Wall clock time and date at job start Mon Mar 30 2020 22:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47129 * 2 1 4 4 C 1.53001 * 109.47282 * 120.00656 * 2 1 3 5 5 C 1.52992 * 109.47230 * 175.00171 * 4 2 1 6 6 N 1.46498 * 109.47198 * 180.02562 * 5 4 2 7 7 C 1.37836 * 126.54517 * 90.01775 * 6 5 4 8 8 C 1.40173 * 125.30448 * 359.97438 * 7 6 5 9 9 H 1.08001 * 119.99488 * 354.05522 * 8 7 6 10 10 C 1.40340 * 120.00655 * 174.05386 * 8 7 6 11 11 N 1.30590 * 119.99930 * 6.03369 * 10 8 7 12 12 Si 1.86799 * 120.00272 * 186.03006 * 10 8 7 13 13 H 1.48500 * 109.47249 * 94.98453 * 12 10 8 14 14 H 1.48506 * 109.47193 * 214.98383 * 12 10 8 15 15 H 1.48501 * 109.47356 * 334.98411 * 12 10 8 16 16 N 1.32479 * 109.39830 * 179.97438 * 7 6 5 17 17 C 1.33972 * 109.79146 * 0.02562 * 16 7 6 18 18 C 1.40518 * 133.17154 * 180.02562 * 17 16 7 19 19 C 1.36523 * 119.83623 * 179.27617 * 18 17 16 20 20 F 1.35098 * 119.65035 * 180.19172 * 19 18 17 21 21 C 1.39273 * 120.70856 * 0.55858 * 19 18 17 22 22 C 1.37945 * 120.54410 * 359.65390 * 21 19 18 23 23 C 1.38035 * 126.53581 * 269.70892 * 6 5 4 24 24 H 1.08998 * 109.47220 * 299.99606 * 1 2 3 25 25 H 1.08997 * 109.46936 * 59.99796 * 1 2 3 26 26 H 1.09000 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46916 * 239.99894 * 2 1 3 28 28 H 1.09007 * 109.47301 * 60.00691 * 3 2 1 29 29 H 1.09005 * 109.47193 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47662 * 300.00365 * 3 2 1 31 31 H 1.09000 * 109.46531 * 295.00089 * 4 2 1 32 32 H 1.09001 * 109.47483 * 54.99221 * 4 2 1 33 33 H 1.09000 * 109.47296 * 299.99449 * 5 4 2 34 34 H 1.09001 * 109.47663 * 59.99160 * 5 4 2 35 35 H 0.96994 * 120.00358 * 179.97438 * 11 10 8 36 36 H 1.07998 * 120.08478 * 359.94440 * 18 17 16 37 37 H 1.07996 * 119.73128 * 179.63674 * 21 19 18 38 38 H 1.08000 * 120.10355 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0531 -1.5224 2.3836 7 6 4.2361 -2.8808 2.5292 8 6 3.9810 -3.8429 1.5422 9 1 3.5206 -3.5510 0.6099 10 6 4.3239 -5.1853 1.7654 11 7 4.7709 -5.5594 2.9340 12 14 4.1407 -6.4371 0.3911 13 1 5.4385 -6.5918 -0.3139 14 1 3.7295 -7.7443 0.9636 15 1 3.1083 -5.9706 -0.5691 16 7 4.6905 -3.1356 3.7472 17 6 4.8205 -1.9911 4.4315 18 6 5.2520 -1.6943 5.7354 19 6 5.2910 -0.3971 6.1592 20 9 5.7102 -0.1156 7.4123 21 6 4.8961 0.6387 5.3161 22 6 4.4644 0.3726 4.0332 23 6 4.4234 -0.9370 3.5776 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9563 0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.7517 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2951 33 1 3.8532 -1.3940 0.3001 34 1 3.9995 0.1674 1.1419 35 1 5.0075 -6.4873 3.0885 36 1 5.5623 -2.4894 6.3971 37 1 4.9277 1.6587 5.6696 38 1 4.1594 1.1813 3.3856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071743903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:14:46 Heat of formation + Delta-G solvation = -5.164770 kcal Electronic energy + Delta-G solvation = -21166.506330 eV Core-core repulsion = 17922.922384 eV Total energy + Delta-G solvation = -3243.583946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.00951 -40.51522 -36.89646 -35.79210 -33.65327 -32.73620 -29.71138 -28.79890 -27.76207 -27.13821 -25.89819 -23.33257 -21.63868 -20.93250 -19.88910 -19.59416 -17.25317 -16.76974 -16.10465 -15.52074 -15.18028 -14.82175 -14.76656 -14.35477 -14.03438 -13.67087 -13.40011 -13.09197 -12.99925 -12.57594 -12.32447 -12.22092 -11.84477 -11.74596 -11.55424 -11.45386 -11.19132 -10.93437 -10.85957 -10.65158 -10.48366 -10.35828 -10.27775 -10.25953 -9.34890 -9.13012 -8.04541 -7.27269 -7.00258 -6.78920 -4.75369 2.03450 2.42863 2.92055 2.96627 3.00444 3.69775 3.92982 4.01373 4.73988 4.92813 4.99445 5.01557 5.18158 5.33265 5.36282 5.46757 5.59442 5.67804 5.75637 5.80877 5.83327 5.85736 5.93258 6.06189 6.11005 6.20798 6.22994 6.28019 6.42666 6.55146 6.63616 6.68381 6.88682 6.97298 7.14491 7.33581 7.60842 7.75842 7.85738 8.16696 8.51053 8.89150 9.80276 10.09975 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.010141 B = 0.008046 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.520689 B = 3478.984152 C = 5991.740826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.131 4.131 5 C 0.132 3.868 6 N -0.538 5.538 7 C 0.423 3.577 8 C -0.434 4.434 9 H 0.090 0.910 10 C 0.076 3.924 11 N -0.711 5.711 12 Si 0.918 3.082 13 H -0.267 1.267 14 H -0.273 1.273 15 H -0.260 1.260 16 N -0.534 5.534 17 C 0.136 3.864 18 C -0.168 4.168 19 C 0.091 3.909 20 F -0.159 7.159 21 C -0.215 4.215 22 C -0.076 4.076 23 C -0.009 4.009 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.281 0.719 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 7.367 -6.122 10.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.170 4.170 5 C 0.008 3.992 6 N -0.233 5.233 7 C 0.188 3.812 8 C -0.471 4.471 9 H 0.108 0.892 10 C -0.152 4.152 11 N -0.332 5.332 12 Si 0.742 3.258 13 H -0.192 1.192 14 H -0.198 1.198 15 H -0.184 1.184 16 N -0.258 5.258 17 C 0.006 3.994 18 C -0.191 4.191 19 C 0.070 3.930 20 F -0.138 7.138 21 C -0.237 4.237 22 C -0.098 4.098 23 C -0.117 4.117 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.299 6.422 -5.769 9.644 hybrid contribution -0.203 0.339 -0.665 0.773 sum -4.502 6.761 -6.433 10.362 Atomic orbital electron populations 1.21815 0.95303 1.01790 1.01341 1.21065 0.95717 0.96125 0.98420 1.21907 1.01187 0.96103 1.01452 1.22049 0.95856 1.01447 0.97602 1.21365 0.93677 0.96801 0.87382 1.45534 1.60020 1.07284 1.10486 1.20453 0.89693 0.79017 0.92008 1.18561 1.37488 0.90688 1.00352 0.89208 1.25904 0.93674 0.99091 0.96568 1.69967 1.24078 1.18203 1.20969 0.86130 0.79683 0.79350 0.80667 1.19221 1.19778 1.18373 1.71423 1.29920 1.21385 1.03056 1.19173 0.96744 0.90484 0.93006 1.19546 1.09463 0.94393 0.95685 1.16825 1.03049 0.93495 0.79669 1.91375 1.88596 1.94584 1.39268 1.20196 1.11487 0.97365 0.94628 1.19374 1.02713 0.92580 0.95091 1.18905 1.08663 0.94890 0.89246 0.92833 0.92979 0.92593 0.91057 0.92737 0.92486 0.92990 0.91903 0.90961 0.90053 0.91219 0.90739 0.86141 0.86587 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.09 -1.11 2.92 -90.62 -0.26 -1.38 16 3 C -0.15 -1.58 8.95 37.15 0.33 -1.24 16 4 C -0.13 -1.99 5.01 -26.73 -0.13 -2.12 16 5 C 0.13 2.25 5.64 -4.05 -0.02 2.23 16 6 N -0.54 -12.04 2.86 -113.47 -0.32 -12.37 16 7 C 0.42 10.97 7.41 -155.69 -1.15 9.82 16 8 C -0.43 -10.63 8.95 -38.07 -0.34 -10.97 16 9 H 0.09 1.98 7.19 -52.49 -0.38 1.60 16 10 C 0.08 1.81 5.49 -17.29 -0.09 1.72 16 11 N -0.71 -18.35 11.88 55.57 0.66 -17.69 16 12 Si 0.92 17.29 29.57 -169.99 -5.03 12.26 16 13 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 14 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 15 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 16 N -0.53 -14.99 9.35 -10.31 -0.10 -15.09 16 17 C 0.14 3.49 7.20 -84.89 -0.61 2.88 16 18 C -0.17 -3.95 10.04 -39.34 -0.39 -4.35 16 19 C 0.09 1.93 7.24 -39.82 -0.29 1.65 16 20 F -0.16 -3.20 17.25 2.25 0.04 -3.16 16 21 C -0.22 -4.19 10.01 -39.30 -0.39 -4.58 16 22 C -0.08 -1.50 10.04 -39.51 -0.40 -1.90 16 23 C -0.01 -0.22 6.88 -83.71 -0.58 -0.79 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.06 0.61 6.56 -51.93 -0.34 0.26 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.35 7.39 -51.93 -0.38 0.97 16 34 H 0.07 1.07 6.56 -51.93 -0.34 0.73 16 35 H 0.28 6.53 8.29 -40.82 -0.34 6.20 16 36 H 0.12 2.74 8.06 -52.49 -0.42 2.32 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -28.58 322.51 -9.11 -37.70 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.23 Total: 3.76 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.00 Total: -10.27 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.24 Total: -45.15 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.58 -9.11 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071743903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.531 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds