Wall clock time and date at job start Thu Apr 9 2020 11:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48496 * 109.46926 * 269.99401 * 3 2 1 5 5 H 1.48498 * 109.46826 * 29.99502 * 3 2 1 6 6 H 1.48503 * 109.47015 * 149.99591 * 3 2 1 7 7 C 1.38947 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00194 * 199.32859 * 7 2 1 9 9 N 1.37101 * 120.00119 * 19.33390 * 7 2 1 10 10 C 1.34776 * 119.99516 * 42.62935 * 9 7 2 11 11 O 1.21287 * 120.00656 * 359.72086 * 10 9 7 12 12 C 1.50702 * 119.99536 * 180.02562 * 10 9 7 13 13 C 1.53788 * 113.61133 * 277.49031 * 12 10 9 14 14 C 1.53784 * 87.08112 * 220.02031 * 13 12 10 15 15 C 1.53784 * 87.08117 * 25.43337 * 14 13 12 16 16 C 1.46497 * 120.00278 * 222.62568 * 9 7 2 17 17 C 1.53004 * 117.49672 * 3.38461 * 16 9 7 18 18 C 1.53000 * 117.49971 * 294.72526 * 16 9 7 19 19 H 0.96997 * 120.00334 * 354.82398 * 1 2 3 20 20 H 1.08998 * 112.85552 * 48.79943 * 12 10 9 21 21 H 1.09002 * 113.61495 * 334.56965 * 13 12 10 22 22 H 1.08995 * 113.61260 * 105.47412 * 13 12 10 23 23 H 1.08999 * 113.61620 * 270.88231 * 14 13 12 24 24 H 1.08998 * 113.61251 * 139.97854 * 14 13 12 25 25 H 1.08995 * 113.61562 * 220.01482 * 15 14 13 26 26 H 1.08999 * 113.68684 * 89.12546 * 15 14 13 27 27 H 1.08995 * 115.54990 * 149.04629 * 16 9 7 28 28 H 1.09004 * 117.49827 * 359.97438 * 17 16 9 29 29 H 1.08992 * 117.50200 * 145.02205 * 17 16 9 30 30 H 1.09001 * 117.49968 * 214.97660 * 18 16 9 31 31 H 1.09005 * 117.49880 * 359.97308 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0433 -1.2296 0.3101 9 7 1.3814 -2.3574 -0.3920 10 6 0.5769 -2.3526 -1.4733 11 8 0.4039 -1.3263 -2.0961 12 6 -0.1133 -3.6210 -1.9045 13 6 0.7736 -4.5466 -2.7540 14 6 -0.4715 -4.8199 -3.6143 15 6 -0.9942 -3.4490 -3.1533 16 6 1.5854 -3.5956 0.3637 17 6 2.4462 -3.5190 1.6263 18 6 2.9921 -4.1974 0.3674 19 1 -0.4850 0.8366 0.0758 20 1 -0.6162 -4.1298 -1.0822 21 1 1.5666 -4.0226 -3.2876 22 1 1.1324 -5.4231 -2.2146 23 1 -1.0718 -5.6578 -3.2600 24 1 -0.2615 -4.8703 -4.6827 25 1 -2.0623 -3.4394 -2.9363 26 1 -0.6853 -2.6241 -3.7953 27 1 0.7424 -4.2865 0.3706 28 1 2.8610 -2.5472 1.8944 29 1 2.1698 -4.1597 2.4636 30 1 3.0745 -5.2843 0.3770 31 1 3.7657 -3.6722 -0.1929 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308411440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:09 Heat of formation + Delta-G solvation = 1.376695 kcal Electronic energy + Delta-G solvation = -14317.271357 eV Core-core repulsion = 11985.922424 eV Total energy + Delta-G solvation = -2331.348933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87836 -38.66076 -37.35114 -34.69246 -32.78259 -28.37723 -26.43730 -25.97322 -23.13946 -22.79798 -21.65410 -19.94248 -18.55385 -17.84106 -16.76062 -16.31880 -16.01777 -15.57544 -15.00355 -14.70078 -14.01446 -13.60650 -13.31117 -12.93850 -12.91104 -12.71330 -12.63560 -12.21361 -12.07662 -11.83542 -11.64576 -11.34322 -11.12666 -11.11180 -10.70135 -9.81873 -8.94667 -8.20030 -5.96510 1.32934 1.41797 1.46479 2.25802 2.44472 3.11031 3.16898 3.37394 3.80185 3.87596 3.97308 4.07836 4.14353 4.31094 4.41226 4.55115 4.81459 4.87918 4.91050 4.94993 5.06934 5.11399 5.14583 5.31823 5.36888 5.46231 5.50555 5.64171 6.20581 7.05293 7.25762 7.75164 8.43258 8.89090 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.013583 C = 0.010199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.494640 B = 2060.868662 C = 2744.727626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.019 3.981 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.358 4.358 8 H 0.076 0.924 9 N -0.445 5.445 10 C 0.472 3.528 11 O -0.593 6.593 12 C -0.132 4.132 13 C -0.110 4.110 14 C -0.117 4.117 15 C -0.127 4.127 16 C 0.050 3.950 17 C -0.176 4.176 18 C -0.177 4.177 19 H 0.258 0.742 20 H 0.108 0.892 21 H 0.059 0.941 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -11.847 -0.737 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.187 4.187 3 Si 0.794 3.206 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.094 0.906 9 N -0.165 5.165 10 C 0.262 3.738 11 O -0.475 6.475 12 C -0.153 4.153 13 C -0.148 4.148 14 C -0.154 4.154 15 C -0.165 4.165 16 C -0.055 4.055 17 C -0.213 4.213 18 C -0.215 4.215 19 H 0.067 0.933 20 H 0.126 0.874 21 H 0.077 0.923 22 H 0.113 0.887 23 H 0.126 0.874 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.141 0.859 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.503 -11.199 -1.091 11.352 hybrid contribution 0.191 1.507 0.180 1.530 sum 1.694 -9.692 -0.911 9.881 Atomic orbital electron populations 1.69953 1.08093 1.27483 1.45260 1.26050 0.95497 1.02649 0.94509 0.85333 0.79123 0.78664 0.77476 1.21923 1.20559 1.17639 1.19129 0.95243 0.85708 1.48514 0.90589 1.43055 1.43707 1.07040 1.22652 1.20754 0.82535 0.90025 0.80524 1.90449 1.64623 1.36032 1.56432 1.22719 0.99294 0.94797 0.98509 1.22690 0.96517 0.98307 0.97249 1.22789 0.96336 0.96093 1.00195 1.22737 0.98860 0.98622 0.96269 1.21949 0.94860 0.90036 0.98699 1.23142 1.03920 1.02201 0.92040 1.23309 0.96743 1.00670 1.00794 0.93287 0.87394 0.92258 0.88678 0.87440 0.90273 0.91469 0.92442 0.85859 0.90352 0.86432 0.85543 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.13 11.66 21.66 0.25 -54.88 16 2 C 0.02 1.11 4.35 84.93 0.37 1.48 16 3 Si 0.97 47.30 29.60 68.60 2.03 49.33 16 4 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.36 -20.44 7.99 84.04 0.67 -19.77 16 8 H 0.08 4.19 7.19 -2.91 -0.02 4.17 16 9 N -0.44 -22.97 2.85 -613.13 -1.75 -24.72 16 10 C 0.47 25.07 6.50 87.66 0.57 25.64 16 11 O -0.59 -37.63 13.52 -3.05 -0.04 -37.67 16 12 C -0.13 -5.12 3.00 -11.01 -0.03 -5.15 16 13 C -0.11 -3.32 7.61 31.12 0.24 -3.09 16 14 C -0.12 -2.98 8.08 31.12 0.25 -2.73 16 15 C -0.13 -4.54 7.41 31.12 0.23 -4.31 16 16 C 0.05 1.93 5.88 44.99 0.26 2.20 16 17 C -0.18 -6.08 9.80 30.62 0.30 -5.78 16 18 C -0.18 -5.58 10.36 30.62 0.32 -5.26 16 19 H 0.26 15.70 8.32 -92.71 -0.77 14.93 16 20 H 0.11 3.78 7.11 -2.39 -0.02 3.77 16 21 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.06 2.43 7.43 -2.39 -0.02 2.41 16 27 H 0.12 4.19 6.71 -2.39 -0.02 4.17 16 28 H 0.08 3.16 6.69 -2.38 -0.02 3.15 16 29 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -74.99 258.46 4.78 -70.21 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.11 Total: 14.49 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 3.18 Total: -16.77 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.49 Total: -79.60 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.04 Total: -37.67 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -74.99 4.78 -70.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308411440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.584 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds