Wall clock time and date at job start Mon Mar 30 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99729 * 2 1 4 4 H 1.48497 * 109.47363 * 270.00454 * 3 2 1 5 5 H 1.48507 * 109.47154 * 30.00253 * 3 2 1 6 6 H 1.48495 * 109.47243 * 150.00117 * 3 2 1 7 7 C 1.37873 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99776 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46792 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46544 * 180.02562 * 10 9 7 12 12 O 1.42909 * 109.46917 * 180.02562 * 11 10 9 13 13 C 1.35678 * 117.00111 * 180.02562 * 12 11 10 14 14 C 1.38609 * 120.16314 * 359.97438 * 13 12 11 15 15 C 1.38120 * 120.11549 * 180.02562 * 14 13 12 16 16 C 1.38582 * 120.43946 * 359.97438 * 15 14 13 17 17 C 1.37741 * 120.32071 * 359.97438 * 16 15 14 18 18 C 1.39954 * 119.88035 * 0.02715 * 17 16 15 19 19 C 1.46901 * 120.21419 * 179.97438 * 18 17 16 20 20 C 1.35113 * 120.00285 * 45.15606 * 19 18 17 21 21 C 1.41767 * 119.99692 * 9.78863 * 20 19 18 22 22 O 1.21648 * 120.00316 * 7.05478 * 21 20 19 23 23 O 1.34938 * 119.99785 * 187.05083 * 21 20 19 24 24 H 0.96996 * 120.00199 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46984 * 60.00317 * 9 7 2 26 26 H 1.09001 * 109.47372 * 300.00068 * 9 7 2 27 27 H 1.08997 * 109.47364 * 60.00731 * 10 9 7 28 28 H 1.09001 * 109.47259 * 300.00189 * 10 9 7 29 29 H 1.08995 * 109.47703 * 60.00094 * 11 10 9 30 30 H 1.09001 * 109.47224 * 299.99877 * 11 10 9 31 31 H 1.08002 * 119.94121 * 0.02846 * 14 13 12 32 32 H 1.07999 * 119.78390 * 179.70638 * 15 14 13 33 33 H 1.07999 * 119.84178 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.05808 * 179.97438 * 17 16 15 35 35 H 1.07992 * 119.99681 * 225.15991 * 19 18 17 36 36 H 1.07999 * 120.00120 * 189.78343 * 20 19 18 37 37 H 0.96693 * 113.99920 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5117 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6362 -0.0009 12 8 6.0281 -3.9836 -0.0014 13 6 7.3732 -4.1613 -0.0009 14 6 8.2206 -3.0644 -0.0005 15 6 9.5898 -3.2465 -0.0005 16 6 10.1283 -4.5234 -0.0004 17 6 9.3029 -5.6261 0.0003 18 6 7.9136 -5.4572 0.0002 19 6 7.0265 -6.6281 0.0004 20 6 7.2762 -7.6648 0.8301 21 6 8.2620 -7.5417 1.8414 22 8 8.7918 -6.4660 2.0467 23 8 8.6125 -8.6176 2.5765 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8889 26 1 3.8747 -0.6798 -0.8911 27 1 3.6581 -3.1504 -0.8907 28 1 3.6586 -3.1501 0.8892 29 1 5.9150 -2.1224 0.8890 30 1 5.9150 -2.1225 -0.8910 31 1 7.8096 -2.0657 -0.0001 32 1 10.2451 -2.3880 -0.0050 33 1 11.2003 -4.6546 -0.0008 34 1 9.7271 -6.6193 -0.0001 35 1 6.1748 -6.6603 -0.6628 36 1 6.7248 -8.5872 0.7229 37 1 9.2918 -8.4361 3.2403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103349621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:15:40 Heat of formation + Delta-G solvation = -107.318974 kcal Electronic energy + Delta-G solvation = -20344.439261 eV Core-core repulsion = 17051.760036 eV Total energy + Delta-G solvation = -3292.679225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69495 -40.80044 -38.58648 -37.04046 -35.98085 -35.00695 -33.87366 -31.19885 -30.81709 -29.06173 -26.07078 -25.26094 -23.31330 -22.84640 -21.91139 -20.41793 -19.36444 -19.07956 -18.81408 -17.64931 -17.20904 -16.95028 -16.41101 -16.32780 -16.02340 -15.38596 -15.22211 -14.81881 -14.70291 -14.52484 -14.37231 -13.73143 -13.66036 -13.38748 -12.91548 -12.70683 -12.52392 -12.44105 -12.16996 -11.88555 -11.86715 -11.74847 -11.50877 -11.41689 -11.34724 -10.91363 -10.77809 -9.40145 -8.98468 -8.30449 -6.36003 -0.45559 0.54491 0.73241 1.36836 1.39044 1.50575 2.08280 2.18081 2.35839 2.53060 2.85954 3.04726 3.66672 3.86654 3.99915 4.03086 4.17158 4.26506 4.32557 4.41466 4.49130 4.50941 4.61117 4.75535 4.83181 4.93255 4.95554 5.06827 5.22897 5.39447 5.43316 5.49550 5.50961 5.59257 5.60525 5.61519 5.85689 6.25396 6.44240 6.72209 7.02835 7.28567 8.86417 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025819 B = 0.003457 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.194162 B = 8096.902940 C = 8837.145882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.031 0.969 9 C -0.007 4.007 10 C -0.093 4.093 11 C 0.068 3.932 12 O -0.326 6.326 13 C 0.135 3.865 14 C -0.234 4.234 15 C -0.065 4.065 16 C -0.176 4.176 17 C -0.011 4.011 18 C -0.142 4.142 19 C 0.027 3.973 20 C -0.227 4.227 21 C 0.506 3.494 22 O -0.535 6.535 23 O -0.507 6.507 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.031 -13.361 0.517 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.049 0.951 9 C -0.044 4.044 10 C -0.131 4.131 11 C -0.007 4.007 12 O -0.240 6.240 13 C 0.089 3.911 14 C -0.253 4.253 15 C -0.083 4.083 16 C -0.194 4.194 17 C -0.030 4.030 18 C -0.142 4.142 19 C 0.009 3.991 20 C -0.245 4.245 21 C 0.354 3.646 22 O -0.428 6.428 23 O -0.319 6.319 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 23.557 -13.223 0.293 27.016 hybrid contribution -0.070 0.973 0.569 1.129 sum 23.487 -12.250 0.862 26.504 Atomic orbital electron populations 1.70072 1.08428 1.28304 1.52410 1.26063 0.95670 1.03730 0.93942 0.85613 0.79568 0.77829 0.79381 1.18875 1.21071 1.16599 1.21436 0.91963 0.93242 1.50834 0.95074 1.19429 0.94079 0.93597 0.97292 1.21287 0.91496 0.98348 1.01958 1.22951 0.95073 0.80570 1.02073 1.85959 1.19207 1.30810 1.87999 1.19390 0.82509 0.94030 0.95201 1.21411 0.95143 0.98248 1.10473 1.21347 0.93938 0.98396 0.94610 1.21177 1.00842 0.92073 1.05346 1.21010 0.90582 0.99372 0.91991 1.18511 0.94193 0.90517 1.11020 1.22668 0.94106 0.88938 0.93420 1.21501 1.02621 1.02475 0.97924 1.20081 0.81223 0.81439 0.81868 1.91043 1.54384 1.28813 1.68601 1.85056 1.58773 1.38439 1.49601 0.92403 0.95566 0.95341 0.92214 0.92804 0.91518 0.90686 0.84626 0.83353 0.83669 0.85451 0.82524 0.81436 0.71873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 43.51 27.47 68.60 1.88 45.39 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 7 C -0.54 -31.05 9.66 25.60 0.25 -30.80 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 10 C -0.09 -3.66 5.52 30.59 0.17 -3.49 16 11 C 0.07 2.16 4.74 71.98 0.34 2.50 16 12 O -0.33 -10.50 9.59 -89.96 -0.86 -11.36 16 13 C 0.13 3.93 6.71 22.89 0.15 4.08 16 14 C -0.23 -6.05 9.03 22.33 0.20 -5.84 16 15 C -0.07 -1.39 10.03 22.32 0.22 -1.17 16 16 C -0.18 -3.65 10.02 22.23 0.22 -3.42 16 17 C -0.01 -0.26 6.61 22.57 0.15 -0.11 16 18 C -0.14 -3.69 4.48 -20.07 -0.09 -3.78 16 19 C 0.03 0.59 9.35 23.82 0.22 0.81 16 20 C -0.23 -4.24 9.87 22.42 0.22 -4.02 16 21 C 0.51 10.42 7.16 68.69 0.49 10.91 16 22 O -0.54 -14.14 12.70 19.35 0.25 -13.89 16 23 O -0.51 -7.56 13.54 -58.54 -0.79 -8.35 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 26 H 0.03 1.22 7.57 -2.39 -0.02 1.21 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 2.01 7.66 -2.39 -0.02 1.99 16 30 H 0.07 2.15 7.66 -2.39 -0.02 2.13 16 31 H 0.14 3.23 6.30 -2.91 -0.02 3.21 16 32 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.13 2.49 7.09 -2.91 -0.02 2.47 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.42 2.95 8.98 -74.06 -0.67 2.29 16 Total: -1.00 -73.05 317.99 4.27 -68.77 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.36 Total: 12.95 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 3.14 Total: -33.89 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.30 Total: -59.62 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.41 Total: -33.60 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -73.05 4.27 -68.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103349621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.546 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds