Wall clock time and date at job start Mon Mar 30 2020 22:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47018 * 2 1 4 4 C 1.52995 * 109.47357 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47357 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47018 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47189 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47116 * 180.02562 * 7 6 5 9 9 C 1.39851 * 119.99710 * 180.02562 * 8 7 6 10 10 C 1.39605 * 119.84248 * 0.28679 * 9 8 7 11 11 C 1.38059 * 120.55304 * 180.26637 * 10 9 8 12 12 C 1.38735 * 120.21526 * 359.44114 * 11 10 9 13 13 N 1.38864 * 120.16262 * 180.25268 * 12 11 10 14 14 C 1.41568 * 119.67632 * 0.28368 * 12 11 10 15 15 C 1.41023 * 120.26859 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00199 * 333.63040 * 15 14 12 17 17 C 1.39884 * 119.99897 * 153.62098 * 15 14 12 18 18 N 1.30895 * 120.00173 * 343.98882 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 163.98438 * 17 15 14 20 20 H 1.48496 * 109.47096 * 90.00606 * 19 17 15 21 21 H 1.48501 * 109.46980 * 210.00142 * 19 17 15 22 22 H 1.48501 * 109.47439 * 330.00337 * 19 17 15 23 23 C 1.38003 * 119.84216 * 180.02562 * 9 8 7 24 24 H 1.08995 * 109.47411 * 60.00189 * 1 2 3 25 25 H 1.09001 * 109.46720 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46784 * 299.99768 * 1 2 3 27 27 H 1.08995 * 109.47069 * 239.99974 * 2 1 3 28 28 H 1.09005 * 109.46891 * 119.99641 * 2 1 3 29 29 H 1.09001 * 109.47523 * 59.99775 * 3 2 1 30 30 H 1.09009 * 109.46978 * 300.00334 * 3 2 1 31 31 H 1.09001 * 109.47271 * 59.99274 * 4 3 2 32 32 H 1.09009 * 109.47066 * 299.99933 * 4 3 2 33 33 H 1.08995 * 109.47222 * 59.99720 * 5 4 3 34 34 H 1.09005 * 109.46996 * 299.99229 * 5 4 3 35 35 H 1.09002 * 109.46784 * 60.00232 * 6 5 4 36 36 H 1.08995 * 109.47411 * 299.99811 * 6 5 4 37 37 H 1.09001 * 109.47040 * 59.99966 * 7 6 5 38 38 H 1.08995 * 109.47187 * 300.00434 * 7 6 5 39 39 H 0.96996 * 119.99954 * 359.97438 * 8 7 6 40 40 H 1.07999 * 119.72861 * 0.02562 * 10 9 8 41 41 H 1.07993 * 119.89324 * 179.72391 * 11 10 9 42 42 H 0.97001 * 120.00352 * 0.02562 * 13 12 11 43 43 H 0.97000 * 120.00063 * 180.02562 * 13 12 11 44 44 H 0.97004 * 120.00145 * 179.97438 * 18 17 15 45 45 H 1.08004 * 120.11059 * 0.03494 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8851 -0.0013 7 6 6.1199 4.3276 -0.0026 8 7 7.5849 4.3276 -0.0032 9 6 8.2841 5.5387 -0.0039 10 6 7.5828 6.7458 0.0021 11 6 8.2581 7.9499 -0.0039 12 6 9.6453 7.9724 -0.0044 13 7 10.3234 9.1842 -0.0053 14 6 10.3660 6.7540 -0.0047 15 6 11.7762 6.7623 -0.0047 16 1 12.3113 7.6035 -0.4198 17 6 12.4820 5.6810 0.5333 18 7 11.8707 4.8202 1.3070 19 14 14.2970 5.4654 0.1473 20 1 15.1078 6.1807 1.1652 21 1 14.6392 4.0205 0.1681 22 1 14.5867 6.0235 -1.1980 23 6 9.6642 5.5350 -0.0050 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6765 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.7169 3.3992 0.8886 34 1 3.7163 3.3986 -0.8914 35 1 5.9732 2.3709 -0.8911 36 1 5.9733 2.3717 0.8889 37 1 5.7566 4.8422 0.8870 38 1 5.7566 4.8406 -0.8929 39 1 8.0699 3.4876 -0.0024 40 1 6.5028 6.7377 0.0077 41 1 7.7048 8.8773 -0.0037 42 1 9.8273 10.0177 -0.0051 43 1 11.2933 9.1972 -0.0060 44 1 12.3600 4.0702 1.6798 45 1 10.2035 4.5992 -0.0059 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703780708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 22:16:53 Heat of formation + Delta-G solvation = -18.050699 kcal Electronic energy + Delta-G solvation = -20316.814275 eV Core-core repulsion = 17331.964953 eV Total energy + Delta-G solvation = -2984.849322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.190 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.98531 -36.96293 -35.54579 -33.66345 -33.40489 -31.64319 -29.50054 -29.33435 -26.74958 -25.01297 -24.51080 -22.41504 -21.30577 -21.15010 -20.45972 -19.58273 -17.01379 -16.20477 -16.02004 -15.42529 -15.09130 -14.94368 -14.64043 -14.33110 -14.12783 -13.71816 -13.34121 -12.85753 -12.48208 -12.43784 -12.23327 -11.96580 -11.81500 -11.75730 -11.40013 -11.31489 -11.21308 -11.08911 -10.97651 -10.91164 -10.79122 -10.55370 -10.47225 -10.34469 -9.82168 -9.65305 -9.28519 -9.02143 -7.71517 -7.18378 -6.58418 -5.49297 -4.03480 2.93372 3.14651 3.18974 3.33682 3.51836 4.05672 4.33387 4.67211 4.68186 4.84177 4.85406 4.97034 5.10606 5.25427 5.27304 5.45678 5.47602 5.53218 5.58700 5.65289 5.74484 5.86255 5.86889 5.89785 5.94009 5.94875 6.06147 6.14986 6.21658 6.40441 6.42482 6.44908 6.67634 7.15821 7.19290 7.35122 7.52960 7.74390 7.92085 8.03843 8.16146 8.49426 8.79721 8.94334 8.98262 9.03744 9.29293 9.37784 10.40760 Molecular weight = 276.19amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.002770 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.031148 B =10105.375945 C =11130.694575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.139 3.861 8 N -0.765 5.765 9 C 0.177 3.823 10 C -0.255 4.255 11 C -0.153 4.153 12 C 0.084 3.916 13 N -0.889 5.889 14 C 0.095 3.905 15 C -0.465 4.465 16 H 0.071 0.929 17 C 0.076 3.924 18 N -0.801 5.801 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.201 4.201 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.387 0.613 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.374 0.626 43 H 0.388 0.612 44 H 0.274 0.726 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 -6.833 -1.823 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.154 4.154 6 C -0.168 4.168 7 C 0.014 3.986 8 N -0.400 5.400 9 C 0.078 3.922 10 C -0.279 4.279 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.496 4.496 16 H 0.089 0.911 17 C -0.140 4.140 18 N -0.428 5.428 19 Si 0.726 3.274 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.225 4.225 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.220 0.780 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.199 0.801 43 H 0.216 0.784 44 H 0.085 0.915 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.195 -7.054 -1.679 15.940 hybrid contribution 1.158 -0.141 -0.003 1.167 sum -13.037 -7.195 -1.682 14.985 Atomic orbital electron populations 1.21784 0.96080 1.01421 1.01773 1.21549 0.95690 0.97200 1.01942 1.21636 0.95676 0.96494 1.02038 1.21609 0.95049 0.97045 1.02031 1.21505 0.95065 0.96578 1.02211 1.21770 0.95389 0.97321 1.02283 1.20981 0.82591 0.95181 0.99872 1.44342 1.03342 1.05710 1.86577 1.17528 0.91259 0.84572 0.98841 1.19615 0.96388 0.91091 1.20789 1.19705 0.91960 0.95856 1.10207 1.17863 0.90496 0.86455 1.06841 1.41802 1.08057 1.04125 1.89187 1.16970 0.92789 0.88884 0.92382 1.19107 0.91267 1.03431 1.35772 0.91143 1.25746 1.00058 0.95162 0.92998 1.69882 1.37899 1.11909 1.23084 0.86449 0.83096 0.78034 0.79818 1.19884 1.20400 1.18807 1.20480 0.89875 0.98535 1.13629 0.92802 0.92952 0.92800 0.92133 0.92119 0.92052 0.92073 0.92088 0.92058 0.91887 0.91907 0.91804 0.91728 0.93793 0.93812 0.78035 0.89752 0.89799 0.80135 0.78362 0.91498 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 4 C -0.12 -1.09 5.21 -26.73 -0.14 -1.22 16 5 C -0.12 -1.20 5.21 -26.73 -0.14 -1.34 16 6 C -0.13 -1.62 5.33 -26.73 -0.14 -1.76 16 7 C 0.14 2.24 4.91 -4.04 -0.02 2.22 16 8 N -0.76 -15.20 5.74 -58.64 -0.34 -15.53 16 9 C 0.18 4.24 6.64 -83.78 -0.56 3.69 16 10 C -0.25 -5.98 9.31 -39.14 -0.36 -6.35 16 11 C -0.15 -3.60 9.86 -39.46 -0.39 -3.99 16 12 C 0.08 2.09 6.79 -83.22 -0.56 1.53 16 13 N -0.89 -18.59 8.98 32.75 0.29 -18.30 16 14 C 0.09 2.57 5.57 -106.66 -0.59 1.98 16 15 C -0.46 -12.39 8.48 -37.91 -0.32 -12.71 16 16 H 0.07 1.78 6.71 -52.49 -0.35 1.43 16 17 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 18 N -0.80 -21.27 10.97 55.54 0.61 -20.66 16 19 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.20 -5.33 8.49 -38.75 -0.33 -5.66 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.73 7.93 -51.93 -0.41 0.32 16 38 H 0.04 0.72 7.95 -51.93 -0.41 0.30 16 39 H 0.39 7.32 8.48 -40.82 -0.35 6.97 16 40 H 0.08 1.80 6.69 -52.49 -0.35 1.45 16 41 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.37 6.61 8.83 -40.82 -0.36 6.25 16 43 H 0.39 7.95 7.05 -40.82 -0.29 7.66 16 44 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16 45 H 0.12 3.20 6.23 -52.48 -0.33 2.87 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -28.62 360.70 -10.51 -39.13 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -7.90 Total: 20.42 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -3.58 Total: -24.64 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.57 Total: -54.49 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.62 -10.51 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703780708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.082 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds