Wall clock time and date at job start Thu Apr 9 2020 11:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.62530 * 2 1 4 4 C 1.54983 * 110.57020 * 237.16562 * 2 1 3 5 5 C 1.55130 * 102.22613 * 204.16562 * 4 2 1 6 6 C 1.51845 * 104.31438 * 37.93262 * 5 4 2 7 7 C 1.33125 * 126.33724 * 156.13057 * 6 5 4 8 8 C 1.46949 * 119.99768 * 179.68919 * 7 6 5 9 9 O 1.21653 * 120.00172 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99602 * 179.97438 * 8 7 6 11 11 C 1.36826 * 119.99667 * 179.72290 * 10 8 7 12 12 H 1.08002 * 119.99777 * 0.27735 * 11 10 8 13 13 C 1.39067 * 119.99778 * 180.27642 * 11 10 8 14 14 N 1.31354 * 120.00544 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99980 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47002 * 0.02562 * 15 13 11 17 17 H 1.48492 * 109.47205 * 120.00157 * 15 13 11 18 18 H 1.48503 * 109.47239 * 240.00229 * 15 13 11 19 19 C 1.51441 * 107.31894 * 335.87201 * 6 5 4 20 20 H 1.09002 * 109.46779 * 298.61909 * 1 2 3 21 21 H 1.08994 * 109.47213 * 58.61328 * 1 2 3 22 22 H 1.08999 * 109.46920 * 178.62144 * 1 2 3 23 23 H 1.08998 * 110.83314 * 322.56388 * 4 2 1 24 24 H 1.08999 * 110.82883 * 85.93435 * 4 2 1 25 25 H 1.08997 * 110.57584 * 279.19143 * 5 4 2 26 26 H 1.08999 * 110.40988 * 156.59153 * 5 4 2 27 27 H 1.08001 * 119.99801 * 359.68891 * 7 6 5 28 28 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 29 29 H 0.96999 * 120.00335 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.98626 * 119.94560 * 19 6 5 31 31 H 1.09004 * 109.98191 * 241.24862 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0746 -0.7868 -1.2192 5 6 3.4851 -1.2115 -0.7327 6 6 3.2912 -1.5443 0.7361 7 6 4.0548 -2.3512 1.4695 8 6 3.7415 -2.5700 2.8884 9 8 2.7842 -2.0141 3.3928 10 7 4.5143 -3.3874 3.6308 11 6 4.2260 -3.5867 4.9534 12 1 3.3765 -3.0925 5.4013 13 6 5.0268 -4.4256 5.7209 14 7 6.0602 -5.0263 5.1763 15 14 4.6328 -4.6982 7.5264 16 1 3.4266 -3.9138 7.8938 17 1 4.3756 -6.1412 7.7645 18 1 5.7826 -4.2569 8.3562 19 6 2.0722 -0.7832 1.2136 20 1 -0.3633 0.4923 0.9021 21 1 -0.3633 0.5352 -0.8772 22 1 -0.3633 -1.0274 -0.0247 23 1 1.4535 -1.6580 -1.4272 24 1 2.1431 -0.1434 -2.0964 25 1 4.1930 -0.3906 -0.8469 26 1 3.8275 -2.0897 -1.2801 27 1 4.9045 -2.8451 1.0216 28 1 5.2775 -3.8310 3.2287 29 1 6.6185 -5.6117 5.7116 30 1 1.3160 -1.4800 1.5753 31 1 2.3525 -0.0917 2.0083 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308287321.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:10 Heat of formation + Delta-G solvation = -48.054735 kcal Electronic energy + Delta-G solvation = -13375.385128 eV Core-core repulsion = 11041.892688 eV Total energy + Delta-G solvation = -2333.492440 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.70868 -37.39675 -33.96395 -32.13690 -31.17530 -29.44521 -26.77126 -25.07478 -23.45023 -19.99462 -19.83020 -18.23062 -17.18010 -15.99146 -15.28953 -14.64915 -14.29226 -13.62921 -13.43995 -13.33474 -12.86108 -12.53274 -12.10692 -11.91411 -11.57782 -11.24910 -11.11088 -10.75418 -10.64002 -10.34844 -10.33625 -10.28680 -10.21981 -9.52474 -8.40504 -8.23959 -7.93645 -6.44107 -3.78500 2.21315 3.20238 3.26579 3.34236 4.17788 4.43351 4.66286 4.92546 5.06632 5.15344 5.39450 5.52719 5.58232 5.68963 5.71909 5.75700 6.00170 6.04517 6.05910 6.16113 6.26227 6.32356 6.40695 6.67001 6.74615 7.08165 7.24224 7.53668 8.10074 8.64891 9.18777 9.58339 10.13425 10.73621 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.063627 B = 0.006439 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.955844 B = 4347.713073 C = 4719.678154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.094 4.094 6 C -0.081 4.081 7 C -0.181 4.181 8 C 0.465 3.535 9 O -0.599 6.599 10 N -0.553 5.553 11 C -0.295 4.295 12 H 0.105 0.895 13 C 0.021 3.979 14 N -0.897 5.897 15 Si 0.931 3.069 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.074 4.074 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.393 0.607 29 H 0.272 0.728 30 H 0.082 0.918 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 5.887 -10.570 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.131 4.131 6 C -0.084 4.084 7 C -0.203 4.203 8 C 0.254 3.746 9 O -0.486 6.486 10 N -0.187 5.187 11 C -0.425 4.425 12 H 0.123 0.877 13 C -0.181 4.181 14 N -0.537 5.537 15 Si 0.758 3.242 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.111 4.111 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.226 0.774 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.762 6.101 -10.111 12.733 hybrid contribution 0.541 -0.576 0.662 1.031 sum -4.222 5.525 -9.449 11.731 Atomic orbital electron populations 1.21771 0.95200 1.01741 1.01158 1.22097 0.95434 0.99117 0.95651 0.91115 1.22602 0.95903 0.99741 0.97245 1.21499 0.97433 1.01050 0.93120 1.22520 0.95856 0.95566 0.94419 1.22156 1.00890 1.02054 0.95153 1.17963 0.85896 0.84401 0.86296 1.90586 1.31046 1.53318 1.73683 1.41842 1.26756 1.39993 1.10123 1.19811 1.12389 1.25258 0.85017 0.87710 1.25328 0.95583 0.96499 1.00720 1.69601 1.16445 1.30255 1.37437 0.85777 0.78581 0.78119 0.81755 1.19149 1.20692 1.20686 1.21163 0.95558 0.98268 0.96115 0.92648 0.93198 0.92631 0.91346 0.91796 0.90494 0.91257 0.86841 0.77361 0.91790 0.89988 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.12 37.16 0.34 -1.32 16 2 C -0.10 -1.37 3.49 -88.90 -0.31 -1.68 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -1.39 6.39 -24.56 -0.16 -1.54 16 5 C -0.09 -1.24 6.66 -26.19 -0.17 -1.41 16 6 C -0.08 -1.41 6.15 -100.20 -0.62 -2.03 16 7 C -0.18 -3.62 9.94 -37.84 -0.38 -3.99 16 8 C 0.47 11.70 7.71 -12.73 -0.10 11.60 16 9 O -0.60 -16.64 13.68 5.23 0.07 -16.57 16 10 N -0.55 -14.68 5.27 -12.10 -0.06 -14.74 16 11 C -0.29 -8.41 9.68 -15.02 -0.15 -8.56 16 12 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 13 C 0.02 0.57 5.50 -17.45 -0.10 0.47 16 14 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 15 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.07 -1.29 4.40 -26.85 -0.12 -1.41 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.39 9.99 7.88 -40.82 -0.32 9.67 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.60 7.35 -51.93 -0.38 1.21 16 31 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 LS Contribution 263.36 15.07 3.97 3.97 Total: -1.00 -30.51 263.36 -6.49 -37.00 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.41 Total: 8.06 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.75 Total: -9.88 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.66 Total: -38.76 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.07 Total: -16.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.51 -6.49 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308287321.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.057 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds