Wall clock time and date at job start Mon Mar 30 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47089 * 2 1 4 4 C 1.52999 * 109.47189 * 240.00424 * 2 1 3 5 5 C 1.52998 * 109.47674 * 120.00196 * 2 1 3 6 6 H 1.09005 * 109.49938 * 299.92144 * 5 2 1 7 7 C 1.53203 * 109.52586 * 179.84524 * 5 2 1 8 8 C 1.53123 * 109.11533 * 182.40185 * 7 5 2 9 9 C 1.53039 * 109.31189 * 57.63615 * 8 7 5 10 10 N 1.46856 * 109.51787 * 300.79882 * 9 8 7 11 11 C 1.46902 * 110.99619 * 185.84053 * 10 9 8 12 12 C 1.52998 * 109.47139 * 293.95452 * 11 10 9 13 13 C 1.53002 * 109.47458 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47458 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47111 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99703 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99709 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00346 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47303 * 59.99963 * 19 17 15 21 21 H 1.48498 * 109.47308 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46943 * 299.99855 * 19 17 15 23 23 C 1.46846 * 111.19871 * 61.74404 * 10 9 8 24 24 H 1.09008 * 109.46944 * 299.99516 * 1 2 3 25 25 H 1.08999 * 109.47471 * 59.99926 * 1 2 3 26 26 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47292 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46687 * 300.00678 * 3 2 1 29 29 H 1.08998 * 109.47295 * 60.00136 * 3 2 1 30 30 H 1.09007 * 109.46918 * 299.99464 * 4 2 1 31 31 H 1.08999 * 109.47200 * 59.99484 * 4 2 1 32 32 H 1.09001 * 109.47572 * 179.97438 * 4 2 1 33 33 H 1.08994 * 109.57907 * 62.48976 * 7 5 2 34 34 H 1.08997 * 109.51203 * 302.27240 * 7 5 2 35 35 H 1.09002 * 109.50371 * 297.67165 * 8 7 5 36 36 H 1.09003 * 109.50070 * 177.59325 * 8 7 5 37 37 H 1.09000 * 109.46148 * 60.81334 * 9 8 7 38 38 H 1.09002 * 109.46208 * 180.79044 * 9 8 7 39 39 H 1.09000 * 109.47271 * 53.95314 * 11 10 9 40 40 H 1.09002 * 109.46988 * 173.95490 * 11 10 9 41 41 H 1.09003 * 109.47420 * 300.00138 * 12 11 10 42 42 H 1.09002 * 109.47148 * 60.00137 * 12 11 10 43 43 H 1.09003 * 109.46759 * 300.00349 * 13 12 11 44 44 H 1.09002 * 109.46988 * 59.99844 * 13 12 11 45 45 H 1.09000 * 109.46927 * 299.99879 * 14 13 12 46 46 H 1.09002 * 109.47148 * 59.99943 * 14 13 12 47 47 H 0.96994 * 119.99858 * 180.02562 * 18 17 15 48 48 H 1.09004 * 109.46012 * 58.27074 * 23 10 9 49 49 H 1.08997 * 109.46257 * 178.24394 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6782 -0.2070 2.1395 7 6 3.5721 -0.7253 1.2483 8 6 4.0721 -1.5008 2.4703 9 6 3.5036 -2.9213 2.4356 10 7 2.0362 -2.8627 2.4385 11 6 1.4559 -4.2080 2.5453 12 6 1.7859 -5.0074 1.2832 13 6 1.1810 -6.4084 1.3941 14 6 1.5104 -7.2076 0.1317 15 6 0.9151 -8.5877 0.2413 16 1 0.3572 -8.8667 1.1230 17 6 1.0827 -9.4941 -0.7840 18 7 1.7624 -9.1546 -1.8574 19 14 0.3441 -11.2046 -0.6484 20 1 -1.1297 -11.0973 -0.5018 21 1 0.6650 -11.9808 -1.8731 22 1 0.9106 -11.8958 0.5377 23 6 1.5304 -2.1642 1.2500 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2496 33 1 3.9401 0.2997 1.2919 34 1 3.9344 -1.2050 0.3392 35 1 3.7423 -0.9989 3.3799 36 1 5.1612 -1.5442 2.4531 37 1 3.8452 -3.4272 1.5326 38 1 3.8468 -3.4713 3.3119 39 1 1.8721 -4.7152 3.4158 40 1 0.3741 -4.1295 2.6533 41 1 1.3698 -4.5003 0.4127 42 1 2.8677 -5.0859 1.1753 43 1 1.5967 -6.9158 2.2647 44 1 0.0992 -6.3296 1.5018 45 1 1.0942 -6.7001 -0.7385 46 1 2.5922 -7.2865 0.0236 47 1 1.8800 -9.7922 -2.5788 48 1 1.8812 -2.6738 0.3525 49 1 0.4405 -2.1643 1.2650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708559708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:10:02 Heat of formation + Delta-G solvation = -44.811992 kcal Electronic energy + Delta-G solvation = -21482.879677 eV Core-core repulsion = 18635.898992 eV Total energy + Delta-G solvation = -2846.980684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01468 -37.12883 -34.64610 -33.09064 -31.58112 -29.87084 -28.30512 -27.43960 -27.37725 -25.11207 -23.39924 -23.19633 -21.46714 -20.27141 -19.46150 -18.31667 -16.22529 -15.93069 -15.36371 -14.78907 -14.62667 -14.47442 -14.31107 -14.07247 -13.93568 -13.62897 -13.16055 -12.78049 -12.57647 -12.22838 -12.00349 -11.92198 -11.88541 -11.68675 -11.60311 -11.51800 -11.16477 -11.06174 -10.90085 -10.78628 -10.55728 -10.48112 -10.41348 -10.27081 -10.06853 -10.00932 -9.60109 -9.36807 -9.06455 -8.32410 -7.96598 -5.97458 -3.99881 3.34369 3.38443 3.41163 4.05074 4.47663 4.56657 4.65660 4.70306 4.97103 5.05469 5.07083 5.25512 5.37774 5.39307 5.42968 5.47374 5.54212 5.54493 5.56780 5.60144 5.67814 5.74913 5.78260 5.83582 5.88508 5.91763 5.92591 5.95438 6.00225 6.03823 6.09423 6.14957 6.21718 6.23433 6.32789 6.38887 6.46471 6.55884 6.78278 6.94615 7.16539 7.28212 7.29624 7.70473 7.86201 8.03122 8.46341 9.07424 9.64014 11.13827 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.003556 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.664074 B = 7872.528921 C = 8337.757510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.071 4.071 6 H 0.074 0.926 7 C -0.119 4.119 8 C -0.116 4.116 9 C 0.051 3.949 10 N -0.539 5.539 11 C 0.054 3.946 12 C -0.153 4.153 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.054 3.946 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.044 0.956 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 21.091 5.858 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.205 4.205 5 C -0.090 4.090 6 H 0.092 0.908 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.077 4.077 10 N -0.262 5.262 11 C -0.073 4.073 12 C -0.192 4.192 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.014 21.296 6.112 22.247 hybrid contribution -0.120 -1.546 -0.798 1.744 sum 1.894 19.750 5.314 20.540 Atomic orbital electron populations 1.21930 0.94656 1.02133 1.01406 1.20523 0.95520 0.95189 0.95198 1.21903 1.01069 0.95426 1.01388 1.22015 1.01148 1.00738 0.96630 1.21192 0.95091 0.95399 0.97293 0.90759 1.21764 0.95489 1.00056 0.98363 1.21582 0.99362 0.95683 0.98740 1.22090 0.88084 0.96620 1.00910 1.62207 1.06559 1.17905 1.39483 1.22278 0.99835 0.87133 0.98088 1.22271 1.00948 0.98063 0.97954 1.21547 0.99034 0.93087 1.00789 1.19084 0.96641 0.94066 0.91740 1.21259 1.33694 0.97940 1.03011 0.92789 1.25033 0.95386 0.98660 0.95423 1.69957 1.41004 1.35471 1.07196 0.86668 0.79674 0.84387 0.77334 1.20235 1.21295 1.20250 1.22266 0.99811 0.93490 0.91840 0.92755 0.92902 0.92174 0.92485 0.92939 0.92843 0.92088 0.92957 0.92444 0.91922 0.91857 0.91509 0.91926 0.94404 0.91102 0.91050 0.91006 0.92473 0.92616 0.93517 0.93495 0.96883 0.96897 0.93008 0.93773 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.12 37.15 0.30 -1.03 16 2 C -0.06 -0.60 0.57 -154.51 -0.09 -0.69 16 3 C -0.14 -1.14 8.13 37.16 0.30 -0.84 16 4 C -0.15 -1.49 7.77 37.16 0.29 -1.20 16 5 C -0.07 -0.74 1.71 -90.50 -0.15 -0.89 16 6 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.12 -1.19 4.57 -26.56 -0.12 -1.31 16 8 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 9 C 0.05 0.64 5.05 -3.83 -0.02 0.62 16 10 N -0.54 -7.15 4.86 -234.66 -1.14 -8.29 16 11 C 0.05 0.79 5.36 -3.82 -0.02 0.77 16 12 C -0.15 -2.67 4.52 -26.73 -0.12 -2.79 16 13 C -0.11 -2.24 5.15 -26.73 -0.14 -2.37 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 19 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.05 0.67 3.41 -3.84 -0.01 0.65 16 24 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.61 6.45 -51.93 -0.33 0.27 16 27 H 0.06 0.45 6.50 -51.93 -0.34 0.11 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.70 6.41 -51.93 -0.33 0.36 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.57 6.38 -51.93 -0.33 0.23 16 33 H 0.06 0.55 6.58 -51.93 -0.34 0.21 16 34 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.04 0.52 6.76 -51.93 -0.35 0.17 16 38 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 39 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.02 6.51 -51.93 -0.34 0.68 16 42 H 0.06 1.00 6.68 -51.93 -0.35 0.65 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.04 0.61 4.85 -51.93 -0.25 0.36 16 49 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -29.90 356.92 -10.05 -39.95 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -9.50 Total: -3.35 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -0.50 Total: -23.92 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.40 Total: -35.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.90 -10.05 -39.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708559708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.862 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds