Wall clock time and date at job start Mon Mar 30 2020 22:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99718 * 2 1 4 4 C 1.50703 * 109.46574 * 180.02562 * 3 2 1 5 5 C 1.37619 * 120.18388 * 359.72368 * 4 3 2 6 6 C 1.38773 * 120.10589 * 179.76987 * 5 4 3 7 7 Br 1.89093 * 119.76041 * 180.25227 * 6 5 4 8 8 C 1.38759 * 120.47466 * 0.50614 * 6 5 4 9 9 C 1.36566 * 120.36715 * 359.75031 * 8 6 5 10 10 C 1.40734 * 119.88224 * 359.97438 * 9 8 6 11 11 C 1.41355 * 120.23599 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 154.20541 * 11 10 9 13 13 C 1.39930 * 119.99897 * 334.20786 * 11 10 9 14 14 N 1.30834 * 120.00250 * 343.51433 * 13 11 10 15 15 Si 1.86799 * 120.00438 * 163.51762 * 13 11 10 16 16 H 1.48503 * 109.46756 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47490 * 119.99710 * 15 13 11 18 18 H 1.48501 * 109.47392 * 239.99957 * 15 13 11 19 19 H 1.09010 * 109.46815 * 300.00375 * 1 2 3 20 20 H 1.08997 * 109.47142 * 59.99840 * 1 2 3 21 21 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99877 * 3 2 1 23 23 H 1.08990 * 109.47557 * 60.00211 * 3 2 1 24 24 H 1.08001 * 119.94815 * 0.02562 * 5 4 3 25 25 H 1.07999 * 119.81854 * 179.72379 * 8 6 5 26 26 H 1.08004 * 120.05698 * 179.97438 * 9 8 6 27 27 H 0.96996 * 120.00795 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1083 -0.0541 0.0046 6 6 5.4918 -0.1618 -0.0008 7 35 6.3001 -1.8713 -0.0007 8 6 6.2863 0.9758 -0.0010 9 6 5.7156 2.2165 -0.0009 10 6 4.3140 2.3435 -0.0013 11 6 3.7153 3.6240 -0.0007 12 1 2.7239 3.7568 -0.4079 13 6 4.4073 4.7196 0.5274 14 7 5.4455 4.5270 1.3000 15 14 3.8488 6.4572 0.1295 16 1 2.6600 6.4037 -0.7588 17 1 3.4963 7.1640 1.3870 18 1 4.9464 7.1851 -0.5565 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.6886 1.8464 -0.8900 23 1 1.6887 1.8464 0.8899 24 1 3.4982 -0.9452 0.0088 25 1 7.3620 0.8796 -0.0007 26 1 6.3388 3.0986 -0.0007 27 1 5.9250 5.2864 1.6664 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258347313.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:11:28 Heat of formation + Delta-G solvation = -51.607583 kcal Electronic energy + Delta-G solvation = -13096.307521 eV Core-core repulsion = 10671.118023 eV Total energy + Delta-G solvation = -2425.189498 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 270.000 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.94286 -38.27515 -35.70951 -33.12705 -31.95006 -30.40216 -28.21634 -26.82695 -25.93561 -22.75521 -21.57227 -19.23735 -17.53663 -17.08220 -16.65103 -16.47397 -15.75511 -15.25727 -14.82318 -14.41909 -14.07070 -13.40884 -13.24668 -13.02843 -12.92671 -12.73319 -12.34367 -12.06764 -11.61519 -11.42228 -11.29691 -10.98188 -10.82781 -10.62609 -9.35959 -9.21266 -8.71219 -6.43248 0.74332 1.02212 1.19560 1.40934 1.48361 1.55754 2.18403 2.62685 2.99472 3.55901 4.23959 4.43338 4.50142 4.54958 4.64487 4.75656 4.81766 4.85870 5.07203 5.18602 5.31554 5.57568 5.63060 5.86671 5.98020 6.19307 6.43012 6.55101 6.82837 6.86796 8.24464 Molecular weight = 270.00amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.007373 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.507141 B = 3796.927528 C = 5138.712734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.144 3.856 4 C -0.219 4.219 5 C -0.040 4.040 6 C -0.215 4.215 7 Br -0.086 7.086 8 C -0.077 4.077 9 C -0.181 4.181 10 C 0.101 3.899 11 C -0.477 4.477 12 H 0.088 0.912 13 C 0.038 3.962 14 N -0.813 5.813 15 Si 0.983 3.017 16 H -0.254 1.254 17 H -0.266 1.266 18 H -0.265 1.265 19 H 0.046 0.954 20 H 0.048 0.952 21 H 0.101 0.899 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -4.241 -1.836 5.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.068 3.932 4 C -0.222 4.222 5 C -0.060 4.060 6 C -0.294 4.294 7 Br -0.002 7.002 8 C -0.097 4.097 9 C -0.201 4.201 10 C 0.098 3.902 11 C -0.505 4.505 12 H 0.106 0.894 13 C -0.179 4.179 14 N -0.438 5.438 15 Si 0.803 3.197 16 H -0.177 1.177 17 H -0.191 1.191 18 H -0.190 1.190 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.120 0.880 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.135 0.865 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.702 -4.924 -1.682 5.863 hybrid contribution -0.242 1.293 0.074 1.317 sum -2.944 -3.632 -1.608 4.944 Atomic orbital electron populations 1.22922 0.79675 1.03778 1.00663 1.87797 1.21346 1.28572 1.95550 1.20713 0.89910 0.83311 0.99296 1.19796 0.94133 0.92929 1.15297 1.20436 0.92004 0.97158 0.96389 1.21110 0.94502 0.89175 1.24648 1.96322 1.82248 1.23065 1.98614 1.20515 0.98319 0.91797 0.99025 1.20991 0.95253 0.95812 1.08028 1.17755 0.92027 0.92707 0.87690 1.19927 1.03204 0.92349 1.34997 0.89399 1.26815 0.93707 1.05679 0.91698 1.69862 1.16750 1.35620 1.21559 0.85132 0.79646 0.75614 0.79271 1.17711 1.19109 1.18994 0.93545 0.93292 0.88039 0.93127 0.93483 0.86537 0.87076 0.86918 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 15 2 O -0.41 -15.44 9.19 -148.98 -1.37 -16.81 15 3 C 0.14 5.89 5.14 71.24 0.37 6.25 15 4 C -0.22 -10.52 5.94 -19.40 -0.12 -10.63 15 5 C -0.04 -1.86 9.11 22.25 0.20 -1.65 15 6 C -0.21 -9.73 6.25 22.52 0.14 -9.59 15 7 Br -0.09 -3.22 33.69 -20.37 -0.69 -3.91 15 8 C -0.08 -3.60 9.71 22.00 0.21 -3.39 15 9 C -0.18 -9.24 8.64 22.49 0.19 -9.04 15 10 C 0.10 5.21 5.56 -21.29 -0.12 5.09 15 11 C -0.48 -23.58 8.49 23.45 0.20 -23.38 15 12 H 0.09 4.10 7.02 -2.91 -0.02 4.08 15 13 C 0.04 1.78 5.16 85.25 0.44 2.21 15 14 N -0.81 -39.93 10.96 21.82 0.24 -39.69 15 15 Si 0.98 35.16 29.59 68.60 2.03 37.19 15 16 H -0.25 -8.79 7.11 99.48 0.71 -8.08 15 17 H -0.27 -9.20 7.11 99.48 0.71 -8.49 15 18 H -0.27 -9.23 7.11 99.48 0.71 -8.52 15 19 H 0.05 1.12 8.14 -2.38 -0.02 1.10 15 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.05 1.98 7.80 -2.39 -0.02 1.97 15 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.12 5.16 7.01 -2.91 -0.02 5.14 15 25 H 0.11 4.76 8.06 -2.91 -0.02 4.73 15 26 H 0.11 5.92 6.20 -2.91 -0.02 5.90 15 27 H 0.29 12.89 8.30 -92.71 -0.77 12.12 15 Total: -1.00 -54.46 256.70 4.16 -50.31 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.17 Total: 15.14 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 2.77 Total: -42.21 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.24 Total: -39.69 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.37 Total: -16.81 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Atomic # 35 Polarization: -3.22 SS G_CDS: -0.69 Total: -3.91 kcal Total: -54.46 4.16 -50.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258347313.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.302 kcal (2) G-P(sol) polarization free energy of solvation -54.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds