Wall clock time and date at job start Thu Apr 9 2020 11:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00311 * 2 1 4 4 C 1.53003 * 109.47103 * 123.37698 * 3 2 1 5 5 C 1.50702 * 112.84952 * 57.43568 * 4 3 2 6 6 O 1.21290 * 119.99926 * 246.08631 * 5 4 3 7 7 N 1.34776 * 119.99937 * 66.08132 * 5 4 3 8 8 C 1.37100 * 119.99669 * 175.06426 * 7 5 4 9 9 H 1.07999 * 119.99916 * 359.97438 * 8 7 5 10 10 C 1.38954 * 119.99847 * 179.97438 * 8 7 5 11 11 N 1.31405 * 119.99716 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99883 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47096 * 90.00093 * 12 10 8 14 14 H 1.48500 * 109.46961 * 209.99668 * 12 10 8 15 15 H 1.48501 * 109.47637 * 329.99871 * 12 10 8 16 16 C 1.53778 * 113.61651 * 286.23466 * 4 3 2 17 17 C 1.53947 * 87.02224 * 220.04855 * 16 4 3 18 18 C 1.53786 * 87.11367 * 25.36466 * 17 16 4 19 19 H 1.08005 * 119.99551 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.00283 * 179.97438 * 1 2 3 21 21 H 1.07996 * 119.99679 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47505 * 243.37940 * 3 2 1 23 23 H 1.09007 * 109.47261 * 3.38037 * 3 2 1 24 24 H 0.96993 * 120.00437 * 355.06491 * 7 5 4 25 25 H 0.97009 * 119.99722 * 179.97438 * 11 10 8 26 26 H 1.09002 * 113.61318 * 334.56826 * 16 4 3 27 27 H 1.09005 * 113.61196 * 105.47117 * 16 4 3 28 28 H 1.09001 * 113.53913 * 270.81222 * 17 16 4 29 29 H 1.08999 * 113.67018 * 139.93256 * 17 16 4 30 30 H 1.08995 * 113.61118 * 220.09104 * 18 17 16 31 31 H 1.09000 * 113.61113 * 89.18344 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0059 1.3498 1.2046 5 6 3.9790 0.1994 1.2295 6 8 3.9125 -0.6322 2.1099 7 7 4.9230 0.0945 0.2734 8 6 5.8708 -0.8930 0.3513 9 1 5.8612 -1.5866 1.1791 10 6 6.8439 -1.0015 -0.6347 11 7 7.7526 -1.9477 -0.5597 12 14 6.8610 0.1986 -2.0660 13 1 7.6993 1.3736 -1.7168 14 1 7.4227 -0.4708 -3.2666 15 1 5.4747 0.6473 -2.3525 16 6 2.2838 1.5750 2.5435 17 6 3.4509 2.5036 2.9249 18 6 3.6679 2.7214 1.4181 19 1 -0.5400 0.9354 -0.0004 20 1 -0.5400 -0.9352 -0.0004 21 1 1.8500 -0.9353 0.0004 22 1 2.6441 1.3895 -0.9187 23 1 1.3568 2.1327 0.0606 24 1 4.9320 0.7177 -0.4698 25 1 8.4317 -2.0237 -1.2482 26 1 1.3294 2.0919 2.4433 27 1 2.2182 0.6787 3.1604 28 1 4.2763 1.9868 3.4147 29 1 3.1390 3.4032 3.4556 30 1 4.7181 2.7492 1.1278 31 1 3.0926 3.5522 1.0097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379382341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:09 Heat of formation + Delta-G solvation = -4.226712 kcal Electronic energy + Delta-G solvation = -14047.156522 eV Core-core repulsion = 11715.564607 eV Total energy + Delta-G solvation = -2331.591915 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97051 -36.70219 -34.18828 -33.89763 -31.63725 -28.50186 -25.49682 -24.99964 -23.03508 -20.84106 -19.38279 -18.89446 -17.44712 -15.78812 -15.30131 -15.08454 -14.57865 -14.03920 -13.40272 -13.35591 -12.86717 -12.65307 -12.27055 -12.00637 -11.90765 -11.22234 -11.14299 -10.84698 -10.61061 -10.47936 -10.20608 -9.96717 -9.81609 -9.55360 -8.96621 -8.44733 -8.16989 -6.31065 -3.81956 2.56274 3.03472 3.07253 3.15284 3.73157 4.10575 4.52759 4.84129 4.92173 5.15487 5.17883 5.30940 5.37600 5.52723 5.71196 5.79330 5.91795 5.98127 6.02636 6.13812 6.19879 6.28016 6.49710 6.58379 6.75759 6.93149 7.04829 7.58588 8.15870 8.60814 8.95358 9.44200 9.85052 10.82097 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.010823 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.729995 B = 2586.487875 C = 2776.085451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.132 4.132 3 C -0.075 4.075 4 C -0.094 4.094 5 C 0.479 3.521 6 O -0.573 6.573 7 N -0.586 5.586 8 C -0.305 4.305 9 H 0.119 0.881 10 C 0.042 3.958 11 N -0.881 5.881 12 Si 0.876 3.124 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.269 1.269 16 C -0.115 4.115 17 C -0.138 4.138 18 C -0.132 4.132 19 H 0.091 0.909 20 H 0.093 0.907 21 H 0.112 0.888 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.371 0.629 25 H 0.273 0.727 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 10.182 -0.711 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.150 4.150 3 C -0.113 4.113 4 C -0.098 4.098 5 C 0.265 3.735 6 O -0.456 6.456 7 N -0.224 5.224 8 C -0.434 4.434 9 H 0.137 0.863 10 C -0.161 4.161 11 N -0.521 5.521 12 Si 0.702 3.298 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.194 1.194 16 C -0.152 4.152 17 C -0.176 4.176 18 C -0.170 4.170 19 H 0.109 0.891 20 H 0.112 0.888 21 H 0.130 0.870 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.204 0.796 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.888 9.506 -0.205 13.718 hybrid contribution 0.220 0.776 -1.315 1.543 sum -9.668 10.283 -1.521 14.195 Atomic orbital electron populations 1.23671 0.95708 1.01194 1.04040 1.23005 0.95976 0.98917 0.97104 1.20718 0.97486 0.95657 0.97429 1.21915 0.96380 0.95141 0.96336 1.19058 0.83056 0.87266 0.84116 1.90540 1.73599 1.43217 1.38236 1.42162 1.27421 1.30192 1.22595 1.19447 1.04359 1.08837 1.10720 0.86324 1.25023 0.96009 0.97117 0.97907 1.69622 1.15812 1.31751 1.34917 0.86722 0.78597 0.81584 0.82892 1.19537 1.20119 1.19403 1.22787 0.96524 1.00234 0.95687 1.22809 0.99503 0.99346 0.95923 1.23014 1.01108 0.95649 0.97187 0.89070 0.88849 0.87002 0.90909 0.91101 0.79643 0.91629 0.90451 0.90038 0.89857 0.91831 0.91111 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.82 14.32 29.01 0.42 -2.41 16 2 C -0.13 -2.12 8.87 -36.03 -0.32 -2.44 16 3 C -0.08 -1.14 5.09 -27.88 -0.14 -1.28 16 4 C -0.09 -1.63 0.80 -154.84 -0.12 -1.75 16 5 C 0.48 11.05 5.51 -10.98 -0.06 10.99 16 6 O -0.57 -15.56 15.54 5.55 0.09 -15.48 16 7 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 8 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 9 H 0.12 3.85 7.40 -52.49 -0.39 3.46 16 10 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 11 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 12 Si 0.88 19.58 27.74 -169.99 -4.71 14.86 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 16 C -0.11 -1.81 6.96 -25.83 -0.18 -1.99 16 17 C -0.14 -2.07 7.81 -25.83 -0.20 -2.27 16 18 C -0.13 -1.95 7.23 -25.91 -0.19 -2.14 16 19 H 0.09 1.05 7.84 -52.48 -0.41 0.64 16 20 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 21 H 0.11 2.10 7.73 -52.49 -0.41 1.70 16 22 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.07 0.88 7.77 -51.92 -0.40 0.47 16 24 H 0.37 8.05 5.77 -40.82 -0.24 7.81 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 27 H 0.08 1.48 7.34 -51.93 -0.38 1.10 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 31 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 264.21 15.07 3.98 3.98 Total: -1.00 -31.20 264.21 -5.32 -36.52 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.34 Total: 10.48 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.05 Total: -11.05 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.72 Total: -39.31 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.09 Total: -15.48 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.20 -5.32 -36.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379382341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.289 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds