Wall clock time and date at job start Thu Apr 9 2020 11:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47431 * 239.99787 * 3 2 1 5 5 H 1.48497 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46967 * 119.99966 * 3 2 1 7 7 C 1.37873 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00054 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46876 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00223 * 180.02562 * 10 9 7 12 12 H 1.09009 * 112.93588 * 23.63361 * 11 10 9 13 13 C 1.53923 * 113.65434 * 252.26496 * 11 10 9 14 14 C 1.53921 * 87.22364 * 220.64621 * 13 11 10 15 15 C 1.53012 * 113.65338 * 154.99911 * 11 10 9 16 16 C 1.53567 * 115.13321 * 256.33426 * 15 11 10 17 17 C 1.55057 * 103.98272 * 153.12850 * 16 15 11 18 18 C 1.54957 * 102.85860 * 322.69371 * 17 16 15 19 19 C 1.53172 * 115.36864 * 22.34098 * 15 11 10 20 20 H 0.97001 * 119.99866 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47169 * 60.00494 * 9 7 2 22 22 H 1.08991 * 109.47429 * 300.00129 * 9 7 2 23 23 H 1.00905 * 111.00359 * 56.05003 * 10 9 7 24 24 H 1.08996 * 113.58774 * 106.06143 * 13 11 10 25 25 H 1.08990 * 113.66067 * 335.24133 * 13 11 10 26 26 H 1.09001 * 113.65143 * 270.36967 * 14 13 11 27 27 H 1.09002 * 113.65123 * 139.34635 * 14 13 11 28 28 H 1.08995 * 110.52657 * 34.50308 * 16 15 11 29 29 H 1.08998 * 110.52383 * 271.75425 * 16 15 11 30 30 H 1.08998 * 110.73857 * 204.34979 * 17 16 15 31 31 H 1.09007 * 110.73637 * 81.03513 * 17 16 15 32 32 H 1.09002 * 110.47696 * 156.24287 * 18 17 16 33 33 H 1.08996 * 110.47613 * 278.87123 * 18 17 16 34 34 H 1.08996 * 110.09276 * 111.14324 * 19 15 11 35 35 H 1.09000 * 110.08947 * 349.54524 * 19 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 1 0.4944 -4.8420 -0.4039 13 6 1.5879 -5.6551 1.3416 14 6 1.7880 -6.9446 0.5254 15 6 2.3294 -6.0521 -0.5936 16 6 1.9309 -6.4752 -2.0150 17 6 3.2358 -7.0643 -2.6103 18 6 4.3312 -6.1388 -2.0232 19 6 3.8464 -5.8403 -0.5873 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8404 -3.5487 0.7809 24 1 0.6572 -5.6377 1.9086 25 1 2.4546 -5.3804 1.9426 26 1 0.8563 -7.4494 0.2699 27 1 2.5342 -7.6179 0.9474 28 1 1.6030 -5.6113 -2.5931 29 1 1.1489 -7.2338 -1.9827 30 1 3.2241 -7.0062 -3.6987 31 1 3.3812 -8.0926 -2.2792 32 1 5.2927 -6.6517 -2.0022 33 1 4.4019 -5.2174 -2.6012 34 1 4.3173 -6.5260 0.1171 35 1 4.0795 -4.8095 -0.3201 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336283206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:47 Heat of formation + Delta-G solvation = 0.502091 kcal Electronic energy + Delta-G solvation = -14096.485297 eV Core-core repulsion = 11900.931533 eV Total energy + Delta-G solvation = -2195.553764 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92491 -35.23651 -33.54454 -31.66750 -28.44028 -26.65838 -26.44810 -23.50168 -21.48422 -21.37627 -20.21305 -17.79949 -16.32346 -15.42620 -15.12068 -14.59014 -14.43918 -13.51600 -13.26714 -12.82733 -12.66892 -12.19762 -12.06383 -11.43706 -11.24974 -11.04595 -10.83157 -10.79015 -10.63884 -10.57494 -10.31636 -10.05711 -10.00308 -9.69686 -9.59133 -9.02274 -8.45220 -7.16581 -6.00648 -4.02560 3.34739 3.38508 3.41697 4.44845 4.77189 4.88417 4.90562 5.17627 5.25232 5.34981 5.42628 5.52246 5.73173 5.81710 5.94212 5.95657 6.00965 6.05516 6.09305 6.14925 6.20983 6.27181 6.38627 6.51760 6.64296 6.76102 6.77748 6.92979 7.31963 7.48692 7.82374 8.17650 8.46365 8.66888 9.07008 9.62268 11.10352 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.007405 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.273879 B = 3780.369892 C = 4055.693372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.674 5.674 11 C 0.082 3.918 12 H 0.087 0.913 13 C -0.170 4.170 14 C -0.130 4.130 15 C -0.074 4.074 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.098 4.098 20 H 0.261 0.739 21 H 0.026 0.974 22 H -0.015 1.015 23 H 0.329 0.671 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -13.223 -1.062 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.303 5.303 11 C -0.030 4.030 12 H 0.105 0.895 13 C -0.209 4.209 14 C -0.168 4.168 15 C -0.075 4.075 16 C -0.146 4.146 17 C -0.160 4.160 18 C -0.158 4.158 19 C -0.136 4.136 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.003 0.997 23 H 0.147 0.853 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.747 -13.042 -1.751 13.989 hybrid contribution -0.038 0.883 0.942 1.292 sum 4.709 -12.158 -0.810 13.064 Atomic orbital electron populations 1.69957 1.06073 1.26825 1.50960 1.24986 0.94862 0.99319 0.95402 0.86560 0.79433 0.82769 0.78618 1.20183 1.21359 1.20305 1.21174 0.93447 0.90385 1.50271 0.92094 1.19561 0.90635 0.87416 0.95591 1.60504 1.20487 1.01018 1.48273 1.22852 0.96816 0.89692 0.93636 0.89507 1.23669 1.01391 0.97664 0.98207 1.22839 1.00501 0.95946 0.97467 1.22125 0.95817 0.95943 0.93600 1.22249 0.96650 0.99937 0.95776 1.22491 0.95729 0.98521 0.99300 1.22349 0.97288 0.99315 0.96842 1.21790 0.93030 1.02739 0.96010 0.92905 0.95573 0.99679 0.85278 0.92246 0.90438 0.90724 0.92001 0.91148 0.92473 0.92347 0.92300 0.92697 0.91429 0.93082 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.15 5.28 -4.97 -0.03 5.12 16 10 N -0.67 -14.44 5.25 -107.47 -0.56 -15.01 16 11 C 0.08 1.48 3.71 -67.23 -0.25 1.23 16 12 H 0.09 1.67 7.86 -51.92 -0.41 1.26 16 13 C -0.17 -2.63 7.54 -25.77 -0.19 -2.82 16 14 C -0.13 -1.75 7.28 -26.24 -0.19 -1.94 16 15 C -0.07 -1.11 1.11 -154.11 -0.17 -1.28 16 16 C -0.11 -1.54 6.20 -25.35 -0.16 -1.70 16 17 C -0.12 -1.54 6.91 -24.61 -0.17 -1.71 16 18 C -0.12 -1.62 6.85 -24.93 -0.17 -1.79 16 19 C -0.10 -1.44 6.05 -25.87 -0.16 -1.59 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.03 0.75 8.13 -51.93 -0.42 0.33 16 22 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 23 H 0.33 6.80 7.66 -39.29 -0.30 6.50 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.18 7.82 -51.93 -0.41 0.77 16 26 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 27 H 0.06 0.76 7.86 -51.93 -0.41 0.36 16 28 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 29 H 0.06 0.73 7.80 -51.93 -0.41 0.33 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.68 7.73 -51.93 -0.40 0.28 16 35 H 0.09 1.44 6.23 -51.93 -0.32 1.11 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -29.28 277.24 -8.57 -37.85 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.99 Total: 2.51 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.90 Total: -20.00 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.17 Total: -41.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.28 -8.57 -37.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336283206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.350 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds