Wall clock time and date at job start Mon Mar 30 2020 22:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.38390 * 119.99576 * 2 1 4 4 N 1.32506 * 119.18313 * 359.97438 * 3 2 1 5 5 C 1.32474 * 120.94071 * 180.02562 * 4 3 2 6 6 C 1.38173 * 119.28186 * 359.72174 * 5 4 3 7 7 C 1.39635 * 118.48699 * 0.55866 * 6 5 4 8 8 N 1.38632 * 120.48617 * 179.71123 * 7 6 5 9 9 C 1.38966 * 119.99626 * 352.07858 * 8 7 6 10 10 C 1.39554 * 119.84633 * 317.87728 * 9 8 7 11 11 C 1.36336 * 120.16522 * 180.25511 * 10 9 8 12 12 C 1.40898 * 119.83381 * 359.52304 * 11 10 9 13 13 C 1.41118 * 120.15801 * 180.23059 * 12 11 10 14 14 H 1.08004 * 119.99519 * 29.78953 * 13 12 11 15 15 C 1.39863 * 120.00148 * 209.78370 * 13 12 11 16 16 N 1.30894 * 120.00040 * 9.28589 * 15 13 12 17 17 Si 1.86803 * 120.00273 * 189.28714 * 15 13 12 18 18 H 1.48497 * 109.47176 * 89.99835 * 17 15 13 19 19 H 1.48502 * 109.47242 * 210.00097 * 17 15 13 20 20 H 1.48505 * 109.46639 * 330.00024 * 17 15 13 21 21 C 1.40892 * 119.68141 * 0.45521 * 12 11 10 22 22 C 1.36339 * 119.83769 * 359.77325 * 21 12 11 23 23 N 1.32430 * 119.17388 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47038 * 300.00124 * 1 2 3 26 26 H 1.08999 * 109.46839 * 60.00342 * 1 2 3 27 27 H 0.96998 * 119.99730 * 179.97438 * 2 1 3 28 28 H 1.07996 * 120.35952 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.75406 * 180.27805 * 6 5 4 30 30 H 0.96996 * 119.99809 * 172.08206 * 8 7 6 31 31 H 1.08000 * 119.91466 * 359.97438 * 10 9 8 32 32 H 1.07992 * 120.08344 * 179.72273 * 11 10 9 33 33 H 0.97002 * 120.00549 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.07995 * 179.75657 * 21 12 11 35 35 H 1.07995 * 119.91565 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1570 1.1985 0.0000 4 7 1.4781 2.3365 -0.0005 5 6 2.1048 3.5035 -0.0010 6 6 3.4863 3.5287 0.0048 7 6 4.1746 2.3138 -0.0009 8 7 5.5607 2.2907 -0.0014 9 6 6.2752 3.4718 -0.1621 10 6 5.8601 4.4115 -1.1066 11 6 6.5592 5.5701 -1.2734 12 6 7.6975 5.8219 -0.4821 13 6 8.4234 7.0210 -0.6456 14 1 7.9176 7.9183 -0.9705 15 6 9.7976 7.0475 -0.3868 16 7 10.4445 5.9303 -0.1709 17 14 10.7098 8.6772 -0.3494 18 1 10.6912 9.2233 1.0314 19 1 12.1155 8.4677 -0.7799 20 1 10.0478 9.6362 -1.2700 21 6 8.1103 4.8687 0.4697 22 6 7.4042 3.7125 0.6222 23 7 3.4811 1.1795 0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9501 -0.8401 0.0004 28 1 1.5421 4.4253 -0.0019 29 1 4.0216 4.4668 0.0090 30 1 6.0318 1.4502 0.1104 31 1 4.9855 4.2185 -1.7102 32 1 6.2394 6.2944 -2.0078 33 1 11.3977 5.9485 0.0082 34 1 8.9842 5.0534 1.0769 35 1 7.7197 2.9808 1.3511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132595708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:11:59 Heat of formation + Delta-G solvation = 84.629451 kcal Electronic energy + Delta-G solvation = -19196.754244 eV Core-core repulsion = 16194.751559 eV Total energy + Delta-G solvation = -3002.002684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51843 -38.29925 -36.15378 -34.94117 -33.48739 -32.25529 -30.31918 -29.32033 -28.78270 -26.32663 -24.91939 -23.65143 -22.14424 -21.06679 -20.47264 -18.04557 -17.68462 -17.43038 -15.99304 -15.38985 -15.30259 -15.04036 -14.75612 -14.41380 -13.95178 -13.73055 -13.29105 -13.11550 -12.78698 -12.24765 -12.20567 -12.02444 -11.69556 -11.28719 -11.11023 -10.93541 -10.62941 -10.32621 -10.28821 -9.90137 -9.62945 -9.37085 -8.72811 -8.53823 -7.75861 -7.71587 -6.90178 -6.81363 -4.43114 1.70620 1.81402 2.65429 2.90514 3.00828 3.02886 3.05867 3.12400 3.81658 3.86787 4.39702 4.56045 4.74390 5.14264 5.26168 5.48067 5.53604 5.55166 5.76751 5.96126 6.07106 6.08767 6.16437 6.48398 6.74115 6.86146 6.91620 7.01362 7.11432 7.33247 7.42541 7.44952 7.57963 7.69920 7.89972 8.09393 8.12260 8.29611 8.50048 8.76934 8.79776 8.88898 10.11881 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.057215 B = 0.003502 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.262411 B = 7993.005500 C = 8334.802493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.713 5.713 3 C 0.591 3.409 4 N -0.614 5.614 5 C 0.198 3.802 6 C -0.331 4.331 7 C 0.471 3.529 8 N -0.627 5.627 9 C 0.004 3.996 10 C -0.100 4.100 11 C -0.206 4.206 12 C 0.106 3.894 13 C -0.456 4.456 14 H 0.079 0.921 15 C 0.071 3.929 16 N -0.800 5.800 17 Si 0.914 3.086 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.143 4.143 22 C -0.109 4.109 23 N -0.636 5.636 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.410 0.590 28 H 0.160 0.840 29 H 0.151 0.849 30 H 0.402 0.598 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.281 0.719 34 H 0.126 0.874 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 -6.115 1.068 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.351 5.351 3 C 0.232 3.768 4 N -0.343 5.343 5 C 0.037 3.963 6 C -0.362 4.362 7 C 0.225 3.775 8 N -0.249 5.249 9 C -0.090 4.090 10 C -0.120 4.120 11 C -0.226 4.226 12 C 0.103 3.897 13 C -0.486 4.486 14 H 0.097 0.903 15 C -0.145 4.145 16 N -0.426 5.426 17 Si 0.738 3.262 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.163 4.163 22 C -0.129 4.129 23 N -0.370 5.370 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.245 0.755 28 H 0.177 0.823 29 H 0.169 0.831 30 H 0.237 0.763 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.143 0.857 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.831 -6.825 1.086 12.848 hybrid contribution 1.446 0.696 0.002 1.605 sum -9.385 -6.128 1.089 11.261 Atomic orbital electron populations 1.21366 0.78522 1.01157 1.02070 1.43697 1.06059 1.04018 1.81345 1.18829 0.84045 0.86607 0.87355 1.67850 1.40421 0.97591 1.28437 1.22505 0.91137 0.94823 0.87828 1.22272 0.96031 0.99625 1.18227 1.18229 0.85456 0.88310 0.85478 1.41489 1.00808 1.09341 1.73277 1.17068 0.98282 0.89416 1.04198 1.20301 0.99551 0.95351 0.96785 1.20693 1.00906 0.97918 1.03112 1.17697 0.90345 0.92834 0.88797 1.19568 0.92758 0.96714 1.39516 0.90278 1.25922 0.98239 0.97974 0.92414 1.69796 1.10312 1.27606 1.34846 0.86219 0.78538 0.81846 0.79584 1.19286 1.20263 1.18601 1.21030 1.01053 0.94191 1.00027 1.20345 0.96185 0.98098 0.98301 1.67142 1.07448 1.30517 1.31904 0.91309 0.92665 0.92645 0.75478 0.82318 0.83107 0.76262 0.88536 0.88335 0.90797 0.85663 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.08 10.68 59.85 0.64 1.72 16 2 N -0.71 -8.94 5.86 -69.13 -0.41 -9.34 16 3 C 0.59 9.73 8.42 -322.90 -2.72 7.01 16 4 N -0.61 -10.05 9.58 -14.01 -0.13 -10.18 16 5 C 0.20 3.10 11.29 -17.30 -0.20 2.90 16 6 C -0.33 -5.82 8.10 -39.08 -0.32 -6.14 16 7 C 0.47 8.75 7.45 -154.72 -1.15 7.59 16 8 N -0.63 -11.71 5.43 -9.73 -0.05 -11.76 16 9 C 0.00 0.08 5.87 -83.64 -0.49 -0.41 16 10 C -0.10 -2.12 7.30 -39.78 -0.29 -2.41 16 11 C -0.21 -4.73 9.74 -39.26 -0.38 -5.11 16 12 C 0.11 2.65 5.55 -106.79 -0.59 2.06 16 13 C -0.46 -11.43 9.04 -37.88 -0.34 -11.77 16 14 H 0.08 1.90 7.86 -52.48 -0.41 1.49 16 15 C 0.07 1.71 5.27 -17.34 -0.09 1.62 16 16 N -0.80 -19.77 10.81 55.54 0.60 -19.17 16 17 Si 0.91 17.96 29.57 -169.99 -5.03 12.94 16 18 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.14 -3.48 8.60 -39.26 -0.34 -3.82 16 22 C -0.11 -2.39 9.90 -39.77 -0.39 -2.78 16 23 N -0.64 -11.35 10.49 -13.14 -0.14 -11.49 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.41 4.42 8.94 -40.82 -0.37 4.05 16 28 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.15 2.75 5.52 -52.49 -0.29 2.46 16 30 H 0.40 6.86 8.94 -40.82 -0.37 6.50 16 31 H 0.10 1.93 6.68 -52.49 -0.35 1.58 16 32 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 34 H 0.13 3.16 6.21 -52.49 -0.33 2.84 16 35 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 301.33 15.07 4.54 4.54 Total: -1.00 -27.62 301.33 -11.06 -38.68 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -3.78 Total: 15.33 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -6.67 Total: -9.54 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.13 Total: -61.95 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.62 -11.06 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132595708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.310 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds