Wall clock time and date at job start Mon Mar 30 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76200 * 103.00097 * 2 1 4 4 C 1.38968 * 120.05185 * 0.02562 * 3 2 1 5 5 C 1.38083 * 119.94137 * 179.97438 * 4 3 2 6 6 C 1.38497 * 120.05601 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.94605 * 180.02562 * 6 5 4 8 8 C 1.38462 * 120.11206 * 359.78492 * 6 5 4 9 9 C 1.38120 * 120.05240 * 0.46445 * 8 6 5 10 10 C 1.50696 * 120.02968 * 179.79073 * 9 8 6 11 11 N 1.46899 * 109.47473 * 259.72692 * 10 9 8 12 12 C 1.46896 * 111.00228 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47078 * 35.00260 * 12 11 10 14 14 C 1.53003 * 109.47112 * 274.99952 * 12 11 10 15 15 C 1.50703 * 109.47173 * 155.00072 * 12 11 10 16 16 H 1.08006 * 119.99817 * 35.00135 * 15 12 11 17 17 C 1.37879 * 120.00142 * 215.00605 * 15 12 11 18 18 N 1.31514 * 120.00065 * 184.91318 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.90769 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 H 1.09005 * 109.46863 * 59.99901 * 1 2 3 24 24 H 1.08998 * 109.47353 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47153 * 300.00184 * 1 2 3 26 26 H 1.07990 * 120.02797 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.96926 * 179.97438 * 5 4 3 28 28 H 1.07994 * 119.97665 * 180.23669 * 8 6 5 29 29 H 1.09005 * 109.47185 * 139.72771 * 10 9 8 30 30 H 1.09004 * 109.46925 * 19.72430 * 10 9 8 31 31 H 1.00900 * 111.00401 * 303.95548 * 11 10 9 32 32 H 1.08992 * 109.47211 * 295.04795 * 14 12 11 33 33 H 1.09004 * 109.46494 * 175.05195 * 14 12 11 34 34 H 1.08995 * 109.46837 * 55.05992 * 14 12 11 35 35 H 0.96999 * 120.00472 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1949 2.6655 0.0005 5 6 1.5082 4.0104 0.0011 6 6 2.8330 4.4140 0.0016 7 9 3.1369 5.7304 0.0027 8 6 3.8466 3.4707 0.0061 9 6 3.5385 2.1243 0.0004 10 6 4.6420 1.0981 0.0005 11 7 4.8371 0.5885 -1.3634 12 6 5.9082 -0.4160 -1.4019 13 1 5.8939 -0.9979 -0.4803 14 6 7.2607 0.2857 -1.5412 15 6 5.6947 -1.3332 -2.5785 16 1 5.2819 -0.9449 -3.4979 17 6 6.0261 -2.6680 -2.4811 18 7 5.9310 -3.4478 -3.5359 19 14 6.6105 -3.3688 -0.8512 20 1 5.4356 -3.7430 -0.0237 21 1 7.4441 -4.5722 -1.1002 22 1 7.4162 -2.3482 -0.1339 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1618 2.3513 0.0005 27 1 0.7193 4.7480 0.0011 28 1 4.8789 3.7879 0.0104 29 1 4.3719 0.2742 0.6611 30 1 5.5657 1.5580 0.3521 31 1 3.9771 0.2150 -1.7363 32 1 7.3080 0.7958 -2.5032 33 1 8.0607 -0.4523 -1.4815 34 1 7.3769 1.0132 -0.7379 35 1 6.1646 -4.3868 -3.4676 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309894607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:10:20 Heat of formation + Delta-G solvation = -24.942703 kcal Electronic energy + Delta-G solvation = -18077.407693 eV Core-core repulsion = 15115.770409 eV Total energy + Delta-G solvation = -2961.637284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.86397 -39.15520 -36.04943 -32.93743 -31.54943 -30.88096 -28.97868 -28.63030 -25.50520 -24.49027 -22.93490 -21.38489 -19.66933 -17.72038 -17.28269 -16.73605 -16.59532 -15.58539 -15.15617 -14.89764 -14.42816 -14.14359 -13.88061 -13.75645 -13.35911 -13.30681 -12.89565 -12.49643 -12.34608 -12.23709 -11.91805 -11.77160 -11.16377 -11.01357 -10.72237 -10.64350 -10.36624 -10.07039 -9.76896 -9.50980 -9.06957 -8.94301 -8.58258 -7.45306 -7.27668 -6.09984 -4.10232 1.00829 1.17443 1.53027 2.42786 3.26487 3.34969 3.36791 3.45193 4.22408 4.39236 4.61719 4.74335 4.95020 4.98116 5.03248 5.19326 5.27149 5.47153 5.54069 5.64162 5.68904 5.78546 6.04139 6.06646 6.10786 6.38003 6.50590 6.66623 6.79990 6.83209 6.88539 7.42283 7.63546 7.93496 8.40315 8.65804 8.99644 9.54033 11.03036 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.005814 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.552953 B = 4815.143736 C = 5718.471966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 S -0.082 6.082 3 C -0.096 4.096 4 C -0.108 4.108 5 C -0.142 4.142 6 C 0.089 3.911 7 F -0.142 7.142 8 C -0.120 4.120 9 C -0.020 4.020 10 C 0.087 3.913 11 N -0.676 5.676 12 C 0.180 3.820 13 H 0.005 0.995 14 C -0.125 4.125 15 C -0.515 4.515 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.896 5.896 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.084 0.916 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.347 0.653 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.020 0.980 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 11.206 10.000 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 S 0.161 5.839 3 C -0.209 4.209 4 C -0.132 4.132 5 C -0.163 4.163 6 C 0.067 3.933 7 F -0.121 7.121 8 C -0.141 4.141 9 C -0.026 4.026 10 C -0.042 4.042 11 N -0.309 5.309 12 C 0.072 3.928 13 H 0.023 0.977 14 C -0.184 4.184 15 C -0.554 4.554 16 H 0.098 0.902 17 C -0.127 4.127 18 N -0.533 5.533 19 Si 0.700 3.300 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.190 1.190 23 H 0.103 0.897 24 H 0.127 0.873 25 H 0.099 0.901 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.158 0.842 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.375 10.463 9.734 17.091 hybrid contribution -0.951 0.147 1.187 1.528 sum -10.326 10.610 10.921 18.398 Atomic orbital electron populations 1.23756 0.96328 1.07163 1.05275 1.86212 1.04705 1.01327 1.91607 1.21797 0.96028 0.97561 1.05539 1.20925 0.98426 0.91953 1.01859 1.20910 0.94845 0.96514 1.04029 1.17639 0.93645 0.77644 1.04346 1.91482 1.94020 1.32523 1.94087 1.20974 0.99417 0.91643 1.02043 1.19512 0.92583 0.94036 0.96482 1.21002 0.94995 0.94606 0.93627 1.60839 1.11928 1.41976 1.16172 1.19589 0.88294 0.88748 0.96156 0.97736 1.21851 0.98191 0.98609 0.99742 1.21041 1.42970 0.92343 0.99011 0.90210 1.25001 0.94724 0.96905 0.96118 1.69897 1.48545 1.06019 1.28863 0.86931 0.79377 0.78734 0.84960 1.20181 1.21431 1.18996 0.89707 0.87349 0.90072 0.85131 0.84837 0.84168 0.94189 0.90392 0.83368 0.92911 0.94015 0.96110 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.15 101.05 0.92 -0.56 16 2 S -0.08 -1.18 20.10 -107.50 -2.16 -3.34 16 3 C -0.10 -1.37 6.11 -39.06 -0.24 -1.61 16 4 C -0.11 -1.28 9.36 -39.37 -0.37 -1.64 16 5 C -0.14 -1.66 10.02 -39.54 -0.40 -2.05 16 6 C 0.09 1.18 7.30 -39.40 -0.29 0.89 16 7 F -0.14 -1.90 17.26 2.25 0.04 -1.86 16 8 C -0.12 -1.69 9.64 -39.54 -0.38 -2.07 16 9 C -0.02 -0.31 5.41 -104.41 -0.56 -0.87 16 10 C 0.09 1.52 5.02 -4.98 -0.02 1.50 16 11 N -0.68 -14.11 6.29 -109.22 -0.69 -14.79 16 12 C 0.18 4.25 2.26 -68.86 -0.16 4.10 16 13 H 0.00 0.12 4.95 -51.93 -0.26 -0.14 16 14 C -0.13 -2.74 9.42 37.16 0.35 -2.39 16 15 C -0.52 -14.31 8.84 -34.44 -0.30 -14.62 16 16 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 19 Si 0.87 21.40 26.99 -169.99 -4.59 16.81 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.26 6.82 56.52 0.39 -5.88 16 23 H 0.08 0.73 7.75 -51.92 -0.40 0.33 16 24 H 0.11 0.92 8.14 -51.92 -0.42 0.49 16 25 H 0.08 0.64 7.75 -51.92 -0.40 0.23 16 26 H 0.13 1.21 5.88 -52.49 -0.31 0.90 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.14 1.82 8.03 -52.49 -0.42 1.40 16 29 H 0.04 0.72 7.16 -51.93 -0.37 0.35 16 30 H 0.08 1.29 7.22 -51.93 -0.37 0.91 16 31 H 0.35 7.50 7.41 -39.29 -0.29 7.21 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -29.97 305.98 -8.03 -38.00 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.48 Total: 4.11 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.55 Total: -17.29 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.09 Total: -41.04 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.81 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.16 Total: -3.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.97 -8.03 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309894607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.056 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds