Wall clock time and date at job start Thu Apr 9 2020 11:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99824 * 2 1 4 4 C 1.50701 * 109.47010 * 269.99547 * 3 2 1 5 5 H 1.07998 * 120.00040 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99860 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99641 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00161 * 0.02562 * 6 4 3 9 9 H 1.48507 * 109.46818 * 90.00009 * 8 6 4 10 10 H 1.48501 * 109.47243 * 209.99502 * 8 6 4 11 11 H 1.48495 * 109.47143 * 330.00145 * 8 6 4 12 12 C 1.34772 * 120.00058 * 179.97438 * 2 1 3 13 13 O 1.21616 * 120.00078 * 180.33597 * 12 2 1 14 14 C 1.47101 * 119.99966 * 0.34115 * 12 2 1 15 15 C 1.32615 * 124.62214 * 172.51735 * 14 12 2 16 16 C 1.51108 * 110.76091 * 180.19363 * 15 14 12 17 17 C 1.54733 * 104.76034 * 343.05382 * 16 15 14 18 18 C 1.51109 * 124.61959 * 352.47364 * 14 12 2 19 19 H 1.09008 * 109.46959 * 263.29439 * 1 2 3 20 20 H 1.08994 * 109.46837 * 23.28930 * 1 2 3 21 21 H 1.08999 * 109.47037 * 143.29293 * 1 2 3 22 22 H 1.08999 * 109.47358 * 30.00113 * 3 2 1 23 23 H 1.09005 * 109.47117 * 150.00042 * 3 2 1 24 24 H 0.96997 * 119.99725 * 179.97438 * 7 6 4 25 25 H 1.08008 * 124.61921 * 359.92248 * 15 14 12 26 26 H 1.08995 * 110.36903 * 102.01092 * 16 15 14 27 27 H 1.09002 * 110.36455 * 224.33486 * 16 15 14 28 28 H 1.08995 * 111.18498 * 267.18196 * 17 16 15 29 29 H 1.09012 * 110.84833 * 143.33674 * 17 16 15 30 30 H 1.09004 * 110.36771 * 315.47210 * 18 14 12 31 31 H 1.08999 * 110.36557 * 77.68982 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.3448 3.2578 -2.9128 8 14 3.7329 3.9293 -0.2530 9 1 5.1065 3.5082 0.1229 10 1 3.7478 5.3561 -0.6646 11 1 2.8270 3.7593 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3551 -1.1672 0.0067 14 6 1.4034 -2.4411 -0.0065 15 6 1.9645 -3.6343 -0.1487 16 6 0.9194 -4.7251 -0.1145 17 6 -0.3305 -4.0543 0.5036 18 6 -0.0943 -2.5686 0.1483 19 1 -0.3633 -0.1200 1.0207 20 1 -0.3633 0.9439 -0.4063 21 1 -0.3633 -0.8239 -0.6143 22 1 1.6084 2.0284 0.5138 23 1 3.1499 1.1384 0.5138 24 1 3.8210 4.0840 -3.0900 25 1 3.0236 -3.8030 -0.2764 26 1 0.7044 -5.0763 -1.1236 27 1 1.2541 -5.5515 0.5125 28 1 -0.3608 -4.1973 1.5837 29 1 -1.2420 -4.4272 0.0363 30 1 -0.4486 -1.9251 0.9537 31 1 -0.5951 -2.3161 -0.7863 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336245072.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:44 Heat of formation + Delta-G solvation = -4.454810 kcal Electronic energy + Delta-G solvation = -13763.222820 eV Core-core repulsion = 11431.621014 eV Total energy + Delta-G solvation = -2331.601806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.66182 -37.34178 -34.98644 -32.54062 -29.73402 -28.98612 -27.43009 -25.99189 -22.86445 -21.04735 -19.92457 -17.91012 -16.93365 -16.14999 -15.73799 -15.34089 -14.45348 -14.19561 -13.55218 -12.95787 -12.64868 -12.41198 -12.17511 -11.99205 -11.84701 -11.54327 -11.49265 -11.27546 -10.90660 -10.56115 -10.35158 -10.11304 -9.52370 -9.04928 -8.74257 -8.56908 -7.61733 -6.06783 -4.05407 1.77510 3.30820 3.36817 3.38657 3.83716 4.01686 4.41499 4.58841 4.67665 4.95904 5.16829 5.27019 5.39028 5.56830 5.64177 5.74882 5.78733 5.83686 5.89427 5.98956 6.15611 6.24496 6.46579 6.74367 6.79140 6.98797 7.38682 7.63149 8.29976 8.49355 8.95368 9.02804 9.53494 11.06707 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056793 B = 0.007843 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.898935 B = 3568.990260 C = 3671.015601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.591 5.591 3 C 0.214 3.786 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.554 3.446 13 O -0.543 6.543 14 C -0.177 4.177 15 C -0.097 4.097 16 C -0.103 4.103 17 C -0.128 4.128 18 C -0.096 4.096 19 H 0.045 0.955 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.030 0.970 23 H 0.037 0.963 24 H 0.264 0.736 25 H 0.135 0.865 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -12.072 7.399 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.322 5.322 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.342 3.658 13 O -0.422 6.422 14 C -0.180 4.180 15 C -0.117 4.117 16 C -0.140 4.140 17 C -0.165 4.165 18 C -0.133 4.133 19 H 0.064 0.936 20 H 0.091 0.909 21 H 0.096 0.904 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.576 -11.868 7.298 16.360 hybrid contribution 0.373 0.758 0.477 0.970 sum -8.203 -11.111 7.775 15.849 Atomic orbital electron populations 1.22364 0.81147 1.03968 1.00291 1.47701 1.06321 1.06964 1.71172 1.19691 0.92512 0.80028 0.98385 1.21349 1.36954 1.07132 0.91278 0.90766 1.24868 0.95231 0.97350 0.95626 1.69904 1.41562 1.23550 1.18651 0.86832 0.80151 0.79695 0.82910 1.19877 1.21035 1.19065 1.17901 0.86995 0.83371 0.77497 1.90750 1.13478 1.87302 1.50689 1.22031 0.96093 0.94142 1.05718 1.23914 0.99676 0.93474 0.94653 1.21448 0.93843 0.97237 1.01445 1.22544 0.97706 0.95355 1.00904 1.21795 0.92745 0.96654 1.02077 0.93617 0.90869 0.90351 0.95171 0.94528 0.92571 0.84716 0.90063 0.90765 0.91068 0.90839 0.89992 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 8.91 59.85 0.53 1.59 16 2 N -0.59 -12.95 2.86 -184.36 -0.53 -13.47 16 3 C 0.21 5.47 4.20 -5.19 -0.02 5.45 16 4 C -0.53 -15.69 9.94 -34.44 -0.34 -16.04 16 5 H 0.07 2.41 8.06 -52.49 -0.42 1.99 16 6 C 0.07 2.13 5.47 -17.81 -0.10 2.03 16 7 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 8 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.55 12.29 7.65 -12.67 -0.10 12.19 16 13 O -0.54 -14.33 16.36 5.26 0.09 -14.24 16 14 C -0.18 -2.94 5.94 -102.73 -0.61 -3.55 16 15 C -0.10 -1.42 10.43 -36.01 -0.38 -1.80 16 16 C -0.10 -1.07 6.81 -26.77 -0.18 -1.25 16 17 C -0.13 -1.22 7.17 -24.99 -0.18 -1.40 16 18 C -0.10 -1.17 4.45 -26.85 -0.12 -1.29 16 19 H 0.05 0.61 7.06 -51.92 -0.37 0.24 16 20 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 21 H 0.08 1.10 4.16 -51.93 -0.22 0.88 16 22 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 23 H 0.04 0.99 6.84 -51.93 -0.36 0.64 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.14 2.04 8.04 -52.48 -0.42 1.62 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.08 0.93 5.88 -51.93 -0.31 0.63 16 31 H 0.09 0.97 6.60 -51.93 -0.34 0.63 16 LS Contribution 255.04 15.07 3.84 3.84 Total: -1.00 -34.81 255.04 -6.06 -40.87 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -4.08 Total: -2.86 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.49 Total: -4.05 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.25 Total: -40.91 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.81 -6.06 -40.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336245072.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.420 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds