Wall clock time and date at job start Thu Apr 9 2020 11:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.34665 * 126.59454 * 95.02088 * 14 13 12 16 16 N 1.34125 * 108.01993 * 179.97438 * 15 14 13 17 17 C 1.30495 * 109.25950 * 0.02562 * 16 15 14 18 18 N 1.35042 * 108.69937 * 359.76786 * 17 16 15 19 19 C 1.46500 * 126.39977 * 180.26964 * 18 17 16 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 24 24 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 25 25 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 26 26 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 27 27 H 1.07997 * 125.99077 * 359.96930 * 15 14 13 28 28 H 1.08003 * 125.65158 * 179.97438 * 17 16 15 29 29 H 1.09007 * 109.46985 * 270.11730 * 19 18 17 30 30 H 1.09001 * 109.47122 * 30.11713 * 19 18 17 31 31 H 1.09000 * 109.47163 * 150.12038 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 3.8613 -0.5796 3.9890 16 7 3.8901 -1.3411 5.0928 17 6 2.6827 -1.7579 5.3598 18 7 1.8387 -1.2655 4.4278 19 6 0.3921 -1.4872 4.3611 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7093 1.1619 -3.4844 24 1 1.4496 -1.4980 1.4100 25 1 2.7589 1.0462 2.1181 26 1 1.0871 0.6162 2.5525 27 1 4.7107 -0.0973 3.5284 28 1 2.4041 -2.3892 6.1907 29 1 0.1880 -2.3773 3.7658 30 1 -0.0011 -1.6257 5.3683 31 1 -0.0870 -0.6238 3.8996 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308144721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:55 Heat of formation + Delta-G solvation = 60.781008 kcal Electronic energy + Delta-G solvation = -13581.464162 eV Core-core repulsion = 11284.983945 eV Total energy + Delta-G solvation = -2296.480217 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.80109 -36.14604 -33.82062 -32.74106 -30.39976 -27.70520 -26.85675 -25.23237 -24.03637 -21.18551 -20.24119 -19.70375 -16.99551 -16.16456 -15.62322 -14.77876 -14.58153 -14.19706 -13.65431 -13.18635 -12.86773 -12.76604 -12.68007 -12.16619 -11.74291 -11.55348 -10.97551 -10.82534 -10.57957 -10.21215 -10.00487 -9.70580 -9.36421 -9.05634 -8.40019 -8.09430 -7.30965 -6.01963 -4.05200 2.28124 2.97317 3.30459 3.38374 3.43326 3.45362 4.42790 4.73929 4.87506 4.99166 5.10190 5.29980 5.35340 5.47716 5.48473 5.80466 6.10311 6.13638 6.57982 6.63569 6.74579 6.99560 7.02713 7.26347 7.40598 7.66097 7.84523 8.20086 8.31573 8.43647 8.54172 9.02646 9.60558 11.05162 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051249 B = 0.007007 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.218893 B = 3995.006817 C = 4234.461786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.036 0.964 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.676 5.676 13 C 0.133 3.867 14 C -0.004 4.004 15 C -0.020 4.020 16 N -0.498 5.498 17 C 0.166 3.834 18 N -0.461 5.461 19 C 0.072 3.928 20 H 0.003 0.997 21 H 0.027 0.973 22 H 0.091 0.909 23 H 0.259 0.741 24 H 0.322 0.678 25 H 0.089 0.911 26 H 0.024 0.976 27 H 0.168 0.832 28 H 0.199 0.801 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -2.682 12.005 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.305 5.305 13 C 0.002 3.998 14 C -0.118 4.118 15 C -0.168 4.168 16 N -0.216 5.216 17 C -0.116 4.116 18 N -0.145 5.145 19 C -0.071 4.071 20 H 0.022 0.978 21 H 0.046 0.954 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.139 0.861 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.186 0.814 28 H 0.216 0.784 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.491 -2.681 12.138 12.519 hybrid contribution -1.567 -0.197 -1.105 1.928 sum -3.058 -2.878 11.033 11.805 Atomic orbital electron populations 1.22445 1.00724 0.99136 1.00530 1.19226 0.89556 0.94600 0.86344 0.94582 1.21189 1.30160 1.12498 0.89480 0.91815 1.24947 0.95300 0.95200 0.99083 1.69881 1.37411 1.23216 1.23324 0.86441 0.78515 0.79712 0.82755 1.19701 1.21222 1.21055 1.60880 1.58154 1.08681 1.02817 1.20334 0.98473 0.94584 0.86374 1.21504 0.92505 1.01845 0.95972 1.22022 0.95604 1.03484 0.95664 1.70222 1.20999 1.14119 1.16265 1.24772 0.85469 1.04118 0.97229 1.45288 1.08518 1.38433 1.22254 1.22010 0.77772 1.03632 1.03726 0.97779 0.95385 0.89070 0.93079 0.86135 0.89236 0.95819 0.81444 0.78393 0.90426 0.89725 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.94 37.16 0.33 -3.57 16 2 C 0.21 5.15 2.57 -68.87 -0.18 4.97 16 3 H 0.04 0.97 7.80 -51.93 -0.40 0.56 16 4 C -0.49 -13.59 8.84 -34.44 -0.30 -13.89 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.68 -14.14 6.22 -109.22 -0.68 -14.82 16 13 C 0.13 2.35 5.72 -4.98 -0.03 2.32 16 14 C 0.00 -0.06 6.46 -81.60 -0.53 -0.59 16 15 C -0.02 -0.34 11.79 -17.81 -0.21 -0.55 16 16 N -0.50 -8.40 11.25 -14.67 -0.17 -8.57 16 17 C 0.17 2.27 12.56 -90.38 -1.14 1.13 16 18 N -0.46 -6.34 3.15 -121.36 -0.38 -6.72 16 19 C 0.07 0.70 11.01 59.85 0.66 1.36 16 20 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 21 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 24 H 0.32 6.48 8.46 -39.29 -0.33 6.15 16 25 H 0.09 1.60 8.06 -51.93 -0.42 1.18 16 26 H 0.02 0.40 6.66 -51.93 -0.35 0.06 16 27 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 28 H 0.20 1.84 8.06 -52.48 -0.42 1.42 16 29 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.86 7.29 -51.93 -0.38 0.48 16 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -30.79 264.46 -7.36 -38.16 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.24 Total: 3.71 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.49 Total: -7.39 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.60 Total: -54.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.79 -7.36 -38.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.936 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds