Wall clock time and date at job start Mon Mar 30 2020 22:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 110.30156 * 2 1 4 4 N 1.29948 * 126.28414 * 242.84964 * 3 2 1 5 5 O 1.21303 * 110.25380 * 179.68546 * 4 3 2 6 6 C 1.33646 * 109.80371 * 0.46615 * 5 4 3 7 7 C 1.50701 * 126.54427 * 179.80205 * 6 5 4 8 8 C 1.53002 * 109.47324 * 269.68532 * 7 6 5 9 9 C 1.50696 * 109.46997 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 N 1.31127 * 106.90268 * 359.53978 * 6 5 4 18 18 C 1.53701 * 110.34544 * 237.82344 * 2 1 3 19 19 C 1.52944 * 112.49135 * 238.19989 * 18 2 1 20 20 C 1.55154 * 108.95951 * 30.09830 * 19 18 2 21 21 S 1.83394 * 110.42650 * 122.22407 * 2 1 3 22 22 H 1.08998 * 109.46453 * 60.70962 * 1 2 3 23 23 H 1.09000 * 109.47048 * 180.70064 * 1 2 3 24 24 H 1.08995 * 109.47343 * 300.70353 * 1 2 3 25 25 H 1.09005 * 109.46911 * 149.68973 * 7 6 5 26 26 H 1.09002 * 109.47591 * 29.68932 * 7 6 5 27 27 H 1.09005 * 109.46767 * 60.00353 * 8 7 6 28 28 H 1.09002 * 109.47113 * 300.00693 * 8 7 6 29 29 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 30 30 H 1.09007 * 108.88844 * 358.99219 * 18 2 1 31 31 H 1.08994 * 108.88987 * 117.54552 * 18 2 1 32 32 H 1.09004 * 109.60380 * 150.02994 * 19 18 2 33 33 H 1.09004 * 109.59889 * 270.35046 * 19 18 2 34 34 H 1.08997 * 111.12849 * 76.47709 * 20 19 18 35 35 H 1.09006 * 111.12649 * 200.65072 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0529 1.4134 0.0000 4 7 2.7680 1.9688 -0.9321 5 8 3.0240 3.1172 -0.6369 6 6 2.4884 3.4091 0.5522 7 6 2.5785 4.7269 1.2778 8 6 3.8128 4.7280 2.1820 9 6 3.9024 6.0455 2.9079 10 1 3.1538 6.8059 2.7415 11 6 4.9404 6.2802 3.7847 12 7 5.0184 7.4298 4.4187 13 14 6.2357 4.9652 4.0721 14 1 5.8130 4.0912 5.1957 15 1 6.3934 4.1485 2.8419 16 1 7.5304 5.6108 4.4071 17 7 1.8647 2.3318 0.9644 18 6 2.0644 -0.7674 -1.2198 19 6 2.9660 -1.9382 -0.8254 20 6 2.5090 -2.4844 0.5530 21 16 2.1701 -0.9164 1.4539 22 1 -0.3632 0.5028 -0.8963 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3634 0.5247 0.8836 25 1 1.6839 4.8698 1.8840 26 1 2.6588 5.5365 0.5523 27 1 4.7073 4.5851 1.5757 28 1 3.7324 3.9184 2.9074 29 1 5.7484 7.5947 5.0358 30 1 1.2202 -1.1499 -1.7936 31 1 2.6343 -0.0814 -1.8464 32 1 2.8905 -2.7265 -1.5745 33 1 3.9990 -1.5971 -0.7564 34 1 1.6050 -3.0859 0.4572 35 1 3.3060 -3.0504 1.0353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382354607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:09:39 Heat of formation + Delta-G solvation = 53.756449 kcal Electronic energy + Delta-G solvation = -18096.636317 eV Core-core repulsion = 15223.757558 eV Total energy + Delta-G solvation = -2872.878760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.30323 -37.65503 -35.51601 -34.43163 -32.68186 -31.73151 -30.44307 -27.26994 -26.16377 -24.85553 -22.99191 -22.41123 -21.00612 -19.81166 -17.79698 -17.73727 -16.81891 -16.37466 -15.67891 -14.96406 -14.36762 -14.15687 -14.06763 -13.79061 -13.42809 -13.07656 -12.89878 -12.74810 -12.32995 -11.90387 -11.85430 -11.77691 -11.45775 -11.19065 -11.07576 -11.03181 -10.76385 -10.49195 -10.20305 -10.00352 -9.88362 -9.40668 -9.35911 -8.61160 -7.88953 -6.12259 -4.12762 1.18605 1.64583 2.04148 2.63419 3.17160 3.29820 3.37011 3.41301 3.52822 3.95527 4.33251 4.39899 4.40239 4.70707 4.71077 4.83935 5.15749 5.21942 5.24551 5.27062 5.37529 5.48860 5.50531 5.72261 5.74079 5.84193 5.88694 5.98299 6.04622 6.27516 6.45111 7.04574 7.16293 7.62798 8.39506 8.42071 8.89651 9.48673 11.00316 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.004775 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.837162 B = 5862.658591 C = 6328.226451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.080 3.920 3 C 0.183 3.817 4 N -0.389 5.389 5 O 0.071 5.929 6 C 0.213 3.787 7 C -0.019 4.019 8 C -0.007 4.007 9 C -0.525 4.525 10 H 0.078 0.922 11 C 0.074 3.926 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.275 1.275 15 H -0.266 1.266 16 H -0.285 1.285 17 N -0.483 5.483 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.083 4.083 21 S -0.237 6.237 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.265 0.735 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -18.656 -11.730 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.032 4.032 3 C -0.091 4.091 4 N -0.100 5.100 5 O 0.015 5.985 6 C -0.007 4.007 7 C -0.058 4.058 8 C -0.046 4.046 9 C -0.563 4.563 10 H 0.096 0.904 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.200 1.200 15 H -0.190 1.190 16 H -0.211 1.211 17 N -0.216 5.216 18 C -0.169 4.169 19 C -0.162 4.162 20 C -0.231 4.231 21 S -0.009 6.009 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.973 -18.900 -10.866 22.888 hybrid contribution 0.710 -0.745 -0.787 1.296 sum -6.263 -19.645 -11.653 23.684 Atomic orbital electron populations 1.22007 0.89807 1.03234 1.03573 1.21201 0.98678 0.87692 0.95611 1.24842 0.97963 0.97905 0.88438 1.74459 1.18456 0.93156 1.23942 1.85277 1.57388 1.21990 1.33894 1.29675 0.88463 0.99120 0.83397 1.20558 1.03814 0.84042 0.97411 1.19623 0.91510 0.99016 0.94455 1.20922 1.11794 0.99067 1.24523 0.90356 1.24932 0.97553 0.95280 0.95099 1.69891 1.32418 1.23141 1.28057 0.86840 0.81364 0.82236 0.79305 1.20038 1.19035 1.21130 1.71894 1.23519 0.99546 1.26599 1.22220 1.00832 0.97320 0.96525 1.22365 1.00806 0.97147 0.95853 1.24444 1.04719 0.96879 0.97063 1.88403 1.84648 1.11662 1.16179 0.91595 0.90728 0.90342 0.87571 0.88414 0.95847 0.95930 0.92486 0.89947 0.88640 0.89707 0.90306 0.88912 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.36 37.16 0.31 -1.07 16 2 C 0.08 1.04 1.14 -91.41 -0.10 0.94 16 3 C 0.18 3.06 6.56 -156.37 -1.03 2.03 16 4 N -0.39 -6.69 10.69 30.90 0.33 -6.36 16 5 O 0.07 1.28 11.31 18.09 0.20 1.48 16 6 C 0.21 3.90 7.77 -13.06 -0.10 3.80 16 7 C -0.02 -0.36 5.78 -27.88 -0.16 -0.52 16 8 C -0.01 -0.17 4.02 -27.88 -0.11 -0.29 16 9 C -0.53 -14.29 9.66 -34.44 -0.33 -14.63 16 10 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 13 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 N -0.48 -9.03 11.55 -9.86 -0.11 -9.14 16 18 C -0.13 -1.35 5.73 -26.40 -0.15 -1.50 16 19 C -0.12 -1.06 6.34 -25.62 -0.16 -1.22 16 20 C -0.08 -0.73 7.52 38.30 0.29 -0.44 16 21 S -0.24 -3.29 22.08 -107.50 -2.37 -5.66 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 26 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 28 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.08 0.66 7.62 -51.92 -0.40 0.27 16 31 H 0.10 1.14 6.55 -51.93 -0.34 0.80 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -31.26 304.67 -7.80 -39.06 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.89 Total: -3.86 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.65 Total: -10.89 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.99 Total: -41.70 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.37 Total: -5.66 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.26 -7.80 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382354607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.819 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds