Wall clock time and date at job start Thu Apr 9 2020 11:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.54980 * 2 1 4 4 C 1.54997 * 110.61472 * 236.95273 * 2 1 3 5 5 C 1.54810 * 102.09240 * 204.47323 * 4 2 1 6 6 C 1.54101 * 104.18639 * 20.88217 * 5 4 2 7 7 H 1.09005 * 109.88258 * 242.60447 * 6 5 4 8 8 C 1.52999 * 109.88023 * 121.45087 * 6 5 4 9 9 N 1.46898 * 109.47301 * 180.71172 * 8 6 5 10 10 C 1.46903 * 111.00170 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47158 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99951 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99858 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00184 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99912 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47089 * 90.00317 * 15 13 11 17 17 H 1.48504 * 109.47199 * 210.00460 * 15 13 11 18 18 H 1.48506 * 109.47327 * 330.00191 * 15 13 11 19 19 O 1.43749 * 107.29638 * 2.02989 * 6 5 4 20 20 H 1.09001 * 109.47002 * 298.56958 * 1 2 3 21 21 H 1.08993 * 109.46955 * 58.57395 * 1 2 3 22 22 H 1.09000 * 109.47050 * 178.57224 * 1 2 3 23 23 H 1.09006 * 110.90676 * 322.67101 * 4 2 1 24 24 H 1.09002 * 110.91071 * 86.27894 * 4 2 1 25 25 H 1.08990 * 110.49098 * 262.20706 * 5 4 2 26 26 H 1.09004 * 110.60011 * 139.60946 * 5 4 2 27 27 H 1.08991 * 109.47371 * 300.71736 * 8 6 5 28 28 H 1.09006 * 109.47115 * 60.72013 * 8 6 5 29 29 H 1.00907 * 110.99572 * 56.04926 * 9 8 6 30 30 H 1.09004 * 109.47127 * 300.00259 * 10 9 8 31 31 H 1.08997 * 109.47039 * 60.00282 * 10 9 8 32 32 H 0.96997 * 119.99697 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7911 -1.2160 5 6 3.4795 -1.2178 -0.7219 6 6 3.3840 -1.1243 0.8133 7 1 4.0855 -0.3765 1.1835 8 6 3.6935 -2.4863 1.4378 9 7 3.5833 -2.3912 2.8995 10 6 3.8751 -3.6834 3.5346 11 6 3.7518 -3.5471 5.0304 12 1 3.4831 -2.5959 5.4657 13 6 3.9809 -4.6371 5.8431 14 7 4.3076 -5.7955 5.3131 15 14 3.8288 -4.4680 7.6972 16 1 2.4337 -4.7676 8.1088 17 1 4.7556 -5.4212 8.3589 18 1 4.1761 -3.0809 8.0981 19 8 2.0385 -0.7337 1.1348 20 1 -0.3633 0.4915 0.9025 21 1 -0.3633 0.5358 -0.8769 22 1 -0.3633 -1.0274 -0.0256 23 1 1.4549 -1.6627 -1.4234 24 1 2.1509 -0.1507 -2.0949 25 1 4.2406 -0.5349 -1.0990 26 1 3.6997 -2.2403 -1.0288 27 1 2.9836 -3.2257 1.0672 28 1 4.7059 -2.7878 1.1687 29 1 2.6732 -2.0513 3.1722 30 1 3.1667 -4.4314 3.1786 31 1 4.8887 -3.9927 3.2800 32 1 4.4691 -6.5621 5.8849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148445599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:48:13 Heat of formation + Delta-G solvation = -61.978721 kcal Electronic energy + Delta-G solvation = -12750.747128 eV Core-core repulsion = 10517.565560 eV Total energy + Delta-G solvation = -2233.181568 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.43769 -35.14733 -32.64704 -32.11283 -31.26415 -27.93693 -25.61383 -23.00434 -21.39311 -20.95724 -20.67085 -16.62806 -16.29221 -15.66152 -15.00113 -14.51643 -13.98530 -13.71327 -13.23761 -12.88116 -12.57870 -12.26299 -11.89257 -11.66220 -11.28031 -11.19627 -11.02403 -10.79917 -10.71757 -10.53743 -10.44654 -9.79996 -9.40276 -9.07603 -8.42494 -7.18653 -5.97519 -3.98859 3.36362 3.41642 3.47211 3.95207 4.48296 4.64280 4.72252 4.97305 5.04557 5.22042 5.38335 5.42199 5.58683 5.61211 5.67171 5.76310 5.83235 5.89857 6.03808 6.12401 6.14446 6.34670 6.47367 7.20728 7.32592 7.50861 7.85790 8.19702 8.51657 8.72136 9.11136 9.65769 11.13848 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061050 B = 0.006510 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.532180 B = 4300.330752 C = 4561.602257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.065 0.935 4 C -0.150 4.150 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.073 0.927 8 C 0.063 3.937 9 N -0.689 5.689 10 C 0.193 3.807 11 C -0.511 4.511 12 H 0.062 0.938 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 O -0.365 6.365 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.337 0.663 30 H -0.015 1.015 31 H 0.026 0.974 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 9.796 -12.833 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.083 0.917 4 C -0.188 4.188 5 C -0.191 4.191 6 C 0.022 3.978 7 H 0.091 0.909 8 C -0.067 4.067 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.550 4.550 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 O -0.285 6.285 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.154 0.846 30 H 0.003 0.997 31 H 0.044 0.956 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.951 9.789 -12.495 16.357 hybrid contribution -0.658 -0.562 0.546 1.023 sum -4.609 9.227 -11.949 15.785 Atomic orbital electron populations 1.21761 0.93545 1.02840 1.02132 1.23073 0.94992 0.95266 0.85513 0.91665 1.23166 0.96607 1.00646 0.98339 1.22985 0.97337 1.02763 0.95971 1.22868 0.84457 0.97612 0.92833 0.90910 1.22057 1.00093 0.93257 0.91339 1.60646 1.35682 1.31780 1.03867 1.19559 0.95891 0.84011 0.93946 1.21214 1.46451 0.96187 0.91163 0.91931 1.24997 0.95396 0.95176 0.99105 1.69969 1.47974 1.00719 1.35318 0.86473 0.77775 0.77945 0.85061 1.20731 1.21271 1.19750 1.88941 1.28096 1.73283 1.38181 0.91797 0.91571 0.91858 0.90610 0.90701 0.90868 0.90376 0.95928 0.90914 0.84621 0.99699 0.95557 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.66 37.16 0.36 -1.18 16 2 C 0.07 0.85 3.98 -25.67 -0.10 0.75 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.15 -1.61 6.59 -24.72 -0.16 -1.78 16 5 C -0.15 -1.83 6.64 -25.20 -0.17 -2.00 16 6 C 0.08 1.27 3.69 -26.16 -0.10 1.17 16 7 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 8 C 0.06 1.20 5.20 -3.83 -0.02 1.18 16 9 N -0.69 -16.14 6.49 -115.06 -0.75 -16.88 16 10 C 0.19 5.35 5.44 -4.97 -0.03 5.32 16 11 C -0.51 -15.20 9.32 -34.44 -0.32 -15.52 16 12 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 15 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 O -0.37 -6.09 10.30 -35.23 -0.36 -6.45 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 23 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.92 7.70 -51.93 -0.40 0.52 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.34 7.90 8.18 -39.29 -0.32 7.58 16 30 H -0.01 -0.43 8.14 -51.93 -0.42 -0.86 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 266.52 15.07 4.02 4.02 Total: -1.00 -31.65 266.52 -7.35 -39.00 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.33 Total: 0.50 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.64 Total: -10.54 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.01 Total: -43.85 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.36 Total: -6.45 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.65 -7.35 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148445599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.978 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds