Wall clock time and date at job start Thu Apr 9 2020 11:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 119.99945 * 2 1 4 4 H 1.48501 * 109.46777 * 269.99812 * 3 2 1 5 5 H 1.48499 * 109.46923 * 29.99512 * 3 2 1 6 6 H 1.48499 * 109.46910 * 149.99572 * 3 2 1 7 7 C 1.38947 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99915 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99848 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99778 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00127 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99768 * 180.02562 * 10 9 7 13 13 C 1.53950 * 113.57669 * 180.02562 * 12 10 9 14 14 C 1.52906 * 86.78208 * 220.58456 * 13 12 10 15 15 C 1.52913 * 121.13846 * 150.61759 * 14 13 12 16 16 C 1.53952 * 86.78179 * 100.82243 * 15 14 13 17 17 C 1.53068 * 121.06931 * 259.16126 * 14 13 12 18 18 C 1.52907 * 88.04368 * 24.89826 * 14 13 12 19 19 H 0.97002 * 120.00127 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00327 * 0.02562 * 9 7 2 21 21 H 1.09000 * 112.82433 * 311.08720 * 12 10 9 22 22 H 1.09003 * 113.66331 * 106.11617 * 13 12 10 23 23 H 1.09003 * 113.66300 * 335.05509 * 13 12 10 24 24 H 1.09000 * 113.66161 * 346.35132 * 15 14 13 25 25 H 1.09004 * 113.74945 * 215.30259 * 15 14 13 26 26 H 1.09002 * 113.58142 * 139.33940 * 16 15 14 27 27 H 1.09004 * 113.57653 * 270.05541 * 16 15 14 28 28 H 1.09006 * 113.66752 * 144.67391 * 17 14 13 29 29 H 1.09001 * 113.71350 * 13.57398 * 17 14 13 30 30 H 1.09008 * 113.66358 * 89.56934 * 18 14 13 31 31 H 1.08997 * 113.66794 * 220.62745 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3705 0.0022 13 6 6.1766 -3.7814 0.0015 14 6 7.2041 -3.2399 0.9959 15 6 7.8522 -4.1515 2.0385 16 6 9.0782 -4.1986 1.1086 17 6 8.6116 -2.8455 0.5415 18 6 6.1773 -2.1814 1.4002 19 1 -0.4850 0.8401 -0.0004 20 1 3.8649 -0.3632 0.0014 21 1 5.9842 -1.7098 -0.7544 22 1 6.6063 -4.0707 -0.9576 23 1 5.5216 -4.5449 0.4213 24 1 7.3511 -5.1130 2.1509 25 1 8.0451 -3.6601 2.9922 26 1 10.0295 -4.1449 1.6380 27 1 9.0437 -5.0109 0.3825 28 1 9.0179 -1.9849 1.0730 29 1 8.7165 -2.7651 -0.5404 30 1 5.5224 -2.4951 2.2132 31 1 6.6075 -1.1925 1.5585 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335527419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:33 Heat of formation + Delta-G solvation = -2.237956 kcal Electronic energy + Delta-G solvation = -13658.947640 eV Core-core repulsion = 11327.441965 eV Total energy + Delta-G solvation = -2331.505676 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41200 -37.93328 -34.43821 -33.76072 -31.58655 -26.21246 -25.69239 -25.54010 -23.76504 -21.32924 -19.13836 -18.06675 -17.74945 -16.09478 -15.36292 -15.18177 -14.90259 -14.07302 -13.56218 -13.11983 -12.66582 -12.53801 -12.22793 -12.10836 -11.82705 -11.65891 -11.20460 -10.84740 -10.64995 -10.55590 -10.09555 -9.95247 -9.91117 -9.74186 -9.53497 -8.38642 -8.14825 -6.28936 -3.79747 3.05352 3.09192 3.16757 3.75834 4.12636 4.47089 4.53580 4.71794 4.79719 4.90546 5.05316 5.13404 5.35091 5.49945 5.64966 5.72270 5.73514 5.88376 5.93665 6.02700 6.08376 6.15590 6.16529 6.26174 6.42065 6.62270 6.77965 7.60845 8.18851 8.63266 8.97965 9.46995 9.88572 10.84368 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056966 B = 0.007516 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.403351 B = 3724.687971 C = 4026.587763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.119 0.881 9 N -0.588 5.588 10 C 0.460 3.540 11 O -0.579 6.579 12 C -0.128 4.128 13 C -0.086 4.086 14 C -0.108 4.108 15 C -0.128 4.128 16 C -0.139 4.139 17 C -0.117 4.117 18 C -0.111 4.111 19 H 0.273 0.727 20 H 0.371 0.629 21 H 0.097 0.903 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.161 -1.747 2.017 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.136 0.864 9 N -0.226 5.226 10 C 0.247 3.753 11 O -0.462 6.462 12 C -0.149 4.149 13 C -0.124 4.124 14 C -0.108 4.108 15 C -0.165 4.165 16 C -0.176 4.176 17 C -0.155 4.155 18 C -0.149 4.149 19 H 0.083 0.917 20 H 0.204 0.796 21 H 0.115 0.885 22 H 0.083 0.917 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.525 -2.324 2.012 16.808 hybrid contribution 0.476 1.526 -0.026 1.599 sum 17.001 -0.797 1.986 17.135 Atomic orbital electron populations 1.69629 1.05647 1.27455 1.49535 1.25043 0.95489 0.97971 0.97659 0.86680 0.79866 0.84041 0.78921 1.19621 1.20178 1.19392 1.19471 0.79488 0.96594 1.47920 0.86355 1.42254 1.07420 1.06354 1.66579 1.19689 0.88165 0.84257 0.83223 1.90532 1.69700 1.31237 1.54777 1.22565 0.94063 0.99503 0.98813 1.22485 0.95481 0.96299 0.98102 1.22508 0.93195 0.97453 0.97690 1.22739 0.96726 0.99859 0.97219 1.22801 0.97665 0.97848 0.99317 1.22680 0.94682 0.97353 1.00740 1.22715 0.97160 0.98546 0.96455 0.91657 0.79620 0.88532 0.91652 0.88429 0.91387 0.90233 0.91894 0.90350 0.90090 0.91439 0.89512 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 13.96 55.50 0.77 -25.39 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.76 27.74 -169.99 -4.71 15.05 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 7 C -0.31 -8.86 10.16 -14.94 -0.15 -9.01 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.51 5.09 -10.96 -0.06 -14.56 16 10 C 0.46 10.83 7.31 -10.98 -0.08 10.75 16 11 O -0.58 -16.00 15.47 5.55 0.09 -15.92 16 12 C -0.13 -2.22 4.15 -90.79 -0.38 -2.60 16 13 C -0.09 -1.35 7.17 -26.28 -0.19 -1.54 16 14 C -0.11 -1.42 1.11 -154.63 -0.17 -1.59 16 15 C -0.13 -1.46 7.84 -26.28 -0.21 -1.67 16 16 C -0.14 -1.38 8.08 -25.75 -0.21 -1.59 16 17 C -0.12 -1.26 7.85 -26.20 -0.21 -1.46 16 18 C -0.11 -1.67 7.39 -26.28 -0.19 -1.86 16 19 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 20 H 0.37 8.11 5.76 -40.82 -0.24 7.87 16 21 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.10 1.73 7.42 -51.93 -0.39 1.35 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.42 8.09 -51.92 -0.42 1.00 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 259.80 15.07 3.92 3.92 Total: -1.00 -31.89 259.80 -6.28 -38.16 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.40 Total: 8.27 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.88 Total: -9.51 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.72 Total: -39.96 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.89 -6.28 -38.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335527419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.923 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds