Wall clock time and date at job start Mon Mar 30 2020 22:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46660 * 2 1 4 4 H 1.08996 * 109.47108 * 304.77265 * 3 2 1 5 5 C 1.50703 * 109.46908 * 184.78008 * 3 2 1 6 6 H 1.07997 * 120.00076 * 245.45642 * 5 3 2 7 7 C 1.37872 * 120.00037 * 65.44535 * 5 3 2 8 8 N 1.31520 * 120.00318 * 9.50098 * 7 5 3 9 9 Si 1.86806 * 119.99950 * 189.49164 * 7 5 3 10 10 H 1.48495 * 109.47130 * 85.00029 * 9 7 5 11 11 H 1.48507 * 109.47058 * 204.99938 * 9 7 5 12 12 H 1.48499 * 109.47367 * 324.99693 * 9 7 5 13 13 O 1.45191 * 109.47303 * 64.77853 * 3 2 1 14 14 C 1.34235 * 117.00186 * 269.99467 * 13 3 2 15 15 O 1.20822 * 119.99655 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00124 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.47255 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47117 * 59.99969 * 17 16 14 19 19 C 1.53010 * 109.46913 * 300.00270 * 17 16 14 20 20 C 1.52998 * 109.47155 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.47121 * 59.99942 * 20 19 17 22 22 C 1.52997 * 109.47000 * 300.00268 * 21 20 19 23 23 C 1.52997 * 109.47510 * 180.02562 * 17 16 14 24 24 H 1.09002 * 109.47637 * 299.99972 * 1 2 3 25 25 H 1.08994 * 109.47512 * 60.00419 * 1 2 3 26 26 H 1.09001 * 109.47069 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47277 * 240.00181 * 2 1 3 28 28 H 1.09000 * 109.47284 * 119.99205 * 2 1 3 29 29 H 0.96998 * 120.00205 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47926 * 300.00546 * 16 14 13 31 31 H 1.09001 * 109.47017 * 60.00594 * 16 14 13 32 32 H 1.08997 * 109.47238 * 60.00378 * 18 17 16 33 33 H 1.09004 * 109.47040 * 180.02562 * 18 17 16 34 34 H 1.09007 * 109.47313 * 300.00331 * 18 17 16 35 35 H 1.08992 * 109.46987 * 299.99759 * 19 17 16 36 36 H 1.08997 * 109.46968 * 59.99873 * 19 17 16 37 37 H 1.09001 * 109.47093 * 300.00093 * 20 19 17 38 38 H 1.08990 * 109.47171 * 180.02562 * 20 19 17 39 39 H 1.08994 * 109.47281 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47014 * 60.00102 * 21 20 19 41 41 H 1.09001 * 109.47102 * 299.99781 * 22 21 20 42 42 H 1.09005 * 109.47361 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46451 * 299.99951 * 23 17 16 44 44 H 1.08992 * 109.47461 * 59.99585 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6084 1.9805 -0.8441 5 6 3.5423 1.4443 -0.1184 6 1 4.1478 1.8096 0.6978 7 6 4.1436 0.9793 -1.2686 8 7 3.4143 0.7103 -2.3295 9 14 5.9945 0.7314 -1.3203 10 1 6.3300 -0.6078 -0.7734 11 1 6.4674 0.8252 -2.7249 12 1 6.6573 1.7798 -0.5038 13 8 1.6512 2.0933 1.2384 14 6 0.4680 2.7272 1.2485 15 8 -0.2203 2.7374 0.2555 16 6 -0.0024 3.4249 2.4986 17 6 -1.3701 4.0614 2.2436 18 6 -2.3747 2.9738 1.8578 19 6 -1.2557 5.0770 1.1049 20 6 -2.6235 5.7130 0.8493 21 6 -3.1016 6.4214 2.1184 22 6 -3.2160 5.4059 3.2570 23 6 -1.8474 4.7704 3.5126 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8375 0.3835 -3.1388 30 1 -0.0843 2.7015 3.3097 31 1 0.7136 4.1995 2.7736 32 1 -2.4563 2.2504 2.6690 33 1 -3.3491 3.4274 1.6757 34 1 -2.0345 2.4691 0.9536 35 1 -0.5400 5.8517 1.3796 36 1 -0.9155 4.5722 0.2007 37 1 -3.3389 4.9380 0.5744 38 1 -2.5421 6.4361 0.0379 39 1 -4.0759 6.8749 1.9363 40 1 -2.3862 7.1965 2.3934 41 1 -3.9315 4.6308 2.9821 42 1 -3.5571 5.9104 4.1611 43 1 -1.9288 4.0471 4.3240 44 1 -1.1317 5.5452 3.7870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188007708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:10:05 Heat of formation + Delta-G solvation = -126.089684 kcal Electronic energy + Delta-G solvation = -22028.765638 eV Core-core repulsion = 18944.708732 eV Total energy + Delta-G solvation = -3084.056906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31255 -38.63270 -35.75894 -33.43082 -33.00201 -31.45395 -30.65990 -28.18028 -27.08153 -26.48599 -23.24357 -22.59843 -21.76755 -20.42726 -19.33919 -18.25167 -16.87639 -16.56391 -15.54790 -15.33921 -15.30700 -14.53466 -14.33595 -14.28019 -13.62101 -13.19774 -12.89380 -12.77746 -12.58360 -12.12002 -11.95999 -11.61430 -11.55824 -11.42745 -11.42263 -11.19945 -11.13587 -10.97016 -10.85879 -10.68625 -10.58913 -10.24726 -10.16025 -10.06078 -9.90696 -9.77775 -9.39033 -9.05845 -8.76551 -8.43862 -6.18825 -4.22241 3.10449 3.25889 3.31433 3.34312 3.77482 4.35653 4.67081 4.77156 4.84478 5.14010 5.15828 5.25705 5.31971 5.46967 5.48951 5.60397 5.69410 5.73155 5.81011 5.87089 5.93474 6.03896 6.05838 6.07779 6.17702 6.19578 6.21057 6.25743 6.36525 6.41341 6.45075 6.51417 6.71795 6.74650 6.87933 6.99581 7.14804 7.28714 7.60890 7.71637 7.94108 8.18635 8.70939 8.96721 9.42098 10.90091 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033655 B = 0.004490 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.763465 B = 6234.569087 C = 6412.163405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.054 0.946 5 C -0.525 4.525 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.906 3.094 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.359 6.359 14 C 0.452 3.548 15 O -0.509 6.509 16 C -0.110 4.110 17 C -0.042 4.042 18 C -0.158 4.158 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.108 4.108 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.266 0.734 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 7.148 9.692 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.563 4.563 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.276 6.276 14 C 0.296 3.704 15 O -0.399 6.399 16 C -0.148 4.148 17 C -0.042 4.042 18 C -0.214 4.214 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.146 4.146 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.377 7.053 9.176 16.228 hybrid contribution 0.972 -0.236 -0.140 1.010 sum -10.405 6.818 9.036 15.375 Atomic orbital electron populations 1.21864 0.98043 0.99029 1.01083 1.21909 0.93012 0.99538 1.02106 1.20618 0.94957 0.88448 0.79251 0.92842 1.21004 0.89731 1.43667 1.01879 0.91446 1.24883 0.98988 0.95189 0.94639 1.69989 1.35964 1.44071 1.02202 0.86390 0.84229 0.78896 0.77235 1.20267 1.21086 1.19691 1.86475 1.34597 1.62464 1.44018 1.23266 0.80539 0.76853 0.89723 1.90473 1.55125 1.58350 1.36001 1.21466 0.97670 1.00476 0.95219 1.20276 0.93099 0.95539 0.95309 1.22225 0.98434 0.97768 1.03009 1.21864 0.96603 0.97405 1.00143 1.21539 0.97729 0.99452 0.96797 1.21549 1.00550 0.97910 0.95659 1.21551 0.97433 0.98564 0.98036 1.21595 0.96880 0.99353 0.96753 0.94516 0.92622 0.94925 0.89412 0.93795 0.92445 0.88717 0.88636 0.93778 0.92601 0.89531 0.92895 0.88739 0.91738 0.92502 0.92640 0.92329 0.91686 0.92510 0.92083 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.56 37.16 0.32 -2.72 16 2 C -0.13 -3.10 5.54 -26.73 -0.15 -3.25 16 3 C 0.22 5.78 2.12 -27.88 -0.06 5.72 16 4 H 0.05 1.57 7.10 -51.93 -0.37 1.20 16 5 C -0.52 -14.70 8.82 -34.44 -0.30 -15.01 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 7 C 0.07 1.81 5.16 -17.82 -0.09 1.72 16 8 N -0.89 -25.22 12.16 55.43 0.67 -24.55 16 9 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 O -0.36 -8.41 9.80 -39.27 -0.39 -8.79 16 14 C 0.45 8.96 5.82 36.00 0.21 9.17 16 15 O -0.51 -10.80 8.49 -18.75 -0.16 -10.95 16 16 C -0.11 -1.61 4.88 -27.89 -0.14 -1.75 16 17 C -0.04 -0.55 0.51 -154.51 -0.08 -0.63 16 18 C -0.16 -2.14 7.48 37.16 0.28 -1.86 16 19 C -0.12 -1.71 4.43 -26.73 -0.12 -1.83 16 20 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 21 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 22 C -0.12 -1.14 5.65 -26.71 -0.15 -1.29 16 23 C -0.11 -1.14 4.73 -26.71 -0.13 -1.26 16 24 H 0.04 0.74 6.06 -51.93 -0.31 0.43 16 25 H 0.05 1.24 7.78 -51.93 -0.40 0.84 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.31 6.81 -51.93 -0.35 1.96 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 34 H 0.09 1.43 5.52 -51.93 -0.29 1.15 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.62 5.52 -51.93 -0.29 1.34 16 37 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -28.77 326.90 -8.23 -37.01 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.55 Total: 2.20 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.72 Total: -15.89 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.67 Total: -24.55 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.54 Total: -19.75 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.77 -8.23 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188007708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.084 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds