Wall clock time and date at job start Mon Mar 30 2020 22:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99618 * 2 1 4 4 H 1.08993 * 109.47485 * 0.02562 * 3 2 1 5 5 C 1.53006 * 109.46570 * 119.99889 * 3 2 1 6 6 O 1.45193 * 109.47278 * 239.99684 * 3 2 1 7 7 C 1.34225 * 117.00200 * 150.00358 * 6 3 2 8 8 O 1.20826 * 120.00219 * 0.02562 * 7 6 3 9 9 C 1.50704 * 120.00400 * 180.02562 * 7 6 3 10 10 C 1.50700 * 109.47425 * 179.97438 * 9 7 6 11 11 C 1.38300 * 119.93315 * 269.72893 * 10 9 7 12 12 C 1.38096 * 120.06749 * 179.72534 * 11 10 9 13 13 C 1.38875 * 119.93194 * 0.56777 * 12 11 10 14 14 O 1.35748 * 120.06885 * 179.68630 * 13 12 11 15 15 C 1.34834 * 117.00035 * 174.48700 * 14 13 12 16 16 H 1.07996 * 120.00054 * 5.05024 * 15 14 13 17 17 C 1.38652 * 120.00095 * 185.05409 * 15 14 13 18 18 N 1.31559 * 119.99735 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99981 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46916 * 90.00188 * 19 17 15 21 21 H 1.48503 * 109.46936 * 209.99935 * 19 17 15 22 22 H 1.48501 * 109.47421 * 329.99868 * 19 17 15 23 23 C 1.38881 * 119.86242 * 359.70304 * 13 12 11 24 24 C 1.38099 * 119.92685 * 0.02562 * 23 13 12 25 25 H 1.07999 * 119.99538 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99920 * 359.72818 * 1 2 3 27 27 H 1.08000 * 120.00337 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47616 * 299.99692 * 5 3 2 29 29 H 1.09002 * 109.46816 * 60.00305 * 5 3 2 30 30 H 1.09000 * 109.46656 * 179.97438 * 5 3 2 31 31 H 1.09005 * 109.46780 * 300.00278 * 9 7 6 32 32 H 1.09002 * 109.47341 * 59.99622 * 9 7 6 33 33 H 1.08005 * 119.95997 * 359.97438 * 11 10 9 34 34 H 1.08001 * 120.03028 * 180.27040 * 12 11 10 35 35 H 0.97005 * 119.99229 * 179.97438 * 18 17 15 36 36 H 1.07998 * 120.03683 * 179.97438 * 23 13 12 37 37 H 1.08005 * 119.95971 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 1.2493 6 8 2.8983 1.3822 -1.1854 7 6 3.1389 2.6054 -1.6830 8 8 2.6680 3.5796 -1.1455 9 6 3.9965 2.7637 -2.9121 10 6 4.1091 4.2254 -3.2612 11 6 3.1893 4.8033 -4.1172 12 6 3.2866 6.1438 -4.4345 13 6 4.3162 6.9089 -3.9025 14 8 4.4182 8.2253 -4.2177 15 6 5.3700 8.9357 -3.5793 16 1 6.0616 8.4378 -2.9158 17 6 5.4610 10.3053 -3.7747 18 7 4.6189 10.9118 -4.5833 19 14 6.7793 11.2895 -2.8898 20 1 8.0051 11.3393 -3.7265 21 1 6.2881 12.6700 -2.6487 22 1 7.0925 10.6416 -1.5908 23 6 5.2416 6.3243 -3.0477 24 6 5.1356 4.9846 -2.7298 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0044 27 1 1.8501 -0.9353 -0.0004 28 1 2.3165 1.3285 2.1393 29 1 3.6514 0.5577 1.2493 30 1 3.4884 2.3300 1.2491 31 1 4.9895 2.3588 -2.7168 32 1 3.5420 2.2258 -3.7440 33 1 2.3918 4.2064 -4.5346 34 1 2.5654 6.5955 -5.0996 35 1 4.6824 11.8701 -4.7197 36 1 6.0437 6.9166 -2.6327 37 1 5.8552 4.5294 -2.0653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187561395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:17:09 Heat of formation + Delta-G solvation = -73.287876 kcal Electronic energy + Delta-G solvation = -20207.807654 eV Core-core repulsion = 16916.604128 eV Total energy + Delta-G solvation = -3291.203526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50404 -38.99478 -37.22856 -36.29386 -34.48032 -32.50313 -31.50191 -30.25146 -30.15636 -26.95590 -25.24373 -23.91851 -21.99100 -21.45804 -20.28234 -20.05593 -17.99803 -17.68702 -17.00920 -16.50580 -16.06877 -14.87534 -14.68246 -14.53482 -14.33690 -14.26226 -13.63164 -13.54533 -13.32541 -13.02232 -12.71796 -12.55281 -12.41968 -12.02930 -11.83294 -11.53735 -11.27748 -11.11510 -10.88008 -10.79536 -10.71828 -10.62667 -10.43134 -10.24002 -9.88192 -9.33414 -8.83013 -8.16974 -7.19824 -6.45118 -4.03685 1.67573 2.20302 2.24110 2.41406 3.02896 3.13638 3.15465 3.19381 3.97055 4.39952 4.55980 4.72316 4.82571 4.98421 5.08222 5.09395 5.20579 5.23646 5.30902 5.41193 5.57792 5.62896 5.66788 5.71761 5.83346 5.85368 6.18596 6.20570 6.30018 6.40366 6.54967 6.70004 6.90162 7.04630 7.22286 7.34438 7.43862 7.81505 7.96010 8.00084 9.00512 9.70226 10.72863 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.032193 B = 0.003214 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.553978 B = 8710.911720 C = 9009.204442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.154 4.154 3 C 0.110 3.890 4 H 0.087 0.913 5 C -0.165 4.165 6 O -0.357 6.357 7 C 0.454 3.546 8 O -0.491 6.491 9 C -0.050 4.050 10 C -0.183 4.183 11 C -0.057 4.057 12 C -0.192 4.192 13 C 0.159 3.841 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.233 4.233 24 C -0.053 4.053 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.270 0.730 36 H 0.128 0.872 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -19.674 7.275 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.055 3.945 4 H 0.105 0.895 5 C -0.223 4.223 6 O -0.276 6.276 7 C 0.296 3.704 8 O -0.376 6.376 9 C -0.088 4.088 10 C -0.184 4.184 11 C -0.075 4.075 12 C -0.211 4.211 13 C 0.105 3.895 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.252 4.252 24 C -0.071 4.071 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.258 -18.971 7.232 20.562 hybrid contribution 0.585 0.532 0.652 1.025 sum -2.674 -18.439 7.884 20.231 Atomic orbital electron populations 1.24008 0.95670 1.02535 0.98333 1.22763 0.95610 0.97518 1.01272 1.21709 0.92340 0.96796 0.83606 0.89475 1.22146 1.00417 1.03172 0.96517 1.86594 1.64716 1.33262 1.42989 1.24235 0.79645 0.80759 0.85756 1.90692 1.47874 1.39673 1.59402 1.20103 0.99379 0.96509 0.92768 1.18643 1.00715 0.93178 1.05852 1.20426 0.96735 0.93865 0.96480 1.20159 1.00310 0.93591 1.07038 1.19396 0.92599 0.85679 0.91816 1.83977 1.51761 1.15036 1.57147 1.21343 1.09517 0.89805 1.26124 0.89016 1.25300 0.98373 0.95784 0.97064 1.70045 1.35128 1.10510 1.34009 0.85705 0.79488 0.78875 0.79331 1.19853 1.20234 1.19167 1.21110 1.03188 0.95415 1.05528 1.20530 0.96359 0.93431 0.96829 0.87512 0.88198 0.86365 0.90809 0.91500 0.91535 0.87842 0.87818 0.87200 0.86408 0.91996 0.85462 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 14.32 29.01 0.42 -0.87 16 2 C -0.15 -1.35 9.16 -36.02 -0.33 -1.68 16 3 C 0.11 1.23 2.93 -27.88 -0.08 1.15 16 4 H 0.09 1.10 6.80 -51.93 -0.35 0.74 16 5 C -0.17 -1.62 9.53 37.16 0.35 -1.26 16 6 O -0.36 -4.59 9.86 -39.24 -0.39 -4.98 16 7 C 0.45 6.71 7.92 36.01 0.29 7.00 16 8 O -0.49 -9.07 15.25 -18.75 -0.29 -9.36 16 9 C -0.05 -0.66 5.94 -29.03 -0.17 -0.83 16 10 C -0.18 -3.18 4.38 -104.58 -0.46 -3.64 16 11 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 12 C -0.19 -4.16 9.99 -39.40 -0.39 -4.56 16 13 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 14 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 15 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 16 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 19 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 24 C -0.05 -1.00 9.69 -39.61 -0.38 -1.39 16 25 H 0.11 0.61 8.06 -52.49 -0.42 0.18 16 26 H 0.10 0.77 7.83 -52.49 -0.41 0.36 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 37 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -32.77 328.44 -6.25 -39.02 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.69 Total: 3.72 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.57 Total: -19.18 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.76 Total: -24.75 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.67 Total: -19.44 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.77 -6.25 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187561395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.269 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds