Wall clock time and date at job start Mon Mar 30 2020 22:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.33644 * 126.03631 * 89.69418 * 14 13 12 16 16 N 1.31782 * 114.49754 * 179.78511 * 15 14 13 17 17 C 1.29028 * 117.12403 * 0.52113 * 16 15 14 18 18 C 1.50699 * 124.91152 * 179.75253 * 17 16 15 19 19 C 1.52994 * 109.47428 * 59.95676 * 18 17 16 20 20 C 1.53004 * 109.46738 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47339 * 299.95321 * 18 17 16 22 22 S 1.70973 * 110.16882 * 359.71348 * 17 16 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 28 28 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 29 29 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 30 30 H 1.07999 * 122.74548 * 359.96900 * 15 14 13 31 31 H 1.09002 * 109.47412 * 60.00015 * 19 18 17 32 32 H 1.09000 * 109.47175 * 179.97438 * 19 18 17 33 33 H 1.09002 * 109.46904 * 299.99725 * 19 18 17 34 34 H 1.09004 * 109.46865 * 59.99853 * 20 18 17 35 35 H 1.09000 * 109.47200 * 179.97438 * 20 18 17 36 36 H 1.08992 * 109.47199 * 299.99998 * 20 18 17 37 37 H 1.09002 * 109.47057 * 60.00236 * 21 18 17 38 38 H 1.09000 * 109.47131 * 180.02562 * 21 18 17 39 39 H 1.09004 * 109.47202 * 300.00721 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.8381 -1.1760 -4.4472 16 7 2.5188 -1.7450 -5.4217 17 6 3.8023 -1.6157 -5.3962 18 6 4.7481 -2.1966 -6.4155 19 6 4.4168 -1.6323 -7.7985 20 6 6.1861 -1.8282 -6.0450 21 6 4.6017 -3.7194 -6.4376 22 16 4.2746 -0.6890 -4.0392 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 1.4496 -1.4980 -1.4101 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 0.7619 -1.2313 -4.3764 31 1 4.5212 -0.5474 -7.7829 32 1 5.1012 -2.0522 -8.5357 33 1 3.3924 -1.8950 -8.0622 34 1 6.4219 -2.2305 -5.0598 35 1 6.8703 -2.2487 -6.7820 36 1 6.2907 -0.7434 -6.0291 37 1 3.5772 -3.9821 -6.7013 38 1 5.2861 -4.1396 -7.1746 39 1 4.8376 -4.1214 -5.4523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134973708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:10:31 Heat of formation + Delta-G solvation = 33.909331 kcal Electronic energy + Delta-G solvation = -18059.490228 eV Core-core repulsion = 15321.583927 eV Total energy + Delta-G solvation = -2737.906301 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.79510 -37.11230 -36.17281 -32.80544 -31.04268 -28.41815 -27.61288 -27.43554 -25.77288 -25.07174 -23.24185 -20.99464 -20.28802 -18.58823 -17.69704 -16.69358 -15.56059 -15.05740 -14.92977 -14.59168 -14.38736 -14.04074 -13.85706 -13.46143 -13.00365 -12.75301 -12.50187 -12.40184 -12.22605 -12.04676 -11.87147 -11.67126 -11.60618 -11.19455 -11.19376 -11.07279 -10.83172 -10.54847 -10.16039 -9.60863 -9.39785 -9.21532 -9.01631 -8.65922 -8.57463 -7.52640 -6.06599 -4.04457 0.87774 1.51797 1.99225 2.97863 3.23443 3.32669 3.36315 4.01802 4.37887 4.61016 4.71903 4.86744 4.99374 5.22513 5.26320 5.28726 5.35998 5.42689 5.46298 5.55486 5.66299 5.69523 5.76687 5.82979 5.89341 6.00086 6.08817 6.11640 6.14602 6.24729 6.36506 6.44773 6.67110 7.05218 7.64609 7.81984 7.88377 8.21119 8.65467 9.04807 9.55322 11.06914 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.003894 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.703513 B = 7188.319694 C = 7427.592149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.666 5.666 13 C 0.129 3.871 14 C -0.201 4.201 15 C 0.025 3.975 16 N -0.471 5.471 17 C 0.036 3.964 18 C 0.013 3.987 19 C -0.132 4.132 20 C -0.155 4.155 21 C -0.134 4.134 22 S 0.148 5.852 23 H 0.026 0.974 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.264 0.736 27 H 0.334 0.666 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.169 0.831 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -0.065 -21.120 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.296 5.296 13 C -0.003 4.003 14 C -0.322 4.322 15 C -0.126 4.126 16 N -0.184 5.184 17 C -0.242 4.242 18 C 0.009 3.991 19 C -0.191 4.191 20 C -0.213 4.213 21 C -0.193 4.193 22 S 0.404 5.596 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.186 0.814 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.866 0.080 -20.761 21.574 hybrid contribution -2.730 0.865 0.255 2.875 sum 3.137 0.944 -20.506 20.766 Atomic orbital electron populations 1.22868 1.01353 1.01038 0.98968 1.19677 0.88676 0.95154 0.89075 0.94715 1.20954 1.31338 1.13829 0.87637 0.90004 1.24938 0.95972 0.96622 0.95845 1.69884 1.45808 1.40298 0.97848 0.86890 0.80587 0.83894 0.76918 1.20755 1.22374 1.19503 1.60711 1.58357 1.08555 1.02004 1.20331 0.98731 0.94508 0.86686 1.26114 0.95580 1.07355 1.03190 1.21602 1.01249 0.98488 0.91274 1.66115 1.05542 1.21273 1.25478 1.26967 0.94156 1.02865 1.00173 1.19155 0.91711 0.96022 0.92190 1.21822 1.02453 1.00751 0.94091 1.22028 0.94463 1.02209 1.02553 1.21833 1.02752 0.92486 1.02184 1.83991 1.07856 1.47971 1.19750 0.95451 0.93517 0.92601 0.92647 0.84821 0.93912 0.90286 0.81400 0.92639 0.91885 0.91594 0.91612 0.90931 0.91863 0.91581 0.91895 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.86 8.64 37.16 0.32 -3.54 16 2 C 0.18 4.23 2.17 -68.86 -0.15 4.08 16 3 H 0.04 0.83 6.86 -51.93 -0.36 0.48 16 4 C -0.50 -14.01 9.42 -34.44 -0.32 -14.34 16 5 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 8 Si 0.89 21.75 24.37 -169.99 -4.14 17.60 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 12 N -0.67 -13.38 6.22 -109.21 -0.68 -14.06 16 13 C 0.13 2.14 6.02 -4.97 -0.03 2.11 16 14 C -0.20 -3.06 6.11 -35.92 -0.22 -3.27 16 15 C 0.03 0.37 11.25 -19.18 -0.22 0.15 16 16 N -0.47 -6.88 10.53 -11.86 -0.12 -7.01 16 17 C 0.04 0.47 5.78 -13.46 -0.08 0.40 16 18 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 19 C -0.13 -1.17 8.45 37.15 0.31 -0.86 16 20 C -0.15 -1.30 7.54 37.16 0.28 -1.02 16 21 C -0.13 -1.27 8.45 37.16 0.31 -0.96 16 22 S 0.15 2.03 21.57 -107.50 -2.32 -0.29 16 23 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 24 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 25 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.33 6.45 8.46 -39.29 -0.33 6.12 16 28 H 0.04 0.66 7.44 -51.93 -0.39 0.28 16 29 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 30 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -30.63 324.34 -7.92 -38.55 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.28 Total: 2.51 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.04 Total: -15.43 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.03 Total: -47.83 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.60 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.32 Total: -0.29 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.63 -7.92 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134973708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.462 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds