Wall clock time and date at job start Thu Apr 9 2020 11:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00311 * 2 1 4 4 C 1.53003 * 109.47103 * 123.37698 * 3 2 1 5 5 C 1.50702 * 112.84952 * 57.43568 * 4 3 2 6 6 O 1.21290 * 119.99926 * 246.08631 * 5 4 3 7 7 N 1.34776 * 119.99937 * 66.08132 * 5 4 3 8 8 C 1.37100 * 119.99669 * 175.06426 * 7 5 4 9 9 H 1.07999 * 119.99916 * 359.97438 * 8 7 5 10 10 C 1.38954 * 119.99847 * 179.97438 * 8 7 5 11 11 N 1.31405 * 119.99716 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99883 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47096 * 90.00093 * 12 10 8 14 14 H 1.48500 * 109.46961 * 209.99668 * 12 10 8 15 15 H 1.48501 * 109.47637 * 329.99871 * 12 10 8 16 16 C 1.53778 * 113.61651 * 286.23466 * 4 3 2 17 17 C 1.53947 * 87.02224 * 220.04855 * 16 4 3 18 18 C 1.53786 * 87.11367 * 25.36466 * 17 16 4 19 19 H 1.08005 * 119.99551 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.00283 * 179.97438 * 1 2 3 21 21 H 1.07996 * 119.99679 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47505 * 243.37940 * 3 2 1 23 23 H 1.09007 * 109.47261 * 3.38037 * 3 2 1 24 24 H 0.96993 * 120.00437 * 355.06491 * 7 5 4 25 25 H 0.97009 * 119.99722 * 179.97438 * 11 10 8 26 26 H 1.09002 * 113.61318 * 334.56826 * 16 4 3 27 27 H 1.09005 * 113.61196 * 105.47117 * 16 4 3 28 28 H 1.09001 * 113.53913 * 270.81222 * 17 16 4 29 29 H 1.08999 * 113.67018 * 139.93256 * 17 16 4 30 30 H 1.08995 * 113.61118 * 220.09104 * 18 17 16 31 31 H 1.09000 * 113.61113 * 89.18344 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0059 1.3498 1.2046 5 6 3.9790 0.1994 1.2295 6 8 3.9125 -0.6322 2.1099 7 7 4.9230 0.0945 0.2734 8 6 5.8708 -0.8930 0.3513 9 1 5.8612 -1.5866 1.1791 10 6 6.8439 -1.0015 -0.6347 11 7 7.7526 -1.9477 -0.5597 12 14 6.8610 0.1986 -2.0660 13 1 7.6993 1.3736 -1.7168 14 1 7.4227 -0.4708 -3.2666 15 1 5.4747 0.6473 -2.3525 16 6 2.2838 1.5750 2.5435 17 6 3.4509 2.5036 2.9249 18 6 3.6679 2.7214 1.4181 19 1 -0.5400 0.9354 -0.0004 20 1 -0.5400 -0.9352 -0.0004 21 1 1.8500 -0.9353 0.0004 22 1 2.6441 1.3895 -0.9187 23 1 1.3568 2.1327 0.0606 24 1 4.9320 0.7177 -0.4698 25 1 8.4317 -2.0237 -1.2482 26 1 1.3294 2.0919 2.4433 27 1 2.2182 0.6787 3.1604 28 1 4.2763 1.9868 3.4147 29 1 3.1390 3.4032 3.4556 30 1 4.7181 2.7492 1.1278 31 1 3.0926 3.5522 1.0097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379382341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:08 Heat of formation + Delta-G solvation = -25.905880 kcal Electronic energy + Delta-G solvation = -14048.096601 eV Core-core repulsion = 11715.564607 eV Total energy + Delta-G solvation = -2332.531994 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49739 -38.40719 -36.04543 -35.26324 -33.75765 -29.77275 -27.23789 -26.39155 -24.44753 -22.41568 -20.91466 -20.53989 -19.20724 -17.37418 -16.95449 -16.60006 -16.03511 -15.55340 -15.10453 -14.81452 -14.56465 -14.27034 -13.94778 -13.32720 -13.15942 -13.01458 -12.46460 -12.35677 -12.02308 -12.01019 -11.70211 -11.56780 -11.38611 -11.05732 -10.34328 -10.27904 -10.10373 -8.45139 -6.05751 1.26061 1.30994 1.40156 1.43105 1.92967 2.19121 2.86882 3.10137 3.59698 3.68884 3.94845 3.97983 4.16956 4.27264 4.43420 4.61556 4.78925 4.86467 4.89033 4.99641 5.07213 5.09330 5.24125 5.32768 5.48093 5.60864 5.77297 5.92010 5.93409 6.55375 6.84263 7.36908 7.93385 8.72685 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.010823 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.729995 B = 2586.487875 C = 2776.085451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.172 4.172 3 C -0.068 4.068 4 C -0.101 4.101 5 C 0.479 3.521 6 O -0.627 6.627 7 N -0.586 5.586 8 C -0.330 4.330 9 H 0.053 0.947 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.959 3.041 13 H -0.252 1.252 14 H -0.271 1.271 15 H -0.235 1.235 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.118 4.118 19 H 0.127 0.873 20 H 0.096 0.904 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.117 0.883 24 H 0.387 0.613 25 H 0.280 0.720 26 H 0.121 0.879 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 14.293 -2.673 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C -0.105 4.105 4 C -0.105 4.105 5 C 0.267 3.733 6 O -0.513 6.513 7 N -0.226 5.226 8 C -0.459 4.459 9 H 0.071 0.929 10 C -0.212 4.212 11 N -0.573 5.573 12 Si 0.778 3.222 13 H -0.176 1.176 14 H -0.196 1.196 15 H -0.159 1.159 16 C -0.148 4.148 17 C -0.178 4.178 18 C -0.155 4.155 19 H 0.145 0.855 20 H 0.114 0.886 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.135 0.865 24 H 0.223 0.777 25 H 0.089 0.911 26 H 0.139 0.861 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.228 13.628 -2.160 18.437 hybrid contribution 0.870 -0.648 -0.563 1.223 sum -11.357 12.980 -2.724 17.461 Atomic orbital electron populations 1.23946 0.94631 1.03012 0.99767 1.22873 0.97056 0.97967 1.01167 1.20758 0.97536 0.96284 0.95897 1.21916 0.95902 0.93803 0.98854 1.20347 0.82771 0.87958 0.82220 1.90507 1.74896 1.45768 1.40091 1.41985 1.27089 1.29743 1.23798 1.19014 1.06997 1.09881 1.10017 0.92865 1.26086 0.94519 0.99323 1.01224 1.69801 1.16785 1.34141 1.36569 0.85452 0.80688 0.78626 0.77403 1.17632 1.19615 1.15857 1.22875 0.98653 0.99321 0.93933 1.22788 0.97959 1.00244 0.96775 1.23104 1.00960 0.94965 0.96482 0.85547 0.88588 0.91783 0.90738 0.86486 0.77726 0.91071 0.86105 0.93799 0.93732 0.88037 0.92371 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 14.32 67.78 0.97 -3.19 16 2 C -0.17 -5.28 8.87 25.64 0.23 -5.05 16 3 C -0.07 -1.78 5.09 29.85 0.15 -1.63 16 4 C -0.10 -3.31 0.80 -52.40 -0.04 -3.36 16 5 C 0.48 22.90 5.51 87.66 0.48 23.38 16 6 O -0.63 -36.75 15.54 -3.06 -0.05 -36.80 16 7 N -0.59 -29.18 5.09 -306.98 -1.56 -30.74 16 8 C -0.33 -20.01 10.16 84.04 0.85 -19.16 16 9 H 0.05 3.83 7.40 -2.91 -0.02 3.81 16 10 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 11 N -0.93 -57.25 13.96 21.66 0.30 -56.94 16 12 Si 0.96 39.83 27.74 68.60 1.90 41.73 16 13 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 14 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 15 H -0.24 -8.42 6.52 99.48 0.65 -7.77 16 16 C -0.11 -3.24 6.96 31.18 0.22 -3.02 16 17 C -0.14 -3.87 7.81 31.18 0.24 -3.63 16 18 C -0.12 -3.01 7.23 31.12 0.22 -2.79 16 19 H 0.13 2.13 7.84 -2.91 -0.02 2.11 16 20 H 0.10 2.17 8.06 -2.91 -0.02 2.15 16 21 H 0.06 2.54 7.73 -2.91 -0.02 2.52 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.12 2.06 7.77 -2.38 -0.02 2.04 16 24 H 0.39 16.37 5.77 -92.71 -0.53 15.84 16 25 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 26 H 0.12 2.52 8.09 -2.39 -0.02 2.50 16 27 H 0.04 1.62 7.34 -2.38 -0.02 1.60 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 31 H 0.13 2.18 8.10 -2.39 -0.02 2.16 16 Total: -1.00 -76.90 264.21 4.91 -71.99 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.51 Total: 29.46 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 3.80 Total: -18.69 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -1.26 Total: -87.69 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.05 Total: -36.80 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.90 Total: 41.73 kcal Total: -76.90 4.91 -71.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379382341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.085 kcal (2) G-P(sol) polarization free energy of solvation -76.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds