 108.87448 * 178.56069 * 16 15 14 24 24 H 1.08993 * 109.46930 * 65.01784 * 1 2 3 25 25 H 1.09003 * 109.46878 * 185.01690 * 1 2 3 26 26 H 1.08995 * 109.46922 * 305.01833 * 1 2 3 27 27 H 0.97011 * 119.99638 * 180.02562 * 7 6 4 28 28 H 0.97002 * 120.00322 * 0.02562 * 14 12 2 29 29 H 1.09000 * 109.47092 * 300.00388 * 15 14 12 30 30 H 1.08999 * 109.46864 * 60.00423 * 15 14 12 31 31 H 1.09000 * 109.47159 * 46.02179 * 17 16 15 32 32 H 1.08994 * 109.46958 * 166.02638 * 17 16 15 33 33 H 1.08997 * 109.46848 * 286.02603 * 17 16 15 34 34 H 1.08999 * 108.81541 * 318.36727 * 18 16 15 35 35 H 1.08999 * 108.81532 * 76.64926 * 18 16 15 36 36 H 1.08999 * 108.91316 * 197.61187 * 19 18 16 37 37 H 1.08999 * 108.71356 * 79.13642 * 19 18 16 38 38 H 1.08998 * 109.63103 * 334.35415 * 20 19 18 39 39 H 1.08999 * 109.62479 * 213.77613 * 20 19 18 40 40 H 1.09003 * 108.89700 * 159.26722 * 21 20 19 41 41 H 1.08994 * 108.90333 * 40.77362 * 21 20 19 42 42 H 1.08992 * 108.90042 * 301.19282 * 22 21 20 43 43 H 1.08998 * 108.89748 * 182.69243 * 22 21 20 44 44 H 1.09004 * 109.62988 * 334.64440 * 23 16 15 45 45 H 1.08998 * 109.62754 * 95.22537 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1323 -1.7858 -1.2301 6 6 2.3644 0.0124 -2.3565 7 7 2.8966 -0.5950 -3.3945 8 14 2.0586 1.8545 -2.4079 9 1 3.2959 2.5730 -2.0105 10 1 1.6748 2.2543 -3.7856 11 1 0.9618 2.2004 -1.4684 12 6 2.0324 -0.7103 1.2305 13 8 2.7338 -1.6935 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.1946 -0.9407 3.6508 16 6 1.6841 -0.2197 4.9000 17 6 0.1542 -0.2279 4.8852 18 6 2.1752 1.2403 4.8684 19 6 2.0923 1.9291 6.2434 20 6 0.8224 1.5973 6.9793 21 6 1.0956 0.4005 7.9132 22 6 1.0722 -0.8714 7.2061 23 6 2.1632 -0.9600 6.1193 24 1 -0.3633 0.4340 -0.9315 25 1 -0.3633 -1.0238 0.0899 26 1 -0.3633 0.5897 0.8416 27 1 3.1305 -0.0863 -4.1868 28 1 1.1488 0.5386 2.5436 29 1 1.8309 -1.9682 3.6507 30 1 3.2846 -0.9411 3.6510 31 1 -0.2013 -1.2270 4.6333 32 1 -0.2201 0.0537 5.8693 33 1 -0.2057 0.4838 4.1422 34 1 3.2106 1.2556 4.5283 35 1 1.5661 1.8008 4.1592 36 1 2.1460 3.0085 6.1016 37 1 2.9427 1.6102 6.8461 38 1 0.0431 1.3334 6.2643 39 1 0.5059 2.4573 7.5694 40 1 0.3371 0.3832 8.6958 41 1 2.0742 0.5295 8.3754 42 1 0.0963 -0.9970 6.7375 43 1 1.2233 -1.6773 7.9242 44 1 2.3437 -2.0047 5.8659 45 1 3.0832 -0.5049 6.4860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597480708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:09:37 Heat of formation + Delta-G solvation = -65.181408 kcal Electronic energy + Delta-G solvation = -21662.498317 eV Core-core repulsion = 18678.801254 eV Total energy + Delta-G solvation = -2983.697063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51473 -40.19461 -36.25778 -35.62601 -33.75988 -33.25310 -32.74678 -28.89616 -27.62943 -27.14818 -25.82982 -24.30389 -23.01380 -21.03013 -20.86087 -19.12368 -19.03971 -17.93513 -17.09604 -16.64049 -16.26339 -16.22521 -15.72808 -15.29776 -14.96285 -14.85566 -14.45896 -14.09009 -13.85856 -13.80360 -13.48863 -13.34246 -13.09713 -13.01475 -12.90515 -12.69487 -12.55262 -12.20024 -12.09005 -11.72657 -11.66500 -11.40487 -11.23353 -11.14805 -11.06448 -11.01233 -10.74499 -10.46149 -10.39616 -9.93345 -8.26806 -6.33370 1.36959 1.39065 1.51583 1.93071 2.36819 2.44590 3.11361 3.63010 3.71249 3.80291 4.12358 4.18939 4.23446 4.29187 4.39007 4.41808 4.43686 4.50501 4.66103 4.73148 4.75170 4.77419 4.87267 4.89396 4.92294 5.05248 5.11776 5.15464 5.17650 5.22704 5.30654 5.38655 5.41249 5.44290 5.46902 5.51921 5.53326 5.58795 5.60289 5.68783 5.77413 6.26483 6.68004 6.88147 7.28261 7.56316 8.91565 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033160 B = 0.004430 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.196830 B = 6318.771520 C = 6641.568600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.009 4.009 3 H 0.071 0.929 4 C -0.508 4.508 5 H 0.018 0.982 6 C 0.003 3.997 7 N -0.954 5.954 8 Si 0.948 3.052 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.217 1.217 12 C 0.515 3.485 13 O -0.590 6.590 14 N -0.718 5.718 15 C 0.128 3.872 16 C -0.053 4.053 17 C -0.173 4.173 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.106 4.106 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.267 0.733 28 H 0.410 0.590 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 9.096 25.486 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.030 4.030 3 H 0.089 0.911 4 C -0.546 4.546 5 H 0.037 0.963 6 C -0.193 4.193 7 N -0.594 5.594 8 Si 0.770 3.230 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.139 1.139 12 C 0.304 3.696 13 O -0.469 6.469 14 N -0.372 5.372 15 C 0.004 3.996 16 C -0.054 4.054 17 C -0.229 4.229 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.176 4.176 21 C -0.152 4.152 22 C -0.170 4.170 23 C -0.144 4.144 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.468 8.403 25.250 27.639 hybrid contribution 0.493 0.232 -0.924 1.073 sum -6.975 8.635 24.326 26.739 Atomic orbital electron populations 1.21843 0.93742 1.00957 1.01932 1.19310 0.96285 0.96901 0.90545 0.91104 1.20898 1.43280 0.93682 0.96779 0.96340 1.26135 0.93706 1.04737 0.94760 1.70109 1.43810 1.39033 1.06446 0.85741 0.80508 0.77985 0.78795 1.19744 1.20952 1.13915 1.21518 0.78621 0.83856 0.85646 1.90565 1.39605 1.29159 1.87565 1.46015 1.54187 1.32489 1.04551 1.21614 0.97919 0.95682 0.84389 1.20397 0.97029 0.95167 0.92795 1.22852 0.93684 1.01923 1.04397 1.22022 1.00701 0.93718 0.98245 1.21248 0.98609 0.99787 0.95158 1.21799 0.98540 0.98124 0.99144 1.20461 1.01944 0.94551 0.98272 1.20756 1.00321 0.98279 0.97647 1.21318 0.99276 0.99524 0.94246 0.92542 0.94316 0.90502 0.92460 0.75267 0.93413 0.93923 0.93289 0.86894 0.92397 0.93388 0.91646 0.91917 0.92459 0.89158 0.91421 0.91525 0.92665 0.89504 0.92100 0.92397 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.74 71.98 0.63 -4.12 16 2 C -0.01 -0.40 2.18 -12.29 -0.03 -0.43 16 3 H 0.07 3.02 5.59 -2.39 -0.01 3.01 16 4 C -0.51 -30.82 8.35 25.60 0.21 -30.61 16 5 H 0.02 1.31 7.62 -2.91 -0.02 1.29 16 6 C 0.00 0.16 5.47 84.65 0.46 0.62 16 7 N -0.95 -62.20 13.96 21.44 0.30 -61.90 16 8 Si 0.95 42.59 26.57 68.60 1.82 44.41 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.22 -8.16 6.20 99.48 0.62 -7.55 16 12 C 0.52 23.37 7.15 87.66 0.63 24.00 16 13 O -0.59 -33.34 15.77 -3.04 -0.05 -33.39 16 14 N -0.72 -22.99 4.92 -463.05 -2.28 -25.26 16 15 C 0.13 3.65 4.13 86.38 0.36 4.01 16 16 C -0.05 -1.01 0.51 -52.64 -0.03 -1.04 16 17 C -0.17 -2.77 5.94 71.98 0.43 -2.34 16 18 C -0.11 -1.93 4.37 31.29 0.14 -1.80 16 19 C -0.11 -1.54 5.31 30.12 0.16 -1.38 16 20 C -0.14 -1.60 5.56 30.20 0.17 -1.43 16 21 C -0.11 -1.30 5.21 28.74 0.15 -1.15 16 22 C -0.13 -1.73 5.14 28.74 0.15 -1.58 16 23 C -0.11 -1.80 5.02 30.20 0.15 -1.65 16 24 H 0.06 2.12 7.32 -2.39 -0.02 2.10 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 2.09 7.71 -2.39 -0.02 2.08 16 27 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 28 H 0.41 10.26 5.93 -92.71 -0.55 9.71 16 29 H 0.05 1.50 8.04 -2.39 -0.02 1.48 16 30 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 31 H 0.05 0.89 8.05 -2.39 -0.02 0.87 16 32 H 0.11 1.38 2.67 -2.39 -0.01 1.38 16 33 H 0.06 0.89 6.88 -2.39 -0.02 0.87 16 34 H 0.05 1.00 7.97 -2.39 -0.02 0.98 16 35 H 0.06 1.10 6.87 -2.39 -0.02 1.08 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.83 6.63 -2.39 -0.02 0.81 16 38 H 0.09 1.01 4.25 -2.39 -0.01 1.00 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.05 0.66 7.47 -2.39 -0.02 0.65 16 42 H 0.09 1.07 4.83 -2.39 -0.01 1.06 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 1.09 7.65 -2.39 -0.02 1.07 16 45 H 0.07 1.13 6.97 -2.39 -0.02 1.12 16 Total: -1.00 -77.94 324.30 3.71 -74.23 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.34 Total: 20.81 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 3.58 Total: -18.90 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.98 Total: -87.17 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.05 Total: -33.39 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.82 Total: 44.41 kcal Total: -77.94 3.71 -74.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597480708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.052 kcal (2) G-P(sol) polarization free energy of solvation -77.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds