Wall clock time and date at job start Mon Mar 30 2020 22:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47069 * 2 1 4 4 H 1.08999 * 109.46717 * 302.56379 * 3 2 1 5 5 C 1.52995 * 109.47223 * 182.56151 * 3 2 1 6 6 C 1.52993 * 109.47323 * 65.00044 * 5 3 2 7 7 F 1.39899 * 109.47241 * 64.99944 * 6 5 3 8 8 F 1.39908 * 109.47204 * 184.99828 * 6 5 3 9 9 C 1.50700 * 109.47059 * 62.55645 * 3 2 1 10 10 O 1.21287 * 119.99790 * 111.07241 * 9 3 2 11 11 N 1.34780 * 120.00433 * 291.07945 * 9 3 2 12 12 C 1.46497 * 120.00221 * 176.10731 * 11 9 3 13 13 C 1.53001 * 109.47252 * 185.10850 * 12 11 9 14 14 C 1.50698 * 115.55027 * 305.05311 * 13 12 11 15 15 H 1.07991 * 120.00500 * 145.11462 * 14 13 12 16 16 C 1.37882 * 119.99613 * 325.11257 * 14 13 12 17 17 N 1.31513 * 120.00070 * 167.91124 * 16 14 13 18 18 Si 1.86799 * 120.00294 * 347.90587 * 16 14 13 19 19 H 1.48500 * 109.47222 * 94.52044 * 18 16 14 20 20 H 1.48499 * 109.47164 * 214.52437 * 18 16 14 21 21 H 1.48506 * 109.46938 * 334.52460 * 18 16 14 22 22 C 1.52990 * 117.50037 * 159.37477 * 13 12 11 23 23 C 1.53004 * 117.49893 * 90.71408 * 13 12 11 24 24 H 1.09002 * 109.46864 * 177.49388 * 1 2 3 25 25 H 1.08999 * 109.47249 * 57.49459 * 1 2 3 26 26 H 1.09003 * 109.47490 * 297.48449 * 1 2 3 27 27 H 1.09003 * 109.47671 * 119.99569 * 2 1 3 28 28 H 1.08998 * 109.47617 * 239.99848 * 2 1 3 29 29 H 1.09001 * 109.47087 * 185.00281 * 5 3 2 30 30 H 1.09006 * 109.47107 * 304.99427 * 5 3 2 31 31 H 1.09006 * 109.46875 * 304.99577 * 6 5 3 32 32 H 0.97005 * 119.99538 * 356.10341 * 11 9 3 33 33 H 1.08998 * 109.46807 * 305.10622 * 12 11 9 34 34 H 1.09004 * 109.47306 * 65.10747 * 12 11 9 35 35 H 0.96995 * 120.00515 * 179.97438 * 17 16 14 36 36 H 1.09007 * 117.50097 * 0.02562 * 22 13 12 37 37 H 1.09001 * 117.49897 * 145.01723 * 22 13 12 38 38 H 1.08991 * 117.50049 * 214.98072 * 23 13 12 39 39 H 1.09002 * 117.49341 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6395 1.9694 -0.8661 5 6 3.5686 1.4431 -0.0645 6 6 4.0229 0.8532 -1.4010 7 9 3.6082 1.6880 -2.4442 8 9 5.4179 0.7482 -1.4143 9 6 1.5900 2.1344 1.2609 10 8 2.4025 2.4392 2.1083 11 7 0.2848 2.4144 1.4471 12 6 -0.1641 3.0092 2.7083 13 6 -1.6910 3.1067 2.7113 14 6 -2.2976 3.8429 1.5447 15 1 -3.2457 3.5233 1.1383 16 6 -1.6420 4.9248 0.9961 17 7 -2.0388 5.4191 -0.1562 18 14 -0.1902 5.6885 1.8896 19 1 1.0727 5.1000 1.3758 20 1 -0.1827 7.1554 1.6585 21 1 -0.3064 5.4173 3.3451 22 6 -2.3881 3.2348 4.0671 23 6 -2.4734 1.9227 3.2833 24 1 -0.3633 -1.0267 -0.0449 25 1 -0.3634 0.5522 -0.8667 26 1 -0.3634 0.4743 0.9117 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.9356 2.4655 0.0250 30 1 3.9669 0.8413 0.7525 31 1 3.5828 -0.1357 -1.5300 32 1 -0.3572 2.2220 0.7459 33 1 0.1617 2.3853 3.5406 34 1 0.2638 4.0063 2.8124 35 1 -1.5779 6.1803 -0.5419 36 1 -1.7589 3.2501 4.9572 37 1 -3.2856 3.8514 4.1153 38 1 -3.4269 1.6767 2.8162 39 1 -1.9002 1.0743 3.6571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457786708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:15:54 Heat of formation + Delta-G solvation = -120.246413 kcal Electronic energy + Delta-G solvation = -22532.457247 eV Core-core repulsion = 18918.539673 eV Total energy + Delta-G solvation = -3613.917574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.99476 -46.99814 -39.81064 -37.23364 -35.51018 -33.62585 -32.33990 -31.04794 -27.67360 -26.28415 -25.07188 -23.12684 -21.71721 -21.38440 -19.79484 -19.14832 -17.66489 -17.56363 -16.85210 -16.66770 -15.94219 -15.51936 -15.35896 -14.86674 -14.04873 -13.93615 -13.67639 -13.56085 -13.37660 -13.29174 -13.10323 -12.89315 -12.59449 -12.34564 -12.13265 -11.76244 -11.35379 -11.12915 -11.04044 -10.86272 -10.70738 -10.69373 -10.55079 -9.99354 -9.73783 -9.43766 -9.26813 -9.04783 -8.50152 -8.17968 -6.31528 -4.26899 3.02016 3.25350 3.32690 3.36547 3.46762 3.86869 4.21873 4.26476 4.35815 4.51987 4.68892 4.84280 4.93073 5.02212 5.25899 5.40450 5.42248 5.50728 5.55297 5.59455 5.81633 5.89626 5.92273 5.95929 6.08645 6.11435 6.17007 6.37805 6.40403 6.44383 6.58762 6.79064 7.01095 7.10354 7.56622 8.11658 8.32714 8.70204 8.74474 9.32964 10.79282 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.005945 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.646239 B = 4708.612528 C = 5107.810808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.116 4.116 3 C -0.112 4.112 4 H 0.106 0.894 5 C -0.151 4.151 6 C 0.259 3.741 7 F -0.205 7.205 8 F -0.208 7.208 9 C 0.514 3.486 10 O -0.558 6.558 11 N -0.698 5.698 12 C 0.136 3.864 13 C -0.007 4.007 14 C -0.491 4.491 15 H 0.081 0.919 16 C 0.085 3.915 17 N -0.882 5.882 18 Si 0.884 3.116 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.263 1.263 22 C -0.200 4.200 23 C -0.187 4.187 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.415 0.585 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.268 0.732 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.457 -11.284 -1.248 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.153 4.153 3 C -0.133 4.133 4 H 0.124 0.876 5 C -0.189 4.189 6 C 0.206 3.794 7 F -0.186 7.186 8 F -0.190 7.190 9 C 0.300 3.700 10 O -0.437 6.437 11 N -0.351 5.351 12 C 0.013 3.987 13 C -0.008 4.008 14 C -0.528 4.528 15 H 0.099 0.901 16 C -0.120 4.120 17 N -0.518 5.518 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.228 1.228 21 H -0.190 1.190 22 C -0.239 4.239 23 C -0.224 4.224 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.255 0.745 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.043 -10.903 -0.838 13.574 hybrid contribution 0.486 0.601 0.079 0.777 sum 8.529 -10.302 -0.759 13.396 Atomic orbital electron populations 1.22148 0.94411 1.02626 1.04053 1.21576 0.97515 0.93700 1.02545 1.21339 0.95068 0.98247 0.98673 0.87600 1.22434 0.95887 1.05115 0.95487 1.22061 0.76013 0.94872 0.86497 1.92997 1.89864 1.74880 1.60854 1.92977 1.32038 1.96993 1.96977 1.20240 0.82787 0.79140 0.87881 1.90649 1.52953 1.54377 1.45757 1.46283 1.07981 1.61450 1.19347 1.21341 0.94814 0.97463 0.85091 1.19530 0.88718 0.98493 0.94093 1.20306 1.07709 1.12885 1.11907 0.90135 1.24946 0.96882 0.96285 0.93886 1.69904 1.41543 1.24447 1.15861 0.87019 0.83049 0.77472 0.80881 1.20151 1.22753 1.18964 1.23104 1.03802 1.00722 0.96257 1.22832 1.02394 0.91199 1.05978 0.92148 0.91690 0.90468 0.91084 0.91143 0.88727 0.87907 0.87050 0.74514 0.92507 0.92219 0.92224 0.91218 0.89332 0.89748 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.73 37.16 0.32 -1.71 16 2 C -0.12 -1.24 5.24 -26.73 -0.14 -1.38 16 3 C -0.11 -1.53 2.23 -91.77 -0.21 -1.74 16 4 H 0.11 1.46 7.82 -51.93 -0.41 1.05 16 5 C -0.15 -1.91 4.21 -26.74 -0.11 -2.02 16 6 C 0.26 2.83 5.16 37.15 0.19 3.03 16 7 F -0.20 -2.70 16.93 2.25 0.04 -2.66 16 8 F -0.21 -2.58 17.34 2.25 0.04 -2.54 16 9 C 0.51 9.46 6.91 -10.98 -0.08 9.38 16 10 O -0.56 -11.96 16.03 5.55 0.09 -11.87 16 11 N -0.70 -13.52 3.54 -60.29 -0.21 -13.73 16 12 C 0.14 2.89 4.35 -4.04 -0.02 2.87 16 13 C -0.01 -0.15 1.48 -155.66 -0.23 -0.39 16 14 C -0.49 -12.51 8.84 -34.44 -0.30 -12.81 16 15 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 16 C 0.08 2.26 5.35 -17.82 -0.10 2.17 16 17 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16 18 Si 0.88 21.84 23.81 -169.99 -4.05 17.79 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.26 -6.34 6.41 56.52 0.36 -5.98 16 22 C -0.20 -3.98 9.96 -26.70 -0.27 -4.24 16 23 C -0.19 -3.48 9.93 -26.69 -0.26 -3.75 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.06 5.46 -51.93 -0.28 0.77 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.57 6.35 -51.93 -0.33 0.24 16 29 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 30 H 0.10 1.23 8.13 -51.93 -0.42 0.80 16 31 H 0.11 0.85 6.29 -51.93 -0.33 0.52 16 32 H 0.42 7.81 5.85 -40.82 -0.24 7.57 16 33 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 34 H 0.06 1.41 2.55 -51.93 -0.13 1.28 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 37 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -29.76 316.61 -5.28 -35.04 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.54 Total: 7.96 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.20 Total: -10.59 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.56 Total: -37.91 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.08 Total: -5.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.05 Total: 17.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.76 -5.28 -35.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457786708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.206 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds