Wall clock time and date at job start Thu Apr 9 2020 11:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48496 * 109.46926 * 269.99401 * 3 2 1 5 5 H 1.48498 * 109.46826 * 29.99502 * 3 2 1 6 6 H 1.48503 * 109.47015 * 149.99591 * 3 2 1 7 7 C 1.38947 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00194 * 199.32859 * 7 2 1 9 9 N 1.37101 * 120.00119 * 19.33390 * 7 2 1 10 10 C 1.34776 * 119.99516 * 42.62935 * 9 7 2 11 11 O 1.21287 * 120.00656 * 359.72086 * 10 9 7 12 12 C 1.50702 * 119.99536 * 180.02562 * 10 9 7 13 13 C 1.53788 * 113.61133 * 277.49031 * 12 10 9 14 14 C 1.53784 * 87.08112 * 220.02031 * 13 12 10 15 15 C 1.53784 * 87.08117 * 25.43337 * 14 13 12 16 16 C 1.46497 * 120.00278 * 222.62568 * 9 7 2 17 17 C 1.53004 * 117.49672 * 3.38461 * 16 9 7 18 18 C 1.53000 * 117.49971 * 294.72526 * 16 9 7 19 19 H 0.96997 * 120.00334 * 354.82398 * 1 2 3 20 20 H 1.08998 * 112.85552 * 48.79943 * 12 10 9 21 21 H 1.09002 * 113.61495 * 334.56965 * 13 12 10 22 22 H 1.08995 * 113.61260 * 105.47412 * 13 12 10 23 23 H 1.08999 * 113.61620 * 270.88231 * 14 13 12 24 24 H 1.08998 * 113.61251 * 139.97854 * 14 13 12 25 25 H 1.08995 * 113.61562 * 220.01482 * 15 14 13 26 26 H 1.08999 * 113.68684 * 89.12546 * 15 14 13 27 27 H 1.08995 * 115.54990 * 149.04629 * 16 9 7 28 28 H 1.09004 * 117.49827 * 359.97438 * 17 16 9 29 29 H 1.08992 * 117.50200 * 145.02205 * 17 16 9 30 30 H 1.09001 * 117.49968 * 214.97660 * 18 16 9 31 31 H 1.09005 * 117.49880 * 359.97308 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0433 -1.2296 0.3101 9 7 1.3814 -2.3574 -0.3920 10 6 0.5769 -2.3526 -1.4733 11 8 0.4039 -1.3263 -2.0961 12 6 -0.1133 -3.6210 -1.9045 13 6 0.7736 -4.5466 -2.7540 14 6 -0.4715 -4.8199 -3.6143 15 6 -0.9942 -3.4490 -3.1533 16 6 1.5854 -3.5956 0.3637 17 6 2.4462 -3.5190 1.6263 18 6 2.9921 -4.1974 0.3674 19 1 -0.4850 0.8366 0.0758 20 1 -0.6162 -4.1298 -1.0822 21 1 1.5666 -4.0226 -3.2876 22 1 1.1324 -5.4231 -2.2146 23 1 -1.0718 -5.6578 -3.2600 24 1 -0.2615 -4.8703 -4.6827 25 1 -2.0623 -3.4394 -2.9363 26 1 -0.6853 -2.6241 -3.7953 27 1 0.7424 -4.2865 0.3706 28 1 2.8610 -2.5472 1.8944 29 1 2.1698 -4.1597 2.4636 30 1 3.0745 -5.2843 0.3770 31 1 3.7657 -3.6722 -0.1929 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308411440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:10 Heat of formation + Delta-G solvation = 22.001036 kcal Electronic energy + Delta-G solvation = -14316.377018 eV Core-core repulsion = 11985.922424 eV Total energy + Delta-G solvation = -2330.454594 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.17803 -37.11524 -35.56513 -32.65782 -30.79861 -26.60393 -25.05221 -24.16150 -21.66486 -21.15113 -19.96752 -18.34077 -16.76546 -15.99431 -14.94923 -14.58219 -14.45689 -13.71799 -13.36640 -13.01053 -12.30347 -11.91682 -11.79119 -11.27605 -11.11535 -10.87145 -10.82013 -10.65851 -10.32165 -10.13055 -10.00305 -9.87274 -9.73622 -9.63247 -8.63688 -7.84322 -6.94209 -6.04685 -3.78462 3.33823 3.40689 3.43967 4.18958 4.33674 4.79867 4.90309 5.15479 5.25277 5.27046 5.41957 5.54608 5.64600 5.83623 5.84680 6.02970 6.12301 6.24498 6.26387 6.31173 6.33014 6.51363 6.54092 6.74477 6.81994 6.97486 7.01680 7.67568 8.34115 9.14663 9.26624 9.75967 10.41800 11.04570 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.013583 C = 0.010199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.494640 B = 2060.868662 C = 2744.727626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.350 4.350 8 H 0.076 0.924 9 N -0.429 5.429 10 C 0.491 3.509 11 O -0.533 6.533 12 C -0.128 4.128 13 C -0.119 4.119 14 C -0.145 4.145 15 C -0.116 4.116 16 C 0.082 3.918 17 C -0.177 4.177 18 C -0.207 4.207 19 H 0.263 0.737 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -9.148 -1.136 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.477 4.477 8 H 0.094 0.906 9 N -0.149 5.149 10 C 0.278 3.722 11 O -0.411 6.411 12 C -0.149 4.149 13 C -0.157 4.157 14 C -0.182 4.182 15 C -0.154 4.154 16 C -0.025 4.025 17 C -0.215 4.215 18 C -0.246 4.246 19 H 0.073 0.927 20 H 0.109 0.891 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.829 -8.458 -1.529 8.635 hybrid contribution 0.341 0.722 0.286 0.848 sum 1.170 -7.736 -1.243 7.922 Atomic orbital electron populations 1.69839 1.06568 1.27267 1.42890 1.25204 0.94769 0.99286 0.94477 0.86236 0.79286 0.82358 0.78266 1.20390 1.21354 1.19956 1.18861 0.95004 0.84239 1.49618 0.90616 1.42796 1.44097 1.05921 1.22100 1.19635 0.82811 0.88634 0.81095 1.90501 1.62585 1.33390 1.54613 1.22619 0.98124 0.96859 0.97336 1.22732 0.96574 0.98632 0.97732 1.22859 0.98099 0.97913 0.99372 1.22715 0.98629 0.96918 0.97112 1.21629 0.92306 0.91261 0.97293 1.23085 1.04837 1.02537 0.91047 1.23302 0.99972 0.98546 1.02807 0.92699 0.89112 0.90187 0.91749 0.90726 0.91922 0.92166 0.89135 0.88159 0.87581 0.89907 0.89928 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.32 11.66 55.50 0.65 -24.68 16 2 C 0.07 2.11 4.35 -17.47 -0.08 2.03 16 3 Si 0.91 22.43 29.60 -169.99 -5.03 17.39 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.35 -9.79 7.99 -14.93 -0.12 -9.91 16 8 H 0.08 2.05 7.19 -52.48 -0.38 1.67 16 9 N -0.43 -10.99 2.85 -107.73 -0.31 -11.29 16 10 C 0.49 12.77 6.50 -10.98 -0.07 12.70 16 11 O -0.53 -16.15 13.52 5.55 0.08 -16.07 16 12 C -0.13 -2.55 3.00 -90.95 -0.27 -2.82 16 13 C -0.12 -1.96 7.61 -25.91 -0.20 -2.16 16 14 C -0.14 -2.11 8.08 -25.92 -0.21 -2.32 16 15 C -0.12 -2.11 7.41 -25.91 -0.19 -2.31 16 16 C 0.08 1.67 5.88 -67.93 -0.40 1.27 16 17 C -0.18 -3.28 9.80 -26.69 -0.26 -3.54 16 18 C -0.21 -3.62 10.36 -26.69 -0.28 -3.89 16 19 H 0.26 7.66 8.32 -40.82 -0.34 7.32 16 20 H 0.09 1.70 7.11 -51.93 -0.37 1.33 16 21 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.84 7.43 -51.93 -0.39 1.46 16 27 H 0.10 1.86 6.71 -51.93 -0.35 1.52 16 28 H 0.11 2.17 6.69 -51.93 -0.35 1.83 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 258.46 15.07 3.89 3.89 Total: -1.00 -32.67 258.46 -7.14 -39.81 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.34 Total: 1.89 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.08 Total: -10.95 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.34 Total: -35.97 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.07 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.67 -7.14 -39.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308411440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.814 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds