Wall clock time and date at job start Thu Apr 9 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00093 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00313 * 3 2 1 5 5 H 1.48500 * 109.46815 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47048 * 149.99853 * 3 2 1 7 7 C 1.37882 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99503 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00194 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00291 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47367 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.17858 * 306.70772 * 12 11 10 14 14 C 1.51088 * 110.14236 * 185.00064 * 12 11 10 15 15 C 1.33059 * 106.93704 * 240.63489 * 14 12 11 16 16 C 1.46538 * 109.52147 * 0.22830 * 15 14 12 17 17 O 1.21528 * 125.02764 * 179.97438 * 16 15 14 18 18 O 1.34621 * 109.94695 * 359.97438 * 16 15 14 19 19 H 0.96996 * 119.99880 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47371 * 60.00037 * 9 7 2 21 21 H 1.08996 * 109.47284 * 299.99793 * 9 7 2 22 22 H 1.09005 * 109.46952 * 59.99880 * 11 10 9 23 23 H 1.09004 * 109.46909 * 300.00572 * 11 10 9 24 24 H 1.08002 * 126.53504 * 60.90360 * 14 12 11 25 25 H 1.07998 * 125.23720 * 180.25163 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 1 3.3462 -5.7886 -0.8237 14 6 2.0181 -7.3239 -0.1279 15 6 2.3542 -8.0061 0.9640 16 6 3.1815 -7.1640 1.8322 17 8 3.6424 -7.5071 2.9031 18 8 3.3554 -5.9541 1.2681 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6241 -2.5575 0.8880 22 1 0.9446 -4.9820 -0.8931 23 1 0.9452 -4.9830 0.8869 24 1 1.4141 -7.6814 -0.9487 25 1 2.0624 -9.0238 1.1773 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610374.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:47:25 Heat of formation + Delta-G solvation = -102.727859 kcal Electronic energy + Delta-G solvation = -11997.490415 eV Core-core repulsion = 9556.301554 eV Total energy + Delta-G solvation = -2441.188861 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.072 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.31294 -37.61402 -36.53596 -33.50827 -32.77503 -29.78523 -27.03795 -23.89747 -22.39943 -21.63332 -21.02224 -17.38314 -16.76120 -16.34293 -15.60502 -15.50755 -14.75309 -14.42323 -14.08142 -13.59214 -13.41372 -12.52457 -12.17820 -11.59101 -11.42365 -10.90420 -10.84239 -10.81822 -10.37312 -10.17997 -9.74979 -9.20016 -8.97900 -8.29908 -6.16426 -4.18445 0.78200 2.81781 3.19387 3.28479 3.33750 3.39721 3.84378 3.89671 4.33374 4.64968 4.96851 5.14021 5.20551 5.39704 5.49700 5.66216 5.77011 5.90808 6.74024 6.94815 7.31045 7.49169 7.72925 8.05036 8.41273 8.93406 9.46600 10.95098 Molecular weight = 198.07amu Principal moments of inertia in cm(-1) A = 0.069803 B = 0.006726 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.032359 B = 4161.648155 C = 4367.358093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.195 3.805 10 O -0.388 6.388 11 C 0.064 3.936 12 C 0.085 3.915 13 H 0.135 0.865 14 C -0.102 4.102 15 C -0.234 4.234 16 C 0.488 3.512 17 O -0.466 6.466 18 O -0.303 6.303 19 H 0.265 0.735 20 H 0.008 0.992 21 H 0.008 0.992 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.177 0.823 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 -13.357 -3.162 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.121 3.879 10 O -0.308 6.308 11 C -0.014 4.014 12 C 0.030 3.970 13 H 0.152 0.848 14 C -0.121 4.121 15 C -0.254 4.254 16 C 0.331 3.669 17 O -0.353 6.353 18 O -0.218 6.218 19 H 0.074 0.926 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.194 0.806 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.447 -13.136 -2.567 13.462 hybrid contribution -0.130 0.705 -0.121 0.727 sum 1.317 -12.431 -2.688 12.786 Atomic orbital electron populations 1.69957 1.06128 1.27312 1.50385 1.24950 0.95003 0.99505 0.94973 0.86300 0.79726 0.82040 0.78250 1.20416 1.21033 1.19526 1.21040 0.94195 0.89159 1.51110 0.91366 1.20284 0.88695 0.83286 0.95646 1.87924 1.35342 1.12264 1.95226 1.22339 0.92472 0.85494 1.01125 1.22879 0.95310 0.93719 0.85139 0.84772 1.24944 0.94928 0.94083 0.98109 1.23977 1.02445 1.02550 0.96397 1.21461 0.78709 0.81319 0.85434 1.90869 1.49604 1.74482 1.20332 1.87648 1.66937 1.33499 1.33700 0.92564 0.97390 0.97398 0.91583 0.93119 0.80570 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.78 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.52 -15.08 9.43 -34.44 -0.32 -15.40 15 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 15 9 C 0.19 5.20 5.69 36.00 0.20 5.41 15 10 O -0.39 -9.04 10.33 -35.45 -0.37 -9.40 15 11 C 0.06 1.06 5.65 37.15 0.21 1.27 15 12 C 0.09 1.14 3.96 -27.70 -0.11 1.03 15 13 H 0.13 1.59 8.14 -51.93 -0.42 1.17 15 14 C -0.10 -0.91 10.51 -35.92 -0.38 -1.29 15 15 C -0.23 -2.45 10.86 -38.04 -0.41 -2.87 15 16 C 0.49 7.73 8.56 34.08 0.29 8.02 15 17 O -0.47 -8.86 18.04 -18.94 -0.34 -9.20 15 18 O -0.30 -5.28 10.93 -41.38 -0.45 -5.73 15 19 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 20 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 15 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.18 0.84 8.06 -52.49 -0.42 0.41 15 25 H 0.17 1.26 8.06 -52.49 -0.42 0.83 15 LS Contribution 236.52 15.07 3.56 3.56 Total: -1.00 -33.98 236.52 -5.00 -38.98 By element: Atomic # 1 Polarization: -4.32 SS G_CDS: -2.50 Total: -6.83 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.62 Total: -2.29 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.16 Total: -24.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -33.98 -5.00 -38.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610374.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.746 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds