Wall clock time and date at job start Mon Mar 30 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.33644 * 126.03631 * 89.69418 * 14 13 12 16 16 N 1.31782 * 114.49754 * 179.78511 * 15 14 13 17 17 C 1.29028 * 117.12403 * 0.52113 * 16 15 14 18 18 C 1.50699 * 124.91152 * 179.75253 * 17 16 15 19 19 C 1.52994 * 109.47428 * 59.95676 * 18 17 16 20 20 C 1.53004 * 109.46738 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47339 * 299.95321 * 18 17 16 22 22 S 1.70973 * 110.16882 * 359.71348 * 17 16 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 28 28 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 29 29 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 30 30 H 1.07999 * 122.74548 * 359.96900 * 15 14 13 31 31 H 1.09002 * 109.47412 * 60.00015 * 19 18 17 32 32 H 1.09000 * 109.47175 * 179.97438 * 19 18 17 33 33 H 1.09002 * 109.46904 * 299.99725 * 19 18 17 34 34 H 1.09004 * 109.46865 * 59.99853 * 20 18 17 35 35 H 1.09000 * 109.47200 * 179.97438 * 20 18 17 36 36 H 1.08992 * 109.47199 * 299.99998 * 20 18 17 37 37 H 1.09002 * 109.47057 * 60.00236 * 21 18 17 38 38 H 1.09000 * 109.47131 * 180.02562 * 21 18 17 39 39 H 1.09004 * 109.47202 * 300.00721 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.8381 -1.1760 -4.4472 16 7 2.5188 -1.7450 -5.4217 17 6 3.8023 -1.6157 -5.3962 18 6 4.7481 -2.1966 -6.4155 19 6 4.4168 -1.6323 -7.7985 20 6 6.1861 -1.8282 -6.0450 21 6 4.6017 -3.7194 -6.4376 22 16 4.2746 -0.6890 -4.0392 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 1.4496 -1.4980 -1.4101 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 0.7619 -1.2313 -4.3764 31 1 4.5212 -0.5474 -7.7829 32 1 5.1012 -2.0522 -8.5357 33 1 3.3924 -1.8950 -8.0622 34 1 6.4219 -2.2305 -5.0598 35 1 6.8703 -2.2487 -6.7820 36 1 6.2907 -0.7434 -6.0291 37 1 3.5772 -3.9821 -6.7013 38 1 5.2861 -4.1396 -7.1746 39 1 4.8376 -4.1214 -5.4523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134973708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:10:30 Heat of formation + Delta-G solvation = 12.947695 kcal Electronic energy + Delta-G solvation = -18060.399192 eV Core-core repulsion = 15321.583927 eV Total energy + Delta-G solvation = -2738.815265 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85897 -38.35401 -37.42568 -34.71530 -32.69787 -29.82967 -28.30626 -28.15537 -27.19488 -26.84250 -24.51569 -22.18843 -21.89102 -19.70954 -18.86494 -18.56046 -17.04813 -16.40418 -16.27639 -15.85465 -15.47730 -15.33191 -14.84663 -14.70508 -14.52259 -14.31487 -13.84777 -13.67773 -13.37603 -13.05210 -13.00496 -12.90911 -12.59903 -12.53237 -12.31440 -12.06924 -12.01220 -11.94746 -11.85195 -11.49119 -11.23639 -10.76649 -10.48365 -10.15670 -9.75760 -9.09410 -8.27321 -6.30484 -0.22475 0.44026 0.89964 1.30295 1.35848 1.46112 1.87222 2.32145 3.06809 3.10092 3.51731 3.82962 3.95490 3.98231 4.08276 4.20265 4.40068 4.44348 4.54914 4.55710 4.69006 4.71241 4.75754 4.83350 4.86396 4.97202 4.97772 4.98331 5.03072 5.15434 5.29648 5.36675 5.38052 5.42891 5.64768 5.96034 6.62755 6.63755 6.76772 6.79621 7.34399 8.90237 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.003894 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.703513 B = 7188.319694 C = 7427.592149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.188 3.812 3 H 0.033 0.967 4 C -0.506 4.506 5 H 0.032 0.968 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.247 1.247 12 N -0.681 5.681 13 C 0.136 3.864 14 C -0.225 4.225 15 C 0.029 3.971 16 N -0.491 5.491 17 C 0.047 3.953 18 C 0.007 3.993 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.131 4.131 22 S 0.145 5.855 23 H 0.064 0.936 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.265 0.735 27 H 0.337 0.663 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.183 0.817 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 1.039 -23.458 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.079 3.921 3 H 0.051 0.949 4 C -0.545 4.545 5 H 0.051 0.949 6 C -0.189 4.189 7 N -0.593 5.593 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.228 1.228 11 H -0.171 1.171 12 N -0.311 5.311 13 C 0.006 3.994 14 C -0.347 4.347 15 C -0.122 4.122 16 N -0.205 5.205 17 C -0.231 4.231 18 C 0.004 3.996 19 C -0.187 4.187 20 C -0.211 4.211 21 C -0.190 4.190 22 S 0.402 5.598 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.200 0.800 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.341 1.186 -23.132 23.770 hybrid contribution -2.444 0.390 0.879 2.627 sum 2.897 1.576 -22.252 22.495 Atomic orbital electron populations 1.22724 0.99136 1.01529 1.00245 1.19432 0.90239 0.94241 0.88227 0.94876 1.21255 1.30401 1.12550 0.90252 0.94921 1.25836 0.97575 1.00172 0.95281 1.70055 1.47971 1.42650 0.98577 0.85781 0.78936 0.79802 0.77353 1.19285 1.22752 1.17056 1.60512 1.58591 1.09374 1.02651 1.20246 0.99756 0.93729 0.85709 1.25980 0.96392 1.08886 1.03404 1.21880 1.02050 0.97490 0.90815 1.66197 1.06211 1.22198 1.25903 1.27651 0.94258 1.01271 0.99903 1.19418 0.91924 0.96251 0.92046 1.21801 1.02380 1.00774 0.93713 1.22047 0.93750 1.02441 1.02891 1.21826 1.02690 0.92075 1.02398 1.83978 1.07352 1.48258 1.20229 0.91729 0.94440 0.92670 0.92586 0.84476 0.92029 0.90701 0.79996 0.92743 0.89296 0.92849 0.92447 0.88402 0.91749 0.92854 0.89179 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.01 8.64 71.98 0.62 -6.38 16 2 C 0.19 8.52 2.17 44.17 0.10 8.61 16 3 H 0.03 1.52 6.86 -2.39 -0.02 1.51 16 4 C -0.51 -29.07 9.42 25.60 0.24 -28.83 16 5 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 6 C 0.01 0.47 5.45 84.66 0.46 0.93 16 7 N -0.95 -60.05 13.96 21.45 0.30 -59.76 16 8 Si 0.95 44.43 24.37 68.60 1.67 46.11 16 9 H -0.27 -11.77 6.87 99.48 0.68 -11.09 16 10 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.25 -10.48 6.53 99.48 0.65 -9.83 16 12 N -0.68 -26.96 6.22 -499.43 -3.11 -30.07 16 13 C 0.14 4.32 6.02 85.56 0.51 4.83 16 14 C -0.23 -6.62 6.11 24.64 0.15 -6.47 16 15 C 0.03 0.82 11.25 83.66 0.94 1.76 16 16 N -0.49 -13.83 10.53 -191.45 -2.02 -15.84 16 17 C 0.05 1.17 5.78 88.52 0.51 1.68 16 18 C 0.01 0.14 0.99 -52.93 -0.05 0.08 16 19 C -0.13 -1.96 8.45 71.98 0.61 -1.35 16 20 C -0.15 -2.24 7.54 71.98 0.54 -1.70 16 21 C -0.13 -2.26 8.45 71.98 0.61 -1.65 16 22 S 0.14 3.87 21.57 -56.49 -1.22 2.65 16 23 H 0.06 2.07 7.45 -2.39 -0.02 2.05 16 24 H 0.04 1.54 3.27 -2.39 -0.01 1.54 16 25 H 0.05 2.15 8.13 -2.38 -0.02 2.14 16 26 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 27 H 0.34 12.86 8.46 -89.70 -0.76 12.10 16 28 H 0.06 1.72 7.44 -2.39 -0.02 1.70 16 29 H 0.07 2.41 8.06 -2.39 -0.02 2.39 16 30 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.94 7.92 -2.39 -0.02 0.92 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.93 7.92 -2.39 -0.02 0.91 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -67.55 324.34 1.07 -66.49 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.19 Total: 18.90 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 5.24 Total: -28.48 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.82 Total: -105.67 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.67 Total: 46.11 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.22 Total: 2.65 kcal Total: -67.55 1.07 -66.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134973708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.436 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds