Wall clock time and date at job start Thu Apr 9 2020 11:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 119.99945 * 2 1 4 4 H 1.48501 * 109.46777 * 269.99812 * 3 2 1 5 5 H 1.48499 * 109.46923 * 29.99512 * 3 2 1 6 6 H 1.48499 * 109.46910 * 149.99572 * 3 2 1 7 7 C 1.38947 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99915 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99848 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99778 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00127 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99768 * 180.02562 * 10 9 7 13 13 C 1.53950 * 113.57669 * 180.02562 * 12 10 9 14 14 C 1.52906 * 86.78208 * 220.58456 * 13 12 10 15 15 C 1.52913 * 121.13846 * 150.61759 * 14 13 12 16 16 C 1.53952 * 86.78179 * 100.82243 * 15 14 13 17 17 C 1.53068 * 121.06931 * 259.16126 * 14 13 12 18 18 C 1.52907 * 88.04368 * 24.89826 * 14 13 12 19 19 H 0.97002 * 120.00127 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00327 * 0.02562 * 9 7 2 21 21 H 1.09000 * 112.82433 * 311.08720 * 12 10 9 22 22 H 1.09003 * 113.66331 * 106.11617 * 13 12 10 23 23 H 1.09003 * 113.66300 * 335.05509 * 13 12 10 24 24 H 1.09000 * 113.66161 * 346.35132 * 15 14 13 25 25 H 1.09004 * 113.74945 * 215.30259 * 15 14 13 26 26 H 1.09002 * 113.58142 * 139.33940 * 16 15 14 27 27 H 1.09004 * 113.57653 * 270.05541 * 16 15 14 28 28 H 1.09006 * 113.66752 * 144.67391 * 17 14 13 29 29 H 1.09001 * 113.71350 * 13.57398 * 17 14 13 30 30 H 1.09008 * 113.66358 * 89.56934 * 18 14 13 31 31 H 1.08997 * 113.66794 * 220.62745 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3705 0.0022 13 6 6.1766 -3.7814 0.0015 14 6 7.2041 -3.2399 0.9959 15 6 7.8522 -4.1515 2.0385 16 6 9.0782 -4.1986 1.1086 17 6 8.6116 -2.8455 0.5415 18 6 6.1773 -2.1814 1.4002 19 1 -0.4850 0.8401 -0.0004 20 1 3.8649 -0.3632 0.0014 21 1 5.9842 -1.7098 -0.7544 22 1 6.6063 -4.0707 -0.9576 23 1 5.5216 -4.5449 0.4213 24 1 7.3511 -5.1130 2.1509 25 1 8.0451 -3.6601 2.9922 26 1 10.0295 -4.1449 1.6380 27 1 9.0437 -5.0109 0.3825 28 1 9.0179 -1.9849 1.0730 29 1 8.7165 -2.7651 -0.5404 30 1 5.5224 -2.4951 2.2132 31 1 6.6075 -1.1925 1.5585 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335527419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:32 Heat of formation + Delta-G solvation = -23.845141 kcal Electronic energy + Delta-G solvation = -13659.884598 eV Core-core repulsion = 11327.441965 eV Total energy + Delta-G solvation = -2332.442634 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64105 -39.67246 -36.13738 -35.35562 -33.73350 -27.98591 -26.78217 -26.54198 -25.31991 -22.56770 -21.10981 -19.91331 -18.81262 -17.82656 -16.91862 -16.30912 -16.20710 -15.72471 -15.27586 -14.92618 -14.44104 -13.84565 -13.59617 -13.41175 -13.00155 -12.89530 -12.78514 -12.44512 -12.01266 -11.85602 -11.75731 -11.53698 -11.09002 -10.96246 -10.86447 -10.28227 -10.24268 -8.44573 -6.05721 1.28323 1.33231 1.42737 1.90936 2.20729 2.92651 3.10615 3.51177 3.62903 3.69690 3.83803 3.95438 4.02878 4.45291 4.48527 4.63274 4.78771 4.86220 4.91668 4.98009 5.02631 5.12215 5.16509 5.17602 5.41139 5.51792 5.61108 5.68265 5.92149 6.55741 6.84318 7.37164 7.93747 8.73259 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056966 B = 0.007516 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.403351 B = 3724.687971 C = 4026.587763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.232 1.232 7 C -0.334 4.334 8 H 0.053 0.947 9 N -0.587 5.587 10 C 0.456 3.544 11 O -0.631 6.631 12 C -0.126 4.126 13 C -0.092 4.092 14 C -0.103 4.103 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.108 4.108 18 C -0.108 4.108 19 H 0.280 0.720 20 H 0.390 0.610 21 H 0.130 0.870 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.981 0.521 2.105 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.156 1.156 7 C -0.463 4.463 8 H 0.071 0.929 9 N -0.227 5.227 10 C 0.245 3.755 11 O -0.517 6.517 12 C -0.147 4.147 13 C -0.130 4.130 14 C -0.103 4.103 15 C -0.170 4.170 16 C -0.169 4.169 17 C -0.145 4.145 18 C -0.146 4.146 19 H 0.090 0.910 20 H 0.225 0.775 21 H 0.148 0.852 22 H 0.099 0.901 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.369 -0.067 2.102 20.478 hybrid contribution -0.818 0.672 -0.051 1.060 sum 19.552 0.605 2.052 19.668 Atomic orbital electron populations 1.69808 1.08134 1.29349 1.50062 1.26138 0.96497 1.02736 0.95861 0.85374 0.79502 0.76645 0.80108 1.17947 1.19671 1.15562 1.19059 0.81671 0.94966 1.50646 0.92851 1.42095 1.05753 1.07696 1.67128 1.20989 0.90961 0.83029 0.80507 1.90506 1.71710 1.33154 1.56342 1.22731 0.88693 1.01614 1.01691 1.22458 0.96064 0.94660 0.99770 1.22469 0.93633 0.96760 0.97425 1.22818 0.97363 0.99079 0.97745 1.22781 0.97692 0.97600 0.98794 1.22722 0.91924 0.98274 1.01552 1.22719 0.97161 1.00816 0.93889 0.91036 0.77463 0.85233 0.90096 0.91691 0.92480 0.89065 0.89979 0.90311 0.88282 0.90642 0.91814 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.96 21.66 0.30 -56.87 16 2 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 3 Si 0.96 39.57 27.74 68.60 1.90 41.47 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 7 C -0.33 -20.26 10.16 84.04 0.85 -19.40 16 8 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 9 N -0.59 -29.09 5.09 -306.98 -1.56 -30.65 16 10 C 0.46 21.88 7.31 87.66 0.64 22.52 16 11 O -0.63 -36.93 15.47 -3.07 -0.05 -36.98 16 12 C -0.13 -4.16 4.15 -10.90 -0.05 -4.21 16 13 C -0.09 -2.79 7.17 30.88 0.22 -2.57 16 14 C -0.10 -2.40 1.11 -52.26 -0.06 -2.46 16 15 C -0.13 -2.70 7.84 30.89 0.24 -2.45 16 16 C -0.13 -2.11 8.08 31.23 0.25 -1.85 16 17 C -0.11 -1.80 7.85 30.94 0.24 -1.56 16 18 C -0.11 -2.98 7.39 30.88 0.23 -2.75 16 19 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 20 H 0.39 16.11 5.76 -92.71 -0.53 15.58 16 21 H 0.13 3.47 8.14 -2.39 -0.02 3.46 16 22 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.06 2.40 7.42 -2.39 -0.02 2.38 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 2.05 8.09 -2.38 -0.02 2.03 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -75.08 259.80 4.17 -70.91 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.52 Total: 27.15 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.05 Total: -15.03 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -1.26 Total: -87.52 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.05 Total: -36.98 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -75.08 4.17 -70.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335527419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.067 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds